Wall clock time and date at job start Tue Mar 31 2020 11:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47152 * 2 1 4 4 C 1.53005 * 109.47158 * 240.00058 * 2 1 3 5 5 C 1.50700 * 109.47328 * 64.99977 * 4 2 1 6 6 H 1.07997 * 119.99927 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99896 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99859 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99882 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46955 * 90.00403 * 9 7 5 11 11 H 1.48498 * 109.47166 * 209.99833 * 9 7 5 12 12 H 1.48492 * 109.47333 * 330.00301 * 9 7 5 13 13 C 1.53006 * 109.47008 * 119.99814 * 2 1 3 14 14 N 1.46897 * 109.46777 * 295.00051 * 13 2 1 15 15 C 1.46900 * 110.99814 * 180.02562 * 14 13 2 16 16 H 1.09005 * 110.35167 * 327.13816 * 15 14 13 17 17 C 1.54594 * 110.31220 * 89.27941 * 15 14 13 18 18 C 1.54933 * 102.91997 * 140.87540 * 17 15 14 19 19 N 1.48813 * 103.35205 * 322.69117 * 18 17 15 20 20 C 1.46897 * 111.18681 * 159.50572 * 19 18 17 21 21 H 1.09005 * 109.46949 * 297.66461 * 20 19 18 22 22 C 1.53001 * 109.47297 * 177.66771 * 20 19 18 23 23 C 1.50701 * 109.47011 * 57.66268 * 20 19 18 24 24 C 1.38232 * 119.99959 * 39.73331 * 23 20 19 25 25 C 1.38238 * 119.99827 * 179.76501 * 24 23 20 26 26 C 1.38227 * 119.99931 * 0.50204 * 25 24 23 27 27 C 1.38234 * 120.00160 * 359.74498 * 26 25 24 28 28 C 1.38235 * 120.00110 * 0.02562 * 27 26 25 29 29 C 1.47905 * 105.67450 * 38.97719 * 19 18 17 30 30 H 1.08998 * 109.47620 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47418 * 300.00725 * 1 2 3 32 32 H 1.09001 * 109.47115 * 60.00103 * 1 2 3 33 33 H 1.09000 * 109.46693 * 185.00529 * 4 2 1 34 34 H 1.09000 * 109.46499 * 304.99473 * 4 2 1 35 35 H 0.96999 * 119.99915 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.46631 * 174.99965 * 13 2 1 37 37 H 1.08995 * 109.46860 * 54.99799 * 13 2 1 38 38 H 1.00899 * 111.00082 * 303.94895 * 14 13 2 39 39 H 1.08999 * 110.72754 * 259.23439 * 17 15 14 40 40 H 1.08998 * 110.72457 * 22.34007 * 17 15 14 41 41 H 1.08998 * 110.66828 * 81.02294 * 18 17 15 42 42 H 1.09004 * 110.66649 * 204.15215 * 18 17 15 43 43 H 1.08995 * 109.47199 * 59.99436 * 22 20 19 44 44 H 1.09000 * 109.47425 * 180.02562 * 22 20 19 45 45 H 1.09002 * 109.46764 * 300.00255 * 22 20 19 46 46 H 1.08002 * 119.99840 * 359.97438 * 24 23 20 47 47 H 1.07998 * 119.99915 * 180.22699 * 25 24 23 48 48 H 1.07999 * 119.99944 * 179.72671 * 26 25 24 49 49 H 1.08003 * 119.99788 * 179.97438 * 27 26 25 50 50 H 1.08001 * 120.00279 * 179.97438 * 28 27 26 51 51 H 1.09002 * 109.91668 * 215.45268 * 29 19 18 52 52 H 1.09002 * 109.91761 * 94.35443 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6747 -1.5199 -3.8511 9 14 1.4976 0.5620 -5.2497 10 1 2.5629 1.5415 -5.5831 11 1 1.3103 -0.3722 -6.3887 12 1 0.2266 1.2834 -4.9869 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0375 2.4456 15 6 2.1256 -0.6264 3.6672 16 1 2.1240 -1.7084 3.5356 17 6 3.5448 -0.1321 4.0300 18 6 3.4902 -0.0259 5.5748 19 7 2.1116 0.4696 5.8367 20 6 1.6978 0.1832 7.2167 21 1 1.6786 -0.8953 7.3739 22 6 0.3014 0.7590 7.4604 23 6 2.6753 0.8131 8.1752 24 6 3.1904 2.0685 7.9115 25 6 4.0833 2.6484 8.7932 26 6 4.4690 1.9685 9.9333 27 6 3.9578 0.7110 10.1944 28 6 3.0613 0.1331 9.3152 29 6 1.2436 -0.2325 4.8665 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.1263 -0.7995 -1.2055 34 1 1.6054 -1.7198 -1.2951 35 1 2.9213 -1.8432 -4.7318 36 1 3.1262 -0.7994 1.2056 37 1 1.6053 -1.7197 1.2952 38 1 1.9881 0.9874 2.3966 39 1 4.2970 -0.8574 3.7196 40 1 3.7409 0.8413 3.5805 41 1 3.6383 -1.0037 6.0331 42 1 4.2311 0.6865 5.9378 43 1 -0.4056 0.3034 6.7671 44 1 -0.0055 0.5469 8.4845 45 1 0.3206 1.8374 7.3031 46 1 2.8926 2.5976 7.0184 47 1 4.4830 3.6307 8.5891 48 1 5.1700 2.4197 10.6199 49 1 4.2596 0.1797 11.0850 50 1 2.6622 -0.8496 9.5190 51 1 0.4432 0.4300 4.5370 52 1 0.8205 -1.1261 5.3255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602543379.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:58 Heat of formation + Delta-G solvation = -1.668286 kcal Electronic energy + Delta-G solvation = -26092.423084 eV Core-core repulsion = 22668.982778 eV Total energy + Delta-G solvation = -3423.440306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.96534 -39.57856 -37.93443 -35.93450 -34.50292 -33.05314 -31.72458 -31.04545 -29.41629 -29.08006 -28.40442 -26.39016 -24.62456 -24.04997 -23.38492 -22.63498 -21.69089 -20.89338 -20.51430 -18.50639 -17.89535 -17.26594 -16.82361 -16.51667 -16.12988 -15.99521 -15.64804 -15.31378 -15.18417 -14.90915 -14.47924 -14.27791 -14.21720 -14.06024 -13.74192 -13.65758 -13.49004 -13.20093 -13.15150 -12.90583 -12.83660 -12.76642 -12.48163 -12.45301 -12.38613 -12.20091 -12.12562 -11.89213 -11.80731 -11.73684 -11.54674 -11.47127 -11.07319 -10.86475 -10.52766 -9.76190 -9.57301 -9.37890 -9.24523 -8.16924 -6.25807 0.47759 0.56246 1.40444 1.41416 1.52578 2.42467 2.84317 3.02608 3.16379 3.23198 3.67067 3.70631 3.85781 4.05036 4.12845 4.21146 4.23772 4.33353 4.34561 4.35453 4.38767 4.40921 4.52649 4.56017 4.66630 4.69208 4.75367 4.79513 4.88599 4.89811 4.95340 4.96199 5.00264 5.05008 5.07822 5.16096 5.18066 5.23275 5.31162 5.32869 5.48604 5.52860 5.57668 5.60397 5.68375 5.69955 5.82945 5.90123 5.91475 6.12350 6.16229 6.20676 6.33310 6.52986 6.90313 7.42290 8.95052 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.030396 B = 0.001995 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.941170 B =14028.414396 C =14244.217779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 H 0.053 0.947 4 C 0.032 3.968 5 C -0.528 4.528 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.080 3.920 14 N -0.672 5.672 15 C 0.079 3.921 16 H 0.076 0.924 17 C -0.149 4.149 18 C 0.049 3.951 19 N -0.512 5.512 20 C 0.114 3.886 21 H 0.050 0.950 22 C -0.134 4.134 23 C -0.085 4.085 24 C -0.105 4.105 25 C -0.133 4.133 26 C -0.130 4.130 27 C -0.128 4.128 28 C -0.127 4.127 29 C 0.054 3.946 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.036 0.964 33 H -0.015 1.015 34 H -0.011 1.011 35 H 0.261 0.739 36 H 0.017 0.983 37 H 0.060 0.940 38 H 0.345 0.655 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.122 0.878 47 H 0.132 0.868 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.129 0.871 51 H 0.086 0.914 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.813 4.800 30.678 31.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 H 0.071 0.929 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.202 4.202 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.188 1.188 13 C -0.049 4.049 14 N -0.303 5.303 15 C -0.032 4.032 16 H 0.094 0.906 17 C -0.189 4.189 18 C -0.079 4.079 19 N -0.237 5.237 20 C 0.006 3.994 21 H 0.068 0.932 22 C -0.192 4.192 23 C -0.086 4.086 24 C -0.123 4.123 25 C -0.151 4.151 26 C -0.148 4.148 27 C -0.146 4.146 28 C -0.145 4.145 29 C -0.074 4.074 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.004 0.996 34 H 0.008 0.992 35 H 0.070 0.930 36 H 0.035 0.965 37 H 0.078 0.922 38 H 0.164 0.836 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.140 0.860 47 H 0.150 0.850 48 H 0.155 0.845 49 H 0.156 0.844 50 H 0.147 0.853 51 H 0.105 0.895 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.183 4.968 30.524 30.926 hybrid contribution 1.093 -0.635 -1.157 1.714 sum 1.275 4.333 29.367 29.712 Atomic orbital electron populations 1.21478 0.94696 1.00313 1.00489 1.21011 0.96698 0.98379 0.93198 0.92885 1.19013 0.94032 0.94673 0.92795 1.21645 1.34324 1.08517 0.92082 0.92104 1.25967 0.95355 0.96135 1.02696 1.70102 1.40417 1.22875 1.24234 0.85500 0.79010 0.78357 0.78513 1.19924 1.20960 1.18751 1.21836 0.96494 0.97153 0.89432 1.60541 1.63506 1.05697 1.00519 1.22422 0.92334 0.98260 0.90184 0.90557 1.23190 0.97791 1.01675 0.96195 1.23071 0.91474 0.98596 0.94742 1.64886 1.02181 1.54141 1.02454 1.20743 0.94409 0.97212 0.87056 0.93190 1.21770 0.93931 1.01594 1.01900 1.19819 0.97895 0.95226 0.95640 1.21117 0.96854 0.95037 0.99295 1.21430 0.98142 1.00670 0.94879 1.21440 1.00292 0.95324 0.97697 1.21373 0.97346 0.95917 0.99952 1.21230 0.98427 1.00354 0.94513 1.22798 0.96066 0.97417 0.91123 0.94683 0.91362 0.94524 0.99650 0.99232 0.92988 0.96475 0.92171 0.83626 0.91182 0.91009 0.93794 0.90268 0.91998 0.91387 0.92322 0.85957 0.85019 0.84488 0.84369 0.85300 0.89550 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.31 8.89 71.98 0.64 -3.67 16 2 C -0.07 -3.02 2.48 -10.79 -0.03 -3.05 16 3 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 4 C 0.03 1.72 4.45 29.85 0.13 1.85 16 5 C -0.53 -30.07 8.41 25.60 0.22 -29.86 16 6 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 8 N -0.94 -57.62 13.29 21.45 0.28 -57.33 16 9 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 13 C 0.08 2.71 4.93 86.31 0.43 3.14 16 14 N -0.67 -18.24 5.66 -487.04 -2.76 -20.99 16 15 C 0.08 1.80 3.31 45.79 0.15 1.96 16 16 H 0.08 1.82 7.82 -2.38 -0.02 1.80 16 17 C -0.15 -3.14 6.72 31.80 0.21 -2.92 16 18 C 0.05 0.93 5.62 86.59 0.49 1.42 16 19 N -0.51 -9.64 4.43 -861.45 -3.81 -13.45 16 20 C 0.11 1.90 1.99 44.17 0.09 1.99 16 21 H 0.05 0.82 7.82 -2.38 -0.02 0.80 16 22 C -0.13 -2.06 9.16 71.98 0.66 -1.40 16 23 C -0.09 -1.44 4.08 -19.87 -0.08 -1.52 16 24 C -0.10 -1.83 8.28 22.27 0.18 -1.65 16 25 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 26 C -0.13 -1.76 10.05 22.27 0.22 -1.53 16 27 C -0.13 -1.72 10.05 22.27 0.22 -1.49 16 28 C -0.13 -1.89 9.67 22.27 0.22 -1.68 16 29 C 0.05 1.09 5.34 86.44 0.46 1.55 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 2.26 7.75 -2.39 -0.02 2.24 16 32 H 0.04 1.50 6.95 -2.39 -0.02 1.48 16 33 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 34 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 35 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.06 2.10 8.07 -2.39 -0.02 2.08 16 38 H 0.34 9.16 8.10 -89.69 -0.73 8.43 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.60 7.56 -2.39 -0.02 1.58 16 41 H 0.04 0.82 8.02 -2.39 -0.02 0.80 16 42 H 0.08 1.54 7.18 -2.38 -0.02 1.52 16 43 H 0.06 0.94 7.35 -2.39 -0.02 0.92 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.12 2.30 7.71 -2.91 -0.02 2.28 16 47 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 48 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 49 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 50 H 0.13 1.54 8.04 -2.91 -0.02 1.52 16 51 H 0.09 1.90 7.93 -2.39 -0.02 1.88 16 52 H 0.05 0.96 7.65 -2.39 -0.02 0.94 16 Total: -1.00 -63.25 405.75 0.77 -62.48 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.13 Total: 20.87 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 4.90 Total: -38.47 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -6.28 Total: -91.77 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -63.25 0.77 -62.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543379.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.813 kcal (2) G-P(sol) polarization free energy of solvation -63.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds