Wall clock time and date at job start Tue Mar 31 2020 11:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 C 1.52994 * 109.47216 * 119.99968 * 2 1 3 14 14 N 1.46895 * 109.47270 * 295.00157 * 13 2 1 15 15 C 1.46901 * 111.00119 * 179.97438 * 14 13 2 16 16 H 1.09001 * 110.27285 * 32.91222 * 15 14 13 17 17 C 1.54596 * 110.31035 * 270.71775 * 15 14 13 18 18 C 1.54936 * 102.92231 * 219.12416 * 17 15 14 19 19 N 1.48530 * 103.22667 * 37.41399 * 18 17 15 20 20 C 1.46906 * 111.00352 * 200.27776 * 19 18 17 21 21 H 1.09004 * 109.46582 * 67.39353 * 20 19 18 22 22 C 1.52999 * 109.47463 * 187.39483 * 20 19 18 23 23 C 1.50698 * 109.46921 * 307.39763 * 20 19 18 24 24 C 1.38231 * 119.99817 * 319.72441 * 23 20 19 25 25 C 1.38247 * 119.99837 * 179.74466 * 24 23 20 26 26 C 1.38231 * 119.99751 * 0.52858 * 25 24 23 27 27 C 1.38235 * 120.00259 * 359.74534 * 26 25 24 28 28 C 1.38235 * 120.00159 * 139.99166 * 23 20 19 29 29 C 1.47908 * 105.82226 * 320.79291 * 19 18 17 30 30 H 1.09001 * 109.46786 * 299.99917 * 1 2 3 31 31 H 1.09001 * 109.46849 * 59.99383 * 1 2 3 32 32 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 34 34 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 35 35 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.46945 * 55.00387 * 13 2 1 37 37 H 1.09002 * 109.47045 * 174.99748 * 13 2 1 38 38 H 1.00903 * 111.00409 * 303.94857 * 14 13 2 39 39 H 1.09000 * 110.72176 * 337.47959 * 17 15 14 40 40 H 1.09000 * 110.72445 * 100.76623 * 17 15 14 41 41 H 1.09000 * 110.66771 * 278.97860 * 18 17 15 42 42 H 1.09002 * 110.66879 * 155.84778 * 18 17 15 43 43 H 1.09005 * 109.46745 * 299.99869 * 22 20 19 44 44 H 1.08998 * 109.46974 * 59.99742 * 22 20 19 45 45 H 1.08998 * 109.46704 * 179.97438 * 22 20 19 46 46 H 1.08000 * 120.00461 * 359.97438 * 24 23 20 47 47 H 1.08000 * 119.99854 * 180.29518 * 25 24 23 48 48 H 1.07998 * 119.99849 * 179.76548 * 26 25 24 49 49 H 1.07994 * 120.00293 * 180.02562 * 27 26 25 50 50 H 1.07999 * 119.99591 * 0.02562 * 28 23 20 51 51 H 1.08998 * 109.91480 * 265.98157 * 29 19 18 52 52 H 1.08999 * 110.08200 * 144.77322 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9977 -0.3988 -3.7281 8 7 1.6545 0.2833 -4.7988 9 14 2.9681 -1.9854 -3.9026 10 1 2.0289 -3.1290 -4.0260 11 1 3.8217 -1.9127 -5.1157 12 1 3.8252 -2.1758 -2.7049 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6272 3.6671 16 1 3.0707 -1.1348 3.4786 17 6 1.0661 -1.6323 4.1759 18 6 1.1302 -1.4544 5.7137 19 7 1.3464 0.0058 5.8781 20 6 1.9039 0.3097 7.2029 21 1 2.9155 -0.0906 7.2718 22 6 1.9404 1.8257 7.4055 23 6 1.0415 -0.3188 8.2670 24 6 -0.3350 -0.2984 8.1422 25 6 -1.1260 -0.8796 9.1157 26 6 -0.5407 -1.4714 10.2193 27 6 0.8357 -1.4868 10.3470 28 6 1.6268 -0.9107 9.3706 29 6 2.2859 0.3978 4.8051 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7197 -1.2952 34 1 3.1263 -0.7993 -1.2057 35 1 1.9049 -0.0377 -5.6792 36 1 1.6054 -1.7198 1.2950 37 1 3.1263 -0.7995 1.2055 38 1 1.9882 0.9873 2.3967 39 1 0.0765 -1.3741 3.7987 40 1 1.3340 -2.6505 3.8939 41 1 1.9655 -2.0164 6.1315 42 1 0.1910 -1.7587 6.1757 43 1 2.5642 2.2802 6.6358 44 1 0.9289 2.2259 7.3365 45 1 2.3537 2.0510 8.3886 46 1 -0.7924 0.1682 7.2823 47 1 -2.2013 -0.8679 9.0158 48 1 -1.1587 -1.9221 10.9818 49 1 1.2930 -1.9495 11.2090 50 1 2.7021 -0.9224 9.4704 51 1 3.3087 0.3772 5.1813 52 1 2.0438 1.3967 4.4421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602543381.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:02 Heat of formation + Delta-G solvation = 2.091678 kcal Electronic energy + Delta-G solvation = -26176.845259 eV Core-core repulsion = 22753.567997 eV Total energy + Delta-G solvation = -3423.277262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.99151 -39.54112 -37.98231 -35.89581 -34.50713 -33.22547 -31.73289 -31.08745 -29.78686 -29.14684 -28.57376 -26.28862 -24.53040 -23.83545 -23.38493 -22.70570 -21.29525 -21.00116 -20.54561 -18.92537 -17.89911 -17.15867 -16.89553 -16.47131 -16.28347 -15.91812 -15.59660 -15.28683 -15.18168 -14.97730 -14.85500 -14.46728 -14.28963 -14.15170 -13.79252 -13.76531 -13.45646 -13.27051 -13.12477 -12.88936 -12.78829 -12.63288 -12.57917 -12.40673 -12.25993 -12.09435 -12.01653 -11.82145 -11.74748 -11.70436 -11.55867 -11.43377 -11.14689 -10.99636 -10.73434 -9.76206 -9.57133 -9.41834 -9.23291 -8.25584 -6.27722 0.47371 0.55947 1.35833 1.37100 1.48854 2.37715 2.84109 3.02343 3.09394 3.23707 3.55317 3.71690 3.92655 4.04510 4.14699 4.21271 4.23682 4.29910 4.32672 4.35204 4.37131 4.45007 4.46909 4.57700 4.67044 4.69590 4.74659 4.75763 4.87043 4.89433 4.94167 4.95715 4.97253 5.00406 5.04431 5.11682 5.16510 5.22737 5.26778 5.36122 5.41141 5.43772 5.56931 5.59814 5.68383 5.69370 5.71979 5.74142 5.92061 6.13386 6.17142 6.22023 6.36262 6.53886 6.79986 7.35533 8.91127 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.030929 B = 0.002068 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.093490 B =13534.192292 C =13608.868599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.069 4.069 3 H 0.050 0.950 4 C -0.007 4.007 5 C -0.518 4.518 6 H 0.034 0.966 7 C -0.001 4.001 8 N -0.953 5.953 9 Si 0.949 3.051 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.247 1.247 13 C 0.077 3.923 14 N -0.676 5.676 15 C 0.077 3.923 16 H 0.049 0.951 17 C -0.111 4.111 18 C 0.047 3.953 19 N -0.509 5.509 20 C 0.113 3.887 21 H 0.052 0.948 22 C -0.133 4.133 23 C -0.087 4.087 24 C -0.105 4.105 25 C -0.133 4.133 26 C -0.129 4.129 27 C -0.128 4.128 28 C -0.126 4.126 29 C 0.044 3.956 30 H 0.065 0.935 31 H 0.025 0.975 32 H 0.041 0.959 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.264 0.736 36 H 0.067 0.933 37 H 0.026 0.974 38 H 0.343 0.657 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.043 0.957 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.067 0.933 46 H 0.121 0.879 47 H 0.132 0.868 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.130 0.870 51 H 0.054 0.946 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.940 -4.106 34.471 34.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 H 0.069 0.931 4 C -0.045 4.045 5 C -0.556 4.556 6 H 0.053 0.947 7 C -0.197 4.197 8 N -0.595 5.595 9 Si 0.772 3.228 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.171 1.171 13 C -0.052 4.052 14 N -0.308 5.308 15 C -0.033 4.033 16 H 0.066 0.934 17 C -0.149 4.149 18 C -0.080 4.080 19 N -0.234 5.234 20 C 0.005 3.995 21 H 0.070 0.930 22 C -0.191 4.191 23 C -0.087 4.087 24 C -0.123 4.123 25 C -0.151 4.151 26 C -0.147 4.147 27 C -0.146 4.146 28 C -0.144 4.144 29 C -0.084 4.084 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.163 0.837 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.139 0.861 47 H 0.150 0.850 48 H 0.155 0.845 49 H 0.157 0.843 50 H 0.147 0.853 51 H 0.072 0.928 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.147 -4.073 34.298 34.540 hybrid contribution 1.900 -0.571 -0.926 2.189 sum 1.753 -4.644 33.372 33.739 Atomic orbital electron populations 1.21483 0.95112 1.00560 1.00018 1.20876 0.96407 0.98451 0.93045 0.93141 1.19568 0.95809 0.95717 0.93364 1.21459 1.34129 1.08728 0.91252 0.94726 1.26024 0.97111 1.00989 0.95577 1.70075 1.49141 1.41560 0.98706 0.85680 0.79313 0.79540 0.78218 1.19364 1.21181 1.17089 1.21914 0.96795 0.97469 0.89008 1.60567 1.64004 1.05597 1.00637 1.22389 0.96206 0.94985 0.89734 0.93355 1.22526 0.99974 0.98194 0.94236 1.23112 1.01004 0.88221 0.95712 1.64778 1.42200 1.14851 1.01559 1.20781 0.94859 0.96671 0.87200 0.93038 1.21753 1.02482 0.92944 1.01923 1.19818 0.94255 0.98946 0.95708 1.21119 0.93355 0.98989 0.98886 1.21430 1.00642 0.98517 0.94511 1.21442 0.95400 0.99539 0.98294 1.21374 0.94050 0.99719 0.99421 1.21225 1.00483 0.98548 0.94188 1.22988 0.94692 0.99364 0.91385 0.91630 0.95554 0.93937 0.96629 0.96647 0.92713 0.91477 0.95592 0.83723 0.90862 0.91241 0.93890 0.90177 0.92028 0.92436 0.91427 0.86054 0.85027 0.84477 0.84349 0.85253 0.92796 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 8.89 71.98 0.64 -3.75 16 2 C -0.07 -2.66 2.48 -10.80 -0.03 -2.68 16 3 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 4 C -0.01 -0.31 3.52 29.85 0.10 -0.21 16 5 C -0.52 -30.03 8.96 25.60 0.23 -29.80 16 6 H 0.03 2.21 7.30 -2.91 -0.02 2.19 16 7 C 0.00 -0.06 5.47 84.66 0.46 0.40 16 8 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 9 Si 0.95 44.94 27.47 68.60 1.88 46.82 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 12 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 13 C 0.08 2.35 4.92 86.30 0.43 2.77 16 14 N -0.68 -17.17 5.75 -487.05 -2.80 -19.97 16 15 C 0.08 1.64 3.33 45.79 0.15 1.79 16 16 H 0.05 1.03 7.82 -2.39 -0.02 1.01 16 17 C -0.11 -2.30 6.76 31.80 0.21 -2.09 16 18 C 0.05 0.87 5.45 86.65 0.47 1.34 16 19 N -0.51 -9.29 4.48 -862.22 -3.87 -13.16 16 20 C 0.11 1.79 2.07 44.17 0.09 1.88 16 21 H 0.05 0.78 7.67 -2.38 -0.02 0.76 16 22 C -0.13 -1.94 9.23 71.98 0.66 -1.28 16 23 C -0.09 -1.41 3.99 -19.87 -0.08 -1.49 16 24 C -0.11 -1.80 7.89 22.27 0.18 -1.63 16 25 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 26 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 27 C -0.13 -1.64 10.05 22.27 0.22 -1.41 16 28 C -0.13 -1.79 9.67 22.27 0.22 -1.58 16 29 C 0.04 0.80 5.50 86.44 0.48 1.28 16 30 H 0.06 2.23 7.75 -2.39 -0.02 2.21 16 31 H 0.03 1.14 6.95 -2.39 -0.02 1.13 16 32 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.02 0.71 7.58 -2.38 -0.02 0.69 16 34 H 0.02 0.71 7.19 -2.39 -0.02 0.69 16 35 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.03 0.78 8.07 -2.39 -0.02 0.76 16 38 H 0.34 8.31 8.01 -89.69 -0.72 7.59 16 39 H 0.07 1.78 8.06 -2.39 -0.02 1.76 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.04 0.76 8.02 -2.39 -0.02 0.75 16 42 H 0.08 1.53 6.81 -2.39 -0.02 1.51 16 43 H 0.06 0.86 7.52 -2.38 -0.02 0.84 16 44 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.12 2.28 7.73 -2.91 -0.02 2.26 16 47 H 0.13 1.56 8.06 -2.91 -0.02 1.54 16 48 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 49 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 50 H 0.13 1.44 8.04 -2.91 -0.02 1.42 16 51 H 0.05 0.88 7.57 -2.39 -0.02 0.86 16 52 H 0.08 1.60 7.46 -2.39 -0.02 1.58 16 Total: -1.00 -65.71 401.56 0.49 -65.21 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.09 Total: 21.17 kcal Atomic # 6 Polarization: -44.55 SS G_CDS: 4.89 Total: -39.67 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -6.37 Total: -93.55 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Total: -65.71 0.49 -65.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543381.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.303 kcal (2) G-P(sol) polarization free energy of solvation -65.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds