Wall clock time and date at job start Tue Mar 31 2020 11:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47099 * 2 1 4 4 C 1.52998 * 109.47247 * 119.99810 * 2 1 3 5 5 C 1.50706 * 109.47348 * 295.00243 * 4 2 1 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00436 * 179.72505 * 5 4 2 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46683 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47426 * 119.99743 * 9 7 5 12 12 H 1.48501 * 109.46833 * 239.99986 * 9 7 5 13 13 C 1.52999 * 109.47615 * 240.00109 * 2 1 3 14 14 N 1.46900 * 109.47058 * 64.99480 * 13 2 1 15 15 C 1.46898 * 110.99982 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47279 * 180.02562 * 15 14 13 17 17 H 1.08996 * 109.90823 * 65.70088 * 16 15 14 18 18 C 1.53988 * 109.91947 * 186.80700 * 16 15 14 19 19 C 1.54588 * 105.14425 * 120.57512 * 18 16 15 20 20 C 1.54936 * 102.92183 * 21.95886 * 19 18 16 21 21 N 1.47900 * 109.91355 * 304.59926 * 16 15 14 22 22 C 1.46895 * 111.00304 * 94.80396 * 21 16 15 23 23 C 1.50699 * 109.47619 * 169.99588 * 22 21 16 24 24 C 1.38237 * 120.00308 * 269.73121 * 23 22 21 25 25 C 1.38234 * 120.00012 * 179.78777 * 24 23 22 26 26 C 1.38235 * 120.00041 * 0.43283 * 25 24 23 27 27 C 1.38239 * 120.00036 * 359.81954 * 26 25 24 28 28 C 1.38235 * 119.99668 * 89.99791 * 23 22 21 29 29 H 1.08997 * 109.46764 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47418 * 299.99897 * 1 2 3 31 31 H 1.08995 * 109.46959 * 60.00126 * 1 2 3 32 32 H 1.09001 * 109.47671 * 175.00452 * 4 2 1 33 33 H 1.08998 * 109.47454 * 55.00449 * 4 2 1 34 34 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 35 35 H 1.08993 * 109.47340 * 185.00053 * 13 2 1 36 36 H 1.09004 * 109.46801 * 304.99991 * 13 2 1 37 37 H 1.00899 * 111.00520 * 303.95719 * 14 13 2 38 38 H 1.09004 * 109.47147 * 300.00549 * 15 14 13 39 39 H 1.08999 * 109.47473 * 60.00265 * 15 14 13 40 40 H 1.09002 * 110.30930 * 239.49481 * 18 16 15 41 41 H 1.09004 * 110.31178 * 1.65834 * 18 16 15 42 42 H 1.09005 * 110.72529 * 140.31582 * 19 18 16 43 43 H 1.08998 * 110.72731 * 263.42058 * 19 18 16 44 44 H 1.08996 * 110.66645 * 81.01781 * 20 19 18 45 45 H 1.09003 * 110.66832 * 203.98931 * 20 19 18 46 46 H 1.09000 * 109.47049 * 289.99927 * 22 21 16 47 47 H 1.09007 * 109.47169 * 49.99425 * 22 21 16 48 48 H 1.08000 * 119.99648 * 359.97438 * 24 23 22 49 49 H 1.07998 * 120.00082 * 180.27240 * 25 24 23 50 50 H 1.07993 * 119.99866 * 179.83652 * 26 25 24 51 51 H 1.07999 * 120.00038 * 180.02562 * 27 26 25 52 52 H 1.07999 * 120.00115 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9746 2.3756 7 6 1.9879 -0.4048 3.7286 8 7 2.6660 -1.5249 3.8518 9 14 1.4931 0.5596 5.2500 10 1 0.7420 1.7743 4.8434 11 1 0.6338 -0.2877 6.1154 12 1 2.7106 0.9590 6.0005 13 6 2.0401 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1249 -0.6271 -3.6672 16 6 1.7026 0.1909 -4.8892 17 1 2.2132 1.1539 -4.8858 18 6 2.0428 -0.5787 -6.1788 19 6 0.6911 -0.7685 -6.9044 20 6 -0.1869 0.3567 -6.3014 21 7 0.2381 0.3972 -4.8757 22 6 -0.1068 1.6832 -4.2553 23 6 -1.5692 1.9718 -4.4769 24 6 -1.9734 2.6733 -5.5974 25 6 -3.3153 2.9341 -5.8028 26 6 -4.2522 2.5014 -4.8831 27 6 -3.8476 1.8044 -3.7599 28 6 -2.5060 1.5399 -3.5567 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.1264 -0.7994 1.2057 33 1 1.6055 -1.7198 1.2952 34 1 2.9095 -1.8501 4.7326 35 1 3.1264 -0.7994 -1.2055 36 1 1.6055 -1.7198 -1.2951 37 1 0.6529 0.1793 -2.4754 38 1 3.2118 -0.7050 -3.6404 39 1 1.6906 -1.6249 -3.7297 40 1 2.7259 0.0032 -6.7976 41 1 2.4816 -1.5468 -5.9371 42 1 0.8079 -0.6322 -7.9796 43 1 0.2699 -1.7496 -6.6850 44 1 0.0202 1.3093 -6.7889 45 1 -1.2444 0.1055 -6.3838 46 1 0.0963 1.6366 -3.1854 47 1 0.4920 2.4756 -4.7046 48 1 -1.2410 3.0148 -6.3139 49 1 -3.6315 3.4783 -6.6805 50 1 -5.3003 2.7075 -5.0423 51 1 -4.5796 1.4660 -3.0416 52 1 -2.1899 0.9953 -2.6793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602548651.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:51 Heat of formation + Delta-G solvation = -2.400107 kcal Electronic energy + Delta-G solvation = -26806.415399 eV Core-core repulsion = 23382.943359 eV Total energy + Delta-G solvation = -3423.472040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87871 -39.49428 -38.13161 -35.52070 -34.33868 -33.83088 -31.75558 -31.02100 -30.54718 -28.76708 -27.08600 -26.53783 -25.09378 -23.81062 -23.36613 -22.28038 -21.47344 -21.22591 -20.47378 -18.53802 -17.74848 -17.38491 -16.82641 -16.63269 -16.38010 -16.02137 -15.85714 -15.36275 -15.30908 -14.85353 -14.42080 -14.31060 -14.15866 -14.09748 -13.97578 -13.78759 -13.61165 -13.33584 -13.20311 -12.95008 -12.79479 -12.66356 -12.53657 -12.32540 -12.21690 -12.13411 -11.93234 -11.79039 -11.75337 -11.56133 -11.49830 -11.42699 -11.06011 -10.87562 -10.53618 -9.76652 -9.71295 -9.38023 -9.21140 -8.16963 -6.26010 0.45913 0.55137 1.40033 1.40374 1.53631 2.42427 2.79286 3.16444 3.21061 3.27207 3.66633 3.86243 3.96197 4.00078 4.09859 4.19121 4.20913 4.23159 4.30340 4.33493 4.40975 4.42078 4.49004 4.63011 4.68027 4.69921 4.74797 4.80242 4.83236 4.86328 4.90857 4.94202 4.99913 5.04243 5.10452 5.17295 5.19656 5.23374 5.26552 5.33381 5.39096 5.47032 5.56047 5.59841 5.67043 5.75359 5.80574 5.89703 5.96243 6.08190 6.16757 6.17140 6.32823 6.57703 6.90027 7.42206 8.95428 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012786 B = 0.003045 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.353135 B = 9192.956481 C =11038.046495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.074 4.074 3 H 0.056 0.944 4 C 0.034 3.966 5 C -0.527 4.527 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.077 3.923 14 N -0.689 5.689 15 C 0.075 3.925 16 C 0.071 3.929 17 H 0.056 0.944 18 C -0.122 4.122 19 C -0.119 4.119 20 C 0.041 3.959 21 N -0.518 5.518 22 C 0.088 3.912 23 C -0.088 4.088 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.127 4.127 27 C -0.131 4.131 28 C -0.117 4.117 29 H 0.038 0.962 30 H 0.046 0.954 31 H 0.060 0.940 32 H -0.013 1.013 33 H -0.012 1.012 34 H 0.262 0.738 35 H 0.057 0.943 36 H 0.017 0.983 37 H 0.347 0.653 38 H 0.072 0.928 39 H 0.026 0.974 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.046 0.954 48 H 0.129 0.871 49 H 0.142 0.858 50 H 0.140 0.860 51 H 0.131 0.869 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.731 6.714 -26.579 29.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.093 4.093 3 H 0.075 0.925 4 C -0.004 4.004 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.053 4.053 14 N -0.323 5.323 15 C -0.055 4.055 16 C -0.038 4.038 17 H 0.074 0.926 18 C -0.161 4.161 19 C -0.157 4.157 20 C -0.086 4.086 21 N -0.243 5.243 22 C -0.040 4.040 23 C -0.089 4.089 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.145 4.145 27 C -0.149 4.149 28 C -0.136 4.136 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.005 0.995 33 H 0.007 0.993 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.169 0.831 38 H 0.090 0.910 39 H 0.044 0.956 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.064 0.936 48 H 0.147 0.853 49 H 0.160 0.840 50 H 0.158 0.842 51 H 0.149 0.851 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.374 6.634 -26.109 28.523 hybrid contribution -0.088 -0.114 0.970 0.981 sum -9.463 6.520 -25.139 27.641 Atomic orbital electron populations 1.21614 0.95167 1.00457 1.00784 1.21002 0.96037 0.98942 0.93301 0.92539 1.18994 0.94182 0.94515 0.92679 1.21664 1.34388 1.08420 0.92023 0.92100 1.25955 0.95306 0.96091 1.02658 1.70113 1.40637 1.22758 1.24181 0.85452 0.78075 0.78901 0.78968 1.18554 1.20500 1.20542 1.21829 0.99449 0.94111 0.89890 1.60713 1.20650 1.49776 1.01179 1.22012 0.99525 0.95159 0.88829 1.22423 0.88082 0.98493 0.94764 0.92551 1.22421 0.98156 1.00904 0.94589 1.22467 0.94442 0.98672 1.00128 1.23241 0.99835 0.98217 0.87317 1.64764 1.12193 1.30807 1.16524 1.21285 0.91664 0.90217 1.00835 1.19839 0.94946 0.98559 0.95521 1.21224 0.96749 0.98840 0.96931 1.21403 0.92801 1.00081 1.00020 1.21447 1.00677 0.98113 0.94289 1.21400 0.95832 0.99133 0.98518 1.21195 0.93561 0.99534 0.99323 0.94308 0.93454 0.92105 0.99512 0.99329 0.92959 0.92466 0.96509 0.83134 0.90978 0.95592 0.89931 0.90661 0.89278 0.91475 0.93003 0.90868 0.89971 0.93606 0.85320 0.83995 0.84221 0.85095 0.86681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.69 8.77 71.98 0.63 -4.06 16 2 C -0.07 -3.14 2.54 -10.79 -0.03 -3.17 16 3 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 4 C 0.03 1.83 4.45 29.85 0.13 1.96 16 5 C -0.53 -30.37 8.41 25.60 0.22 -30.16 16 6 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 7 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 8 N -0.94 -58.11 13.29 21.45 0.28 -57.82 16 9 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 10 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 13 C 0.08 2.80 5.14 86.30 0.44 3.24 16 14 N -0.69 -20.73 5.95 -513.89 -3.06 -23.79 16 15 C 0.07 1.87 5.21 86.30 0.45 2.32 16 16 C 0.07 1.45 2.85 45.06 0.13 1.58 16 17 H 0.06 1.20 7.57 -2.39 -0.02 1.19 16 18 C -0.12 -1.88 6.57 31.47 0.21 -1.68 16 19 C -0.12 -1.70 7.06 31.80 0.22 -1.47 16 20 C 0.04 0.69 4.99 86.59 0.43 1.12 16 21 N -0.52 -10.74 4.60 -861.86 -3.96 -14.71 16 22 C 0.09 1.89 4.72 85.56 0.40 2.29 16 23 C -0.09 -1.83 4.60 -19.87 -0.09 -1.92 16 24 C -0.12 -2.05 8.37 22.27 0.19 -1.86 16 25 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 26 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 27 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 28 C -0.12 -2.59 9.70 22.27 0.22 -2.38 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.93 6.95 -2.39 -0.02 1.92 16 31 H 0.06 1.94 6.68 -2.39 -0.02 1.92 16 32 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 33 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.35 10.23 4.13 -89.69 -0.37 9.86 16 38 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 1.17 7.69 -2.39 -0.02 1.15 16 42 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 44 H 0.05 0.78 7.12 -2.39 -0.02 0.76 16 45 H 0.07 1.34 7.77 -2.39 -0.02 1.32 16 46 H 0.08 2.07 5.72 -2.39 -0.01 2.05 16 47 H 0.05 0.94 7.75 -2.38 -0.02 0.93 16 48 H 0.13 1.81 7.42 -2.91 -0.02 1.79 16 49 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 50 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 51 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 52 H 0.12 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -65.53 399.64 0.47 -65.06 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.49 Total: 23.74 kcal Atomic # 6 Polarization: -44.38 SS G_CDS: 4.69 Total: -39.70 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -6.74 Total: -96.32 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -65.53 0.47 -65.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548651.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.664 kcal (2) G-P(sol) polarization free energy of solvation -65.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds