Wall clock time and date at job start Tue Mar 31 2020 11:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 C 1.52994 * 109.47216 * 119.99968 * 2 1 3 14 14 N 1.46895 * 109.47270 * 295.00157 * 13 2 1 15 15 C 1.46901 * 111.00119 * 179.97438 * 14 13 2 16 16 H 1.09001 * 110.27285 * 32.91222 * 15 14 13 17 17 C 1.54596 * 110.31035 * 270.71775 * 15 14 13 18 18 C 1.54936 * 102.92231 * 219.12416 * 17 15 14 19 19 N 1.48530 * 103.22667 * 37.41399 * 18 17 15 20 20 C 1.46906 * 111.00352 * 200.27776 * 19 18 17 21 21 H 1.09004 * 109.46582 * 67.39353 * 20 19 18 22 22 C 1.52999 * 109.47463 * 187.39483 * 20 19 18 23 23 C 1.50698 * 109.46921 * 307.39763 * 20 19 18 24 24 C 1.38231 * 119.99817 * 319.72441 * 23 20 19 25 25 C 1.38247 * 119.99837 * 179.74466 * 24 23 20 26 26 C 1.38231 * 119.99751 * 0.52858 * 25 24 23 27 27 C 1.38235 * 120.00259 * 359.74534 * 26 25 24 28 28 C 1.38235 * 120.00159 * 139.99166 * 23 20 19 29 29 C 1.47908 * 105.82226 * 320.79291 * 19 18 17 30 30 H 1.09001 * 109.46786 * 299.99917 * 1 2 3 31 31 H 1.09001 * 109.46849 * 59.99383 * 1 2 3 32 32 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 34 34 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 35 35 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.46945 * 55.00387 * 13 2 1 37 37 H 1.09002 * 109.47045 * 174.99748 * 13 2 1 38 38 H 1.00903 * 111.00409 * 303.94857 * 14 13 2 39 39 H 1.09000 * 110.72176 * 337.47959 * 17 15 14 40 40 H 1.09000 * 110.72445 * 100.76623 * 17 15 14 41 41 H 1.09000 * 110.66771 * 278.97860 * 18 17 15 42 42 H 1.09002 * 110.66879 * 155.84778 * 18 17 15 43 43 H 1.09005 * 109.46745 * 299.99869 * 22 20 19 44 44 H 1.08998 * 109.46974 * 59.99742 * 22 20 19 45 45 H 1.08998 * 109.46704 * 179.97438 * 22 20 19 46 46 H 1.08000 * 120.00461 * 359.97438 * 24 23 20 47 47 H 1.08000 * 119.99854 * 180.29518 * 25 24 23 48 48 H 1.07998 * 119.99849 * 179.76548 * 26 25 24 49 49 H 1.07994 * 120.00293 * 180.02562 * 27 26 25 50 50 H 1.07999 * 119.99591 * 0.02562 * 28 23 20 51 51 H 1.08998 * 109.91480 * 265.98157 * 29 19 18 52 52 H 1.08999 * 110.08200 * 144.77322 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9977 -0.3988 -3.7281 8 7 1.6545 0.2833 -4.7988 9 14 2.9681 -1.9854 -3.9026 10 1 2.0289 -3.1290 -4.0260 11 1 3.8217 -1.9127 -5.1157 12 1 3.8252 -2.1758 -2.7049 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6272 3.6671 16 1 3.0707 -1.1348 3.4786 17 6 1.0661 -1.6323 4.1759 18 6 1.1302 -1.4544 5.7137 19 7 1.3464 0.0058 5.8781 20 6 1.9039 0.3097 7.2029 21 1 2.9155 -0.0906 7.2718 22 6 1.9404 1.8257 7.4055 23 6 1.0415 -0.3188 8.2670 24 6 -0.3350 -0.2984 8.1422 25 6 -1.1260 -0.8796 9.1157 26 6 -0.5407 -1.4714 10.2193 27 6 0.8357 -1.4868 10.3470 28 6 1.6268 -0.9107 9.3706 29 6 2.2859 0.3978 4.8051 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7197 -1.2952 34 1 3.1263 -0.7993 -1.2057 35 1 1.9049 -0.0377 -5.6792 36 1 1.6054 -1.7198 1.2950 37 1 3.1263 -0.7995 1.2055 38 1 1.9882 0.9873 2.3967 39 1 0.0765 -1.3741 3.7987 40 1 1.3340 -2.6505 3.8939 41 1 1.9655 -2.0164 6.1315 42 1 0.1910 -1.7587 6.1757 43 1 2.5642 2.2802 6.6358 44 1 0.9289 2.2259 7.3365 45 1 2.3537 2.0510 8.3886 46 1 -0.7924 0.1682 7.2823 47 1 -2.2013 -0.8679 9.0158 48 1 -1.1587 -1.9221 10.9818 49 1 1.2930 -1.9495 11.2090 50 1 2.7021 -0.9224 9.4704 51 1 3.3087 0.3772 5.1813 52 1 2.0438 1.3967 4.4421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602543381.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:03 Heat of formation + Delta-G solvation = 18.993439 kcal Electronic energy + Delta-G solvation = -26176.112343 eV Core-core repulsion = 22753.567997 eV Total energy + Delta-G solvation = -3422.544346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.29400 -38.77311 -36.68151 -34.72060 -32.90410 -31.72141 -31.14471 -30.40512 -28.43487 -28.32731 -27.08679 -24.85787 -23.79011 -22.81475 -22.17598 -21.82676 -20.44871 -20.18224 -19.00180 -17.28960 -16.74887 -16.41178 -16.00969 -15.57928 -14.96473 -14.76164 -14.43696 -14.34997 -14.12146 -13.83460 -13.64578 -13.49037 -13.40311 -13.05876 -12.90149 -12.51472 -12.39884 -12.17853 -11.84770 -11.76570 -11.66889 -11.57121 -11.39305 -11.23291 -11.15852 -10.95738 -10.93485 -10.90049 -10.65543 -10.39309 -9.76729 -9.71723 -9.37391 -9.17420 -9.03485 -8.96965 -8.64639 -8.49854 -8.16389 -6.00113 -3.96751 1.06092 1.14846 3.32441 3.39669 3.43094 3.47431 3.71590 4.24435 4.33675 4.48275 4.50080 4.62594 4.72709 4.73941 4.89852 4.93117 5.02917 5.11842 5.20638 5.23869 5.32413 5.33317 5.36933 5.43758 5.52217 5.57476 5.60727 5.68405 5.73856 5.76742 5.80171 5.85078 5.88565 5.94256 6.06253 6.16986 6.22292 6.26743 6.32266 6.35716 6.45374 6.62327 6.68665 6.74656 6.86637 6.88664 7.07713 7.18971 7.30189 7.35203 7.49036 7.62641 7.85123 8.59777 9.05993 9.62861 11.13328 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.030929 B = 0.002068 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.093490 B =13534.192292 C =13608.868599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 H 0.059 0.941 4 C -0.009 4.009 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.062 3.938 14 N -0.674 5.674 15 C 0.076 3.924 16 H 0.046 0.954 17 C -0.112 4.112 18 C 0.038 3.962 19 N -0.502 5.502 20 C 0.111 3.889 21 H 0.048 0.952 22 C -0.137 4.137 23 C -0.078 4.078 24 C -0.093 4.093 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.123 4.123 28 C -0.118 4.118 29 C 0.039 3.961 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.022 0.978 38 H 0.339 0.661 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.039 0.961 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.132 0.868 47 H 0.121 0.879 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.117 0.883 51 H 0.043 0.957 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.259 -2.422 31.936 32.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.092 4.092 3 H 0.077 0.923 4 C -0.047 4.047 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.067 4.067 14 N -0.305 5.305 15 C -0.034 4.034 16 H 0.064 0.936 17 C -0.151 4.151 18 C -0.090 4.090 19 N -0.226 5.226 20 C 0.003 3.997 21 H 0.066 0.934 22 C -0.195 4.195 23 C -0.079 4.079 24 C -0.111 4.111 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.141 4.141 28 C -0.136 4.136 29 C -0.089 4.089 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.029 0.971 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.158 0.842 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.150 0.850 47 H 0.139 0.861 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.135 0.865 51 H 0.061 0.939 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.343 -2.396 31.732 31.851 hybrid contribution 2.355 -1.184 -0.184 2.643 sum 1.012 -3.581 31.548 31.766 Atomic orbital electron populations 1.21593 0.95216 1.00598 1.00722 1.21000 0.96400 0.98958 0.92850 0.92254 1.19614 0.95632 0.95903 0.93565 1.21141 1.35091 1.09621 0.89098 0.90806 1.25040 0.95724 0.96929 0.95991 1.69916 1.47282 1.39250 0.98003 0.86802 0.80624 0.84425 0.77534 1.20367 1.21525 1.19197 1.22218 0.96840 0.97857 0.89777 1.60631 1.63713 1.05413 1.00785 1.22359 0.96152 0.94616 0.90317 0.93604 1.22573 1.01052 0.98085 0.93406 1.23226 1.00982 0.88038 0.96721 1.64787 1.41914 1.14970 1.00974 1.20771 0.94797 0.96314 0.87857 0.93426 1.21786 1.03008 0.93388 1.01322 1.19767 0.94340 0.98457 0.95295 1.21133 0.92978 0.98232 0.98736 1.21223 0.99963 0.98585 0.94431 1.21156 0.94952 0.99881 0.98138 1.21072 0.93939 1.00147 0.98986 1.21013 0.99645 0.98666 0.94299 1.23058 0.94027 1.00025 0.91830 0.93574 0.92321 0.94292 0.97092 0.97044 0.92862 0.91618 0.95977 0.84219 0.89234 0.91671 0.94277 0.89902 0.92225 0.91442 0.92329 0.84961 0.86098 0.86351 0.86301 0.86488 0.93908 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.07 -1.43 2.48 -90.62 -0.22 -1.66 16 3 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.53 8.96 -34.44 -0.31 -14.84 16 6 H 0.07 2.25 7.30 -52.49 -0.38 1.87 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.91 -28.10 13.96 55.43 0.77 -27.33 16 9 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 13 C 0.06 1.00 4.92 -3.83 -0.02 0.98 16 14 N -0.67 -9.13 5.75 -105.30 -0.60 -9.74 16 15 C 0.08 0.88 3.33 -66.35 -0.22 0.66 16 16 H 0.05 0.55 7.82 -51.93 -0.41 0.14 16 17 C -0.11 -1.26 6.76 -24.87 -0.17 -1.43 16 18 C 0.04 0.38 5.45 -1.90 -0.01 0.37 16 19 N -0.50 -4.93 4.48 -223.88 -1.00 -5.93 16 20 C 0.11 0.96 2.07 -68.86 -0.14 0.82 16 21 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 22 C -0.14 -1.09 9.23 37.16 0.34 -0.75 16 23 C -0.08 -0.68 3.99 -104.63 -0.42 -1.10 16 24 C -0.09 -0.83 7.89 -39.58 -0.31 -1.14 16 25 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 26 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 27 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 28 C -0.12 -0.95 9.67 -39.58 -0.38 -1.33 16 29 C 0.04 0.39 5.50 -2.75 -0.02 0.37 16 30 H 0.05 0.80 7.75 -51.93 -0.40 0.40 16 31 H 0.06 1.26 6.95 -51.93 -0.36 0.89 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.01 0.26 7.58 -51.93 -0.39 -0.13 16 34 H 0.01 0.27 7.19 -51.93 -0.37 -0.10 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.02 0.36 8.07 -51.93 -0.42 -0.06 16 38 H 0.34 4.38 8.01 -39.29 -0.31 4.06 16 39 H 0.09 1.14 8.06 -51.93 -0.42 0.72 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.04 0.39 8.02 -51.93 -0.42 -0.03 16 42 H 0.08 0.83 6.81 -51.93 -0.35 0.48 16 43 H 0.06 0.46 7.52 -51.93 -0.39 0.07 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.13 1.24 7.73 -52.49 -0.41 0.84 16 47 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 48 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 49 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 50 H 0.12 0.78 8.04 -52.49 -0.42 0.36 16 51 H 0.04 0.40 7.57 -51.93 -0.39 0.01 16 52 H 0.09 0.89 7.46 -51.93 -0.39 0.50 16 LS Contribution 401.56 15.07 6.05 6.05 Total: -1.00 -30.27 401.56 -12.00 -42.27 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -9.61 Total: 1.03 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -2.94 Total: -23.66 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: -0.84 Total: -42.99 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.27 -12.00 -42.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543381.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.268 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds