Wall clock time and date at job start Tue Mar 31 2020 11:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47099 * 2 1 4 4 C 1.52998 * 109.47247 * 119.99810 * 2 1 3 5 5 C 1.50706 * 109.47348 * 295.00243 * 4 2 1 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00436 * 179.72505 * 5 4 2 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46683 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47426 * 119.99743 * 9 7 5 12 12 H 1.48501 * 109.46833 * 239.99986 * 9 7 5 13 13 C 1.52999 * 109.47615 * 240.00109 * 2 1 3 14 14 N 1.46900 * 109.47058 * 64.99480 * 13 2 1 15 15 C 1.46898 * 110.99982 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47279 * 180.02562 * 15 14 13 17 17 H 1.08996 * 109.90823 * 65.70088 * 16 15 14 18 18 C 1.53988 * 109.91947 * 186.80700 * 16 15 14 19 19 C 1.54588 * 105.14425 * 120.57512 * 18 16 15 20 20 C 1.54936 * 102.92183 * 21.95886 * 19 18 16 21 21 N 1.47900 * 109.91355 * 304.59926 * 16 15 14 22 22 C 1.46895 * 111.00304 * 94.80396 * 21 16 15 23 23 C 1.50699 * 109.47619 * 169.99588 * 22 21 16 24 24 C 1.38237 * 120.00308 * 269.73121 * 23 22 21 25 25 C 1.38234 * 120.00012 * 179.78777 * 24 23 22 26 26 C 1.38235 * 120.00041 * 0.43283 * 25 24 23 27 27 C 1.38239 * 120.00036 * 359.81954 * 26 25 24 28 28 C 1.38235 * 119.99668 * 89.99791 * 23 22 21 29 29 H 1.08997 * 109.46764 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47418 * 299.99897 * 1 2 3 31 31 H 1.08995 * 109.46959 * 60.00126 * 1 2 3 32 32 H 1.09001 * 109.47671 * 175.00452 * 4 2 1 33 33 H 1.08998 * 109.47454 * 55.00449 * 4 2 1 34 34 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 35 35 H 1.08993 * 109.47340 * 185.00053 * 13 2 1 36 36 H 1.09004 * 109.46801 * 304.99991 * 13 2 1 37 37 H 1.00899 * 111.00520 * 303.95719 * 14 13 2 38 38 H 1.09004 * 109.47147 * 300.00549 * 15 14 13 39 39 H 1.08999 * 109.47473 * 60.00265 * 15 14 13 40 40 H 1.09002 * 110.30930 * 239.49481 * 18 16 15 41 41 H 1.09004 * 110.31178 * 1.65834 * 18 16 15 42 42 H 1.09005 * 110.72529 * 140.31582 * 19 18 16 43 43 H 1.08998 * 110.72731 * 263.42058 * 19 18 16 44 44 H 1.08996 * 110.66645 * 81.01781 * 20 19 18 45 45 H 1.09003 * 110.66832 * 203.98931 * 20 19 18 46 46 H 1.09000 * 109.47049 * 289.99927 * 22 21 16 47 47 H 1.09007 * 109.47169 * 49.99425 * 22 21 16 48 48 H 1.08000 * 119.99648 * 359.97438 * 24 23 22 49 49 H 1.07998 * 120.00082 * 180.27240 * 25 24 23 50 50 H 1.07993 * 119.99866 * 179.83652 * 26 25 24 51 51 H 1.07999 * 120.00038 * 180.02562 * 27 26 25 52 52 H 1.07999 * 120.00115 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9746 2.3756 7 6 1.9879 -0.4048 3.7286 8 7 2.6660 -1.5249 3.8518 9 14 1.4931 0.5596 5.2500 10 1 0.7420 1.7743 4.8434 11 1 0.6338 -0.2877 6.1154 12 1 2.7106 0.9590 6.0005 13 6 2.0401 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1249 -0.6271 -3.6672 16 6 1.7026 0.1909 -4.8892 17 1 2.2132 1.1539 -4.8858 18 6 2.0428 -0.5787 -6.1788 19 6 0.6911 -0.7685 -6.9044 20 6 -0.1869 0.3567 -6.3014 21 7 0.2381 0.3972 -4.8757 22 6 -0.1068 1.6832 -4.2553 23 6 -1.5692 1.9718 -4.4769 24 6 -1.9734 2.6733 -5.5974 25 6 -3.3153 2.9341 -5.8028 26 6 -4.2522 2.5014 -4.8831 27 6 -3.8476 1.8044 -3.7599 28 6 -2.5060 1.5399 -3.5567 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.1264 -0.7994 1.2057 33 1 1.6055 -1.7198 1.2952 34 1 2.9095 -1.8501 4.7326 35 1 3.1264 -0.7994 -1.2055 36 1 1.6055 -1.7198 -1.2951 37 1 0.6529 0.1793 -2.4754 38 1 3.2118 -0.7050 -3.6404 39 1 1.6906 -1.6249 -3.7297 40 1 2.7259 0.0032 -6.7976 41 1 2.4816 -1.5468 -5.9371 42 1 0.8079 -0.6322 -7.9796 43 1 0.2699 -1.7496 -6.6850 44 1 0.0202 1.3093 -6.7889 45 1 -1.2444 0.1055 -6.3838 46 1 0.0963 1.6366 -3.1854 47 1 0.4920 2.4756 -4.7046 48 1 -1.2410 3.0148 -6.3139 49 1 -3.6315 3.4783 -6.6805 50 1 -5.3003 2.7075 -5.0423 51 1 -4.5796 1.4660 -3.0416 52 1 -2.1899 0.9953 -2.6793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548651.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:52 Heat of formation + Delta-G solvation = 13.671665 kcal Electronic energy + Delta-G solvation = -26805.718475 eV Core-core repulsion = 23382.943359 eV Total energy + Delta-G solvation = -3422.775116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.08032 -38.70179 -36.62322 -33.88292 -33.51434 -31.98242 -31.02917 -30.23340 -29.45995 -26.85622 -25.92666 -25.40315 -23.68868 -22.76999 -22.16975 -21.39720 -20.73908 -20.25255 -18.84145 -16.98378 -16.59636 -16.25804 -15.89950 -15.54867 -15.19028 -14.95079 -14.56865 -14.12993 -13.96595 -13.71429 -13.46167 -13.29805 -13.25924 -12.95598 -12.88428 -12.47912 -12.29594 -12.16727 -11.88481 -11.63538 -11.48514 -11.37811 -11.28278 -11.08750 -10.98175 -10.84793 -10.78073 -10.73368 -10.63060 -10.28092 -10.10069 -9.66398 -9.10791 -9.03320 -8.96152 -8.89680 -8.49205 -8.29725 -8.00189 -5.94249 -3.95078 1.19417 1.28737 3.34334 3.41866 3.46070 3.54863 4.00412 4.31804 4.43269 4.51079 4.69965 4.72908 4.77266 4.81617 4.88874 4.98772 5.11913 5.19609 5.29918 5.37310 5.40205 5.41653 5.50985 5.57061 5.59950 5.64087 5.68461 5.79743 5.81646 5.88430 5.90083 5.91303 5.96165 6.05148 6.09943 6.13255 6.30751 6.35079 6.39451 6.51686 6.53815 6.63098 6.77022 6.86459 6.93927 7.02223 7.16028 7.23345 7.49182 7.74387 7.81767 7.92074 8.06665 8.50714 9.11668 9.68191 11.17353 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012786 B = 0.003045 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.353135 B = 9192.956481 C =11038.046495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 H 0.063 0.937 4 C 0.028 3.972 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.693 5.693 15 C 0.074 3.926 16 C 0.067 3.933 17 H 0.060 0.940 18 C -0.126 4.126 19 C -0.124 4.124 20 C 0.038 3.962 21 N -0.506 5.506 22 C 0.081 3.919 23 C -0.078 4.078 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.120 4.120 28 C -0.096 4.096 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.029 0.971 32 H 0.014 0.986 33 H 0.014 0.986 34 H 0.258 0.742 35 H 0.064 0.936 36 H 0.022 0.978 37 H 0.344 0.656 38 H 0.069 0.931 39 H 0.031 0.969 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.042 0.958 45 H 0.080 0.920 46 H 0.102 0.898 47 H 0.044 0.956 48 H 0.115 0.885 49 H 0.118 0.882 50 H 0.118 0.882 51 H 0.122 0.878 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 5.293 -24.772 26.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 H 0.082 0.918 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.327 5.327 15 C -0.056 4.056 16 C -0.041 4.041 17 H 0.078 0.922 18 C -0.165 4.165 19 C -0.162 4.162 20 C -0.090 4.090 21 N -0.231 5.231 22 C -0.046 4.046 23 C -0.079 4.079 24 C -0.134 4.134 25 C -0.142 4.142 26 C -0.142 4.142 27 C -0.138 4.138 28 C -0.115 4.115 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.033 0.967 33 H 0.032 0.968 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.166 0.834 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.061 0.939 45 H 0.098 0.902 46 H 0.120 0.880 47 H 0.062 0.938 48 H 0.134 0.866 49 H 0.136 0.864 50 H 0.136 0.864 51 H 0.140 0.860 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.189 5.205 -24.281 26.148 hybrid contribution -0.446 0.342 0.452 0.721 sum -8.635 5.548 -23.829 25.946 Atomic orbital electron populations 1.21730 0.96764 1.00424 1.00044 1.21207 0.94799 0.99979 0.94250 0.91806 1.19111 0.96088 0.95375 0.90401 1.21286 1.34491 1.08136 0.90978 0.92532 1.25021 0.95411 0.95083 0.99086 1.69980 1.39489 1.21057 1.23189 0.86586 0.78242 0.80141 0.83346 1.19746 1.21147 1.21119 1.22115 1.00103 0.94528 0.89730 1.60753 1.20402 1.50174 1.01343 1.21930 0.99426 0.95166 0.89055 1.22486 0.87999 0.98792 0.94840 0.92184 1.22431 0.97538 1.00959 0.95565 1.22471 0.95224 0.99450 0.99044 1.23256 1.00060 0.97368 0.88283 1.64820 1.12250 1.30792 1.15231 1.21421 0.91159 0.90020 1.02011 1.19821 0.95358 0.97822 0.94871 1.21048 0.95929 0.99245 0.97191 1.21071 0.93169 1.00597 0.99404 1.21136 0.99364 0.98849 0.94823 1.21199 0.96087 0.98834 0.97687 1.21143 0.92666 0.98519 0.99137 0.94020 0.91947 0.95154 0.96727 0.96766 0.93200 0.91740 0.95963 0.83429 0.91220 0.95057 0.91467 0.90734 0.91308 0.90830 0.93926 0.90197 0.88044 0.93823 0.86650 0.86407 0.86380 0.86032 0.85592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.77 37.16 0.33 -2.18 16 2 C -0.08 -1.73 2.54 -90.62 -0.23 -1.96 16 3 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 13 C 0.06 1.14 5.14 -3.82 -0.02 1.12 16 14 N -0.69 -10.45 5.95 -113.78 -0.68 -11.13 16 15 C 0.07 0.95 5.21 -3.83 -0.02 0.93 16 16 C 0.07 0.73 2.85 -66.65 -0.19 0.54 16 17 H 0.06 0.68 7.57 -51.93 -0.39 0.29 16 18 C -0.13 -1.10 6.57 -25.38 -0.17 -1.27 16 19 C -0.12 -1.02 7.06 -24.87 -0.18 -1.20 16 20 C 0.04 0.35 4.99 -1.74 -0.01 0.34 16 21 N -0.51 -5.51 4.60 -223.76 -1.03 -6.54 16 22 C 0.08 0.90 4.72 -4.98 -0.02 0.88 16 23 C -0.08 -0.84 4.60 -104.62 -0.48 -1.32 16 24 C -0.12 -1.10 8.37 -39.58 -0.33 -1.43 16 25 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 26 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 27 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 28 C -0.10 -1.07 9.70 -39.58 -0.38 -1.46 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 31 H 0.03 0.48 6.68 -51.93 -0.35 0.14 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.34 5.11 4.13 -39.29 -0.16 4.95 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.64 7.69 -51.93 -0.40 0.24 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.04 0.37 7.12 -51.93 -0.37 0.00 16 45 H 0.08 0.79 7.77 -51.93 -0.40 0.39 16 46 H 0.10 1.28 5.72 -51.93 -0.30 0.98 16 47 H 0.04 0.47 7.75 -51.93 -0.40 0.07 16 48 H 0.12 0.95 7.42 -52.49 -0.39 0.56 16 49 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 50 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 51 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 52 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 399.64 15.07 6.02 6.02 Total: -1.00 -30.10 399.64 -12.75 -42.84 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -9.37 Total: 2.71 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -3.41 Total: -24.27 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.97 Total: -44.18 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.10 -12.75 -42.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548651.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.516 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds