Wall clock time and date at job start Tue Mar 31 2020 11:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47152 * 2 1 4 4 C 1.53005 * 109.47158 * 240.00058 * 2 1 3 5 5 C 1.50700 * 109.47328 * 64.99977 * 4 2 1 6 6 H 1.07997 * 119.99927 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99896 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99859 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99882 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46955 * 90.00403 * 9 7 5 11 11 H 1.48498 * 109.47166 * 209.99833 * 9 7 5 12 12 H 1.48492 * 109.47333 * 330.00301 * 9 7 5 13 13 C 1.53006 * 109.47008 * 119.99814 * 2 1 3 14 14 N 1.46897 * 109.46777 * 295.00051 * 13 2 1 15 15 C 1.46900 * 110.99814 * 180.02562 * 14 13 2 16 16 H 1.09005 * 110.35167 * 327.13816 * 15 14 13 17 17 C 1.54594 * 110.31220 * 89.27941 * 15 14 13 18 18 C 1.54933 * 102.91997 * 140.87540 * 17 15 14 19 19 N 1.48813 * 103.35205 * 322.69117 * 18 17 15 20 20 C 1.46897 * 111.18681 * 159.50572 * 19 18 17 21 21 H 1.09005 * 109.46949 * 297.66461 * 20 19 18 22 22 C 1.53001 * 109.47297 * 177.66771 * 20 19 18 23 23 C 1.50701 * 109.47011 * 57.66268 * 20 19 18 24 24 C 1.38232 * 119.99959 * 39.73331 * 23 20 19 25 25 C 1.38238 * 119.99827 * 179.76501 * 24 23 20 26 26 C 1.38227 * 119.99931 * 0.50204 * 25 24 23 27 27 C 1.38234 * 120.00160 * 359.74498 * 26 25 24 28 28 C 1.38235 * 120.00110 * 0.02562 * 27 26 25 29 29 C 1.47905 * 105.67450 * 38.97719 * 19 18 17 30 30 H 1.08998 * 109.47620 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47418 * 300.00725 * 1 2 3 32 32 H 1.09001 * 109.47115 * 60.00103 * 1 2 3 33 33 H 1.09000 * 109.46693 * 185.00529 * 4 2 1 34 34 H 1.09000 * 109.46499 * 304.99473 * 4 2 1 35 35 H 0.96999 * 119.99915 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.46631 * 174.99965 * 13 2 1 37 37 H 1.08995 * 109.46860 * 54.99799 * 13 2 1 38 38 H 1.00899 * 111.00082 * 303.94895 * 14 13 2 39 39 H 1.08999 * 110.72754 * 259.23439 * 17 15 14 40 40 H 1.08998 * 110.72457 * 22.34007 * 17 15 14 41 41 H 1.08998 * 110.66828 * 81.02294 * 18 17 15 42 42 H 1.09004 * 110.66649 * 204.15215 * 18 17 15 43 43 H 1.08995 * 109.47199 * 59.99436 * 22 20 19 44 44 H 1.09000 * 109.47425 * 180.02562 * 22 20 19 45 45 H 1.09002 * 109.46764 * 300.00255 * 22 20 19 46 46 H 1.08002 * 119.99840 * 359.97438 * 24 23 20 47 47 H 1.07998 * 119.99915 * 180.22699 * 25 24 23 48 48 H 1.07999 * 119.99944 * 179.72671 * 26 25 24 49 49 H 1.08003 * 119.99788 * 179.97438 * 27 26 25 50 50 H 1.08001 * 120.00279 * 179.97438 * 28 27 26 51 51 H 1.09002 * 109.91668 * 215.45268 * 29 19 18 52 52 H 1.09002 * 109.91761 * 94.35443 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6747 -1.5199 -3.8511 9 14 1.4976 0.5620 -5.2497 10 1 2.5629 1.5415 -5.5831 11 1 1.3103 -0.3722 -6.3887 12 1 0.2266 1.2834 -4.9869 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0375 2.4456 15 6 2.1256 -0.6264 3.6672 16 1 2.1240 -1.7084 3.5356 17 6 3.5448 -0.1321 4.0300 18 6 3.4902 -0.0259 5.5748 19 7 2.1116 0.4696 5.8367 20 6 1.6978 0.1832 7.2167 21 1 1.6786 -0.8953 7.3739 22 6 0.3014 0.7590 7.4604 23 6 2.6753 0.8131 8.1752 24 6 3.1904 2.0685 7.9115 25 6 4.0833 2.6484 8.7932 26 6 4.4690 1.9685 9.9333 27 6 3.9578 0.7110 10.1944 28 6 3.0613 0.1331 9.3152 29 6 1.2436 -0.2325 4.8665 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.1263 -0.7995 -1.2055 34 1 1.6054 -1.7198 -1.2951 35 1 2.9213 -1.8432 -4.7318 36 1 3.1262 -0.7994 1.2056 37 1 1.6053 -1.7197 1.2952 38 1 1.9881 0.9874 2.3966 39 1 4.2970 -0.8574 3.7196 40 1 3.7409 0.8413 3.5805 41 1 3.6383 -1.0037 6.0331 42 1 4.2311 0.6865 5.9378 43 1 -0.4056 0.3034 6.7671 44 1 -0.0055 0.5469 8.4845 45 1 0.3206 1.8374 7.3031 46 1 2.8926 2.5976 7.0184 47 1 4.4830 3.6307 8.5891 48 1 5.1700 2.4197 10.6199 49 1 4.2596 0.1797 11.0850 50 1 2.6622 -0.8496 9.5190 51 1 0.4432 0.4300 4.5370 52 1 0.8205 -1.1261 5.3255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602543379.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:59 Heat of formation + Delta-G solvation = 13.693887 kcal Electronic energy + Delta-G solvation = -26091.756930 eV Core-core repulsion = 22668.982778 eV Total energy + Delta-G solvation = -3422.774152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.22678 -38.77132 -36.57895 -34.68214 -32.87057 -31.60051 -31.11310 -30.32159 -28.32535 -28.10788 -26.65300 -24.85649 -23.74849 -22.81291 -22.30104 -21.85297 -20.74661 -20.04640 -18.95977 -17.25614 -16.47042 -16.33863 -15.91350 -15.36921 -14.92559 -14.64812 -14.51032 -14.26048 -14.12175 -13.97668 -13.61103 -13.39990 -13.09296 -12.81554 -12.73080 -12.45056 -12.28911 -12.21475 -11.98359 -11.72081 -11.58278 -11.45423 -11.28675 -11.24241 -11.19040 -10.89598 -10.85088 -10.80385 -10.71430 -10.27008 -10.18972 -9.67971 -9.15325 -9.12011 -8.96153 -8.91882 -8.58511 -8.31169 -8.05715 -5.95984 -3.96904 1.08810 1.17316 3.34161 3.40445 3.44052 3.50579 3.76433 4.25989 4.45384 4.52892 4.57548 4.66105 4.72142 4.75850 4.91434 4.98208 5.07622 5.13848 5.24176 5.25297 5.35277 5.39774 5.42486 5.45818 5.53753 5.64705 5.71868 5.74503 5.81190 5.82330 5.82959 5.89338 5.93996 6.01912 6.10097 6.18893 6.20825 6.28766 6.35120 6.44826 6.58673 6.71659 6.71946 6.77232 6.91707 7.05192 7.21505 7.23502 7.41992 7.68694 7.72929 7.87799 8.04471 8.48697 9.09561 9.66353 11.15542 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.030396 B = 0.001995 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.941170 B =14028.414396 C =14244.217779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.677 5.677 15 C 0.079 3.921 16 H 0.079 0.921 17 C -0.153 4.153 18 C 0.041 3.959 19 N -0.509 5.509 20 C 0.113 3.887 21 H 0.048 0.952 22 C -0.139 4.139 23 C -0.077 4.077 24 C -0.092 4.092 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.123 4.123 28 C -0.118 4.118 29 C 0.046 3.954 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.012 0.988 34 H 0.016 0.984 35 H 0.259 0.741 36 H 0.024 0.976 37 H 0.064 0.936 38 H 0.341 0.659 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.132 0.868 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.117 0.883 51 H 0.093 0.907 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.186 3.923 29.215 29.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.307 5.307 15 C -0.032 4.032 16 H 0.098 0.902 17 C -0.192 4.192 18 C -0.087 4.087 19 N -0.234 5.234 20 C 0.004 3.996 21 H 0.066 0.934 22 C -0.196 4.196 23 C -0.077 4.077 24 C -0.110 4.110 25 C -0.143 4.143 26 C -0.142 4.142 27 C -0.142 4.142 28 C -0.137 4.137 29 C -0.082 4.082 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.160 0.840 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.150 0.850 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.135 0.865 51 H 0.112 0.888 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.561 4.079 29.037 29.327 hybrid contribution 0.942 -0.353 -0.774 1.269 sum 1.503 3.725 28.263 28.547 Atomic orbital electron populations 1.21583 0.95739 1.00502 1.00149 1.21197 0.95983 0.98907 0.94045 0.92857 1.19120 0.95860 0.95557 0.90488 1.21242 1.34517 1.08231 0.90988 0.92559 1.25029 0.95399 0.95109 0.99118 1.69967 1.39231 1.21181 1.23337 0.86624 0.78926 0.79789 0.82845 1.20785 1.21333 1.19880 1.22166 0.97165 0.97558 0.89527 1.60602 1.63433 1.05745 1.00942 1.22388 0.91410 0.98602 0.90815 0.90249 1.23258 0.98492 1.02072 0.95427 1.23168 0.91387 0.98507 0.95673 1.64896 1.02403 1.54187 1.01891 1.20726 0.94032 0.97056 0.87771 0.93418 1.21807 0.94300 1.02216 1.01310 1.19783 0.97585 0.95107 0.95220 1.21114 0.96053 0.94715 0.99154 1.21216 0.98294 1.00005 0.94750 1.21149 1.00177 0.95233 0.97651 1.21073 0.97836 0.95790 0.99454 1.21021 0.98223 0.99780 0.94629 1.22934 0.96504 0.97252 0.91528 0.94243 0.93901 0.92831 0.96993 0.96612 0.93137 0.95810 0.91733 0.83983 0.91165 0.90491 0.94043 0.90211 0.91989 0.92335 0.91527 0.85039 0.86177 0.86388 0.86313 0.86462 0.88829 0.93878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.08 -1.68 2.48 -90.62 -0.22 -1.90 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.40 8.41 -34.44 -0.29 -14.69 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.06 1.09 4.93 -3.82 -0.02 1.08 16 14 N -0.68 -9.52 5.66 -105.29 -0.60 -10.12 16 15 C 0.08 0.95 3.31 -66.36 -0.22 0.73 16 16 H 0.08 0.99 7.82 -51.93 -0.41 0.58 16 17 C -0.15 -1.67 6.72 -24.87 -0.17 -1.84 16 18 C 0.04 0.41 5.62 -1.74 -0.01 0.40 16 19 N -0.51 -5.07 4.43 -223.64 -0.99 -6.06 16 20 C 0.11 1.01 1.99 -68.87 -0.14 0.87 16 21 H 0.05 0.43 7.82 -51.93 -0.41 0.02 16 22 C -0.14 -1.15 9.16 37.16 0.34 -0.81 16 23 C -0.08 -0.69 4.08 -104.62 -0.43 -1.12 16 24 C -0.09 -0.84 8.28 -39.58 -0.33 -1.17 16 25 C -0.12 -1.03 10.05 -39.59 -0.40 -1.42 16 26 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 27 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 28 C -0.12 -0.98 9.67 -39.58 -0.38 -1.36 16 29 C 0.05 0.49 5.34 -2.75 -0.01 0.48 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 32 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 38 H 0.34 4.73 8.10 -39.29 -0.32 4.42 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.89 7.56 -51.93 -0.39 0.49 16 41 H 0.04 0.42 8.02 -51.93 -0.42 0.00 16 42 H 0.08 0.81 7.18 -51.93 -0.37 0.44 16 43 H 0.06 0.51 7.35 -51.93 -0.38 0.13 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.13 1.25 7.71 -52.49 -0.40 0.85 16 47 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 48 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 49 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 50 H 0.12 0.81 8.04 -52.49 -0.42 0.39 16 51 H 0.09 1.10 7.93 -51.93 -0.41 0.69 16 52 H 0.04 0.44 7.65 -51.93 -0.40 0.04 16 LS Contribution 405.75 15.07 6.11 6.11 Total: -1.00 -29.50 405.75 -12.39 -41.89 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -9.67 Total: 1.23 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -2.96 Total: -23.48 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: -0.85 Total: -42.57 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.50 -12.39 -41.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543379.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.582 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds