Wall clock time and date at job start Tue Mar 31 2020 11:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46820 * 2 1 4 4 C 1.53000 * 109.47384 * 240.00260 * 2 1 3 5 5 C 1.50703 * 109.47383 * 64.99335 * 4 2 1 6 6 H 1.08002 * 119.99658 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00076 * 179.72373 * 5 4 2 8 8 N 1.31517 * 120.00157 * 0.27874 * 7 5 4 9 9 Si 1.86797 * 119.99941 * 180.27930 * 7 5 4 10 10 H 1.48499 * 109.47401 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47334 * 120.00084 * 9 7 5 12 12 H 1.48496 * 109.47238 * 240.00259 * 9 7 5 13 13 C 1.52994 * 109.47253 * 119.99753 * 2 1 3 14 14 N 1.46893 * 109.47382 * 295.00433 * 13 2 1 15 15 C 1.46900 * 111.00055 * 179.97438 * 14 13 2 16 16 H 1.08996 * 110.27550 * 34.30299 * 15 14 13 17 17 C 1.54599 * 110.30881 * 272.20906 * 15 14 13 18 18 C 1.55108 * 102.84251 * 219.18863 * 17 15 14 19 19 N 1.48532 * 103.28761 * 37.30506 * 18 17 15 20 20 C 1.46898 * 111.00048 * 200.33191 * 19 18 17 21 21 H 1.09007 * 109.46723 * 59.88855 * 20 19 18 22 22 C 1.52998 * 109.47373 * 299.88940 * 20 19 18 23 23 C 1.50700 * 109.47274 * 179.88301 * 20 19 18 24 24 C 1.38241 * 119.99316 * 45.39116 * 23 20 19 25 25 C 1.38237 * 119.99402 * 179.73907 * 24 23 20 26 26 C 1.38237 * 119.99826 * 0.55833 * 25 24 23 27 27 C 1.38234 * 120.00239 * 359.69458 * 26 25 24 28 28 C 1.38228 * 119.99798 * 0.02746 * 27 26 25 29 29 C 1.47896 * 105.81910 * 320.84689 * 19 18 17 30 30 H 1.09011 * 109.46652 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47462 * 299.99483 * 1 2 3 32 32 H 1.09004 * 109.47088 * 60.00417 * 1 2 3 33 33 H 1.09001 * 109.46893 * 305.00097 * 4 2 1 34 34 H 1.08995 * 109.47597 * 184.99867 * 4 2 1 35 35 H 0.96998 * 119.99817 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.46957 * 55.00745 * 13 2 1 37 37 H 1.09001 * 109.47037 * 175.00224 * 13 2 1 38 38 H 1.00898 * 111.00413 * 303.95568 * 14 13 2 39 39 H 1.09000 * 110.72694 * 337.48000 * 17 15 14 40 40 H 1.09000 * 110.72325 * 100.77078 * 17 15 14 41 41 H 1.09000 * 110.59165 * 278.86908 * 18 17 15 42 42 H 1.09000 * 110.68256 * 155.78489 * 18 17 15 43 43 H 1.09002 * 109.47174 * 65.86749 * 22 20 19 44 44 H 1.08995 * 109.47404 * 185.87013 * 22 20 19 45 45 H 1.09005 * 109.46485 * 305.86923 * 22 20 19 46 46 H 1.07997 * 120.00135 * 359.97438 * 24 23 20 47 47 H 1.07998 * 120.00158 * 180.26964 * 25 24 23 48 48 H 1.08000 * 119.99765 * 179.71965 * 26 25 24 49 49 H 1.08000 * 119.99750 * 180.02562 * 27 26 25 50 50 H 1.08009 * 119.99746 * 179.97438 * 28 27 26 51 51 H 1.08998 * 109.91992 * 265.97558 * 29 19 18 52 52 H 1.09007 * 110.08131 * 144.77793 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9977 -0.3990 -3.7280 8 7 2.6810 -1.5160 -3.8509 9 14 1.5102 0.5698 -5.2489 10 1 0.7526 1.7807 -4.8428 11 1 2.7315 0.9759 -5.9898 12 1 0.6594 -0.2768 -6.1233 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6271 3.6671 16 1 3.0828 -1.1141 3.4852 17 6 1.0823 -1.6592 4.1549 18 6 1.1248 -1.4902 5.6962 19 7 1.3097 -0.0272 5.8742 20 6 1.8465 0.2772 7.2073 21 1 2.8104 -0.2163 7.3322 22 6 0.8738 -0.2256 8.2759 23 6 2.0229 1.7671 7.3496 24 6 1.0193 2.6242 6.9383 25 6 1.1788 3.9906 7.0738 26 6 2.3466 4.5003 7.6099 27 6 3.3523 3.6434 8.0163 28 6 3.1904 2.2768 7.8861 29 6 2.2526 0.3919 4.8147 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6055 -1.7197 -1.2952 34 1 3.1264 -0.7994 -1.2057 35 1 2.9314 -1.8369 -4.7313 36 1 1.6055 -1.7198 1.2951 37 1 3.1264 -0.7993 1.2055 38 1 1.9880 0.9873 2.3967 39 1 0.0918 -1.4194 3.7682 40 1 1.3756 -2.6690 3.8678 41 1 1.9667 -2.0386 6.1189 42 1 0.1870 -1.8170 6.1454 43 1 0.8262 -1.3140 8.2406 44 1 1.2194 0.0912 9.2598 45 1 -0.1172 0.1877 8.0883 46 1 0.1091 2.2261 6.5147 47 1 0.3930 4.6601 6.7566 48 1 2.4731 5.5681 7.7116 49 1 4.2645 4.0417 8.4355 50 1 3.9763 1.6073 8.2033 51 1 3.2715 0.3890 5.2020 52 1 1.9945 1.3886 4.4568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602543378.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:56 Heat of formation + Delta-G solvation = -1.465028 kcal Electronic energy + Delta-G solvation = -26290.535784 eV Core-core repulsion = 22867.104292 eV Total energy + Delta-G solvation = -3423.431492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.93486 -39.54628 -37.97200 -35.91803 -34.50536 -33.12247 -31.72483 -30.57112 -30.23044 -29.06210 -28.12926 -26.26147 -24.73188 -24.16786 -23.48007 -22.57558 -21.28237 -20.98162 -20.58309 -18.50371 -17.76419 -17.16462 -16.93408 -16.50648 -16.37049 -16.10322 -15.72300 -15.31764 -15.15852 -14.81368 -14.64627 -14.27739 -14.18733 -14.03669 -13.93057 -13.69294 -13.33243 -13.26916 -13.08433 -12.87219 -12.79772 -12.63480 -12.59666 -12.36049 -12.24486 -12.19299 -12.07332 -11.91362 -11.79906 -11.72112 -11.53541 -11.46508 -11.07669 -10.87146 -10.54071 -9.75580 -9.57740 -9.43049 -9.26163 -8.17698 -6.26620 0.48309 0.57304 1.39712 1.40202 1.53377 2.41991 2.84283 3.03994 3.15785 3.23857 3.56741 3.71007 3.95283 4.03942 4.16046 4.20772 4.23642 4.32642 4.33285 4.36027 4.37603 4.39641 4.51630 4.57954 4.67216 4.68999 4.75789 4.77588 4.88755 4.90660 4.95298 4.96252 5.00865 5.02718 5.06515 5.17095 5.23721 5.29073 5.31872 5.33342 5.47644 5.51637 5.57375 5.60758 5.68846 5.71342 5.81683 5.89217 5.92241 6.12028 6.16897 6.20585 6.32482 6.50487 6.89590 7.41688 8.94655 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018333 B = 0.002330 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.926662 B =12012.948978 C =12906.254192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.073 4.073 3 H 0.052 0.948 4 C 0.032 3.968 5 C -0.527 4.527 6 H 0.060 0.940 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.080 3.920 14 N -0.671 5.671 15 C 0.075 3.925 16 H 0.041 0.959 17 C -0.111 4.111 18 C 0.043 3.957 19 N -0.508 5.508 20 C 0.113 3.887 21 H 0.050 0.950 22 C -0.135 4.135 23 C -0.086 4.086 24 C -0.101 4.101 25 C -0.134 4.134 26 C -0.130 4.130 27 C -0.129 4.129 28 C -0.128 4.128 29 C 0.052 3.948 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.036 0.964 33 H -0.010 1.010 34 H -0.015 1.015 35 H 0.262 0.738 36 H 0.061 0.939 37 H 0.015 0.985 38 H 0.341 0.659 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.122 0.878 47 H 0.131 0.869 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.129 0.871 51 H 0.044 0.956 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.098 6.243 29.250 29.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.049 4.049 14 N -0.303 5.303 15 C -0.036 4.036 16 H 0.059 0.941 17 C -0.149 4.149 18 C -0.084 4.084 19 N -0.232 5.232 20 C 0.005 3.995 21 H 0.068 0.932 22 C -0.192 4.192 23 C -0.087 4.087 24 C -0.120 4.120 25 C -0.152 4.152 26 C -0.148 4.148 27 C -0.147 4.147 28 C -0.146 4.146 29 C -0.076 4.076 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.008 0.992 34 H 0.003 0.997 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.033 0.967 38 H 0.160 0.840 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.140 0.860 47 H 0.149 0.851 48 H 0.154 0.846 49 H 0.155 0.845 50 H 0.147 0.853 51 H 0.062 0.938 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.146 6.132 29.141 29.856 hybrid contribution 1.846 -0.090 -1.270 2.243 sum -0.300 6.042 27.871 28.520 Atomic orbital electron populations 1.21463 0.94647 1.00304 1.00406 1.20998 0.96725 0.98305 0.93143 0.92952 1.19016 0.94009 0.94705 0.92792 1.21667 1.34166 1.08565 0.92083 0.92133 1.25958 0.95280 0.96146 1.02673 1.70110 1.40357 1.23029 1.24213 0.85454 0.78065 0.78910 0.78974 1.18577 1.20531 1.20505 1.21858 0.96185 0.97395 0.89472 1.60610 1.63693 1.05410 1.00548 1.22418 0.96276 0.95119 0.89781 0.94053 1.22556 0.99846 0.97802 0.94745 1.23241 1.01853 0.87801 0.95522 1.64790 1.42665 1.14294 1.01498 1.20775 0.97292 0.91640 0.89833 0.93225 1.21788 0.99072 1.01325 0.97044 1.19840 0.94533 0.94910 0.99377 1.21096 0.99216 0.93169 0.98477 1.21436 0.98465 0.95555 0.99738 1.21437 0.93802 1.00721 0.98851 1.21365 0.99762 0.93326 1.00280 1.21239 0.97150 0.96022 1.00199 1.22818 0.94393 0.98808 0.91592 0.94662 0.91550 0.94473 0.99194 0.99673 0.92957 0.92086 0.96702 0.83992 0.90752 0.91231 0.93066 0.88814 0.91438 0.91503 0.92072 0.86005 0.85096 0.84595 0.84473 0.85335 0.93791 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 8.89 71.98 0.64 -3.68 16 2 C -0.07 -3.02 2.48 -10.79 -0.03 -3.05 16 3 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 4 C 0.03 1.73 4.45 29.85 0.13 1.86 16 5 C -0.53 -30.18 8.41 25.60 0.22 -29.96 16 6 H 0.06 3.35 7.06 -2.91 -0.02 3.33 16 7 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 8 N -0.94 -57.82 13.29 21.45 0.28 -57.54 16 9 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 10 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 C 0.08 2.79 4.92 86.30 0.42 3.21 16 14 N -0.67 -19.01 5.73 -487.05 -2.79 -21.80 16 15 C 0.07 1.79 3.31 45.80 0.15 1.94 16 16 H 0.04 1.04 7.84 -2.39 -0.02 1.02 16 17 C -0.11 -2.43 6.75 31.86 0.22 -2.21 16 18 C 0.04 0.76 5.45 86.71 0.47 1.23 16 19 N -0.51 -9.65 4.57 -861.88 -3.94 -13.59 16 20 C 0.11 1.84 1.96 44.17 0.09 1.93 16 21 H 0.05 0.79 7.80 -2.38 -0.02 0.77 16 22 C -0.13 -1.83 8.83 71.98 0.64 -1.19 16 23 C -0.09 -1.53 4.11 -19.87 -0.08 -1.61 16 24 C -0.10 -1.92 9.21 22.27 0.21 -1.71 16 25 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 26 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 27 C -0.13 -1.96 10.05 22.27 0.22 -1.73 16 28 C -0.13 -2.07 9.67 22.27 0.22 -1.85 16 29 C 0.05 1.11 5.56 86.45 0.48 1.59 16 30 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.07 2.27 7.75 -2.39 -0.02 2.25 16 32 H 0.04 1.54 6.95 -2.38 -0.02 1.52 16 33 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 34 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 35 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.01 0.54 8.07 -2.39 -0.02 0.52 16 38 H 0.34 9.32 8.05 -89.70 -0.72 8.60 16 39 H 0.07 1.87 8.06 -2.39 -0.02 1.85 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 0.80 8.00 -2.39 -0.02 0.78 16 42 H 0.09 1.46 7.79 -2.39 -0.02 1.44 16 43 H 0.07 0.79 7.26 -2.39 -0.02 0.77 16 44 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 45 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 46 H 0.12 2.44 7.89 -2.91 -0.02 2.42 16 47 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 48 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 49 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 50 H 0.13 1.68 8.00 -2.91 -0.02 1.66 16 51 H 0.04 0.91 7.69 -2.39 -0.02 0.89 16 52 H 0.07 1.76 7.49 -2.38 -0.02 1.74 16 Total: -1.00 -64.41 407.35 0.61 -63.80 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.13 Total: 20.97 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 4.90 Total: -38.86 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -6.45 Total: -92.93 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -64.41 0.61 -63.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543378.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.332 kcal (2) G-P(sol) polarization free energy of solvation -64.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds