Wall clock time and date at job start Tue Mar 31 2020 11:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47332 * 2 1 4 4 C 1.53003 * 109.46917 * 240.00115 * 2 1 3 5 5 C 1.50700 * 109.46956 * 65.00113 * 4 2 1 6 6 H 1.08006 * 119.99951 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00189 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00098 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99722 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46960 * 90.00373 * 9 7 5 11 11 H 1.48499 * 109.47285 * 210.00001 * 9 7 5 12 12 H 1.48503 * 109.47288 * 330.00453 * 9 7 5 13 13 C 1.53003 * 109.47251 * 120.00395 * 2 1 3 14 14 N 1.46891 * 109.46890 * 294.99666 * 13 2 1 15 15 C 1.46900 * 110.99908 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47410 * 180.02562 * 15 14 13 17 17 H 1.09002 * 109.88432 * 53.43203 * 16 15 14 18 18 C 1.54319 * 109.89354 * 174.63765 * 16 15 14 19 19 C 1.55141 * 103.02289 * 141.68775 * 18 16 15 20 20 C 1.54908 * 101.64966 * 324.34334 * 19 18 16 21 21 N 1.47449 * 109.88881 * 292.40409 * 16 15 14 22 22 C 1.46907 * 110.99381 * 3.84968 * 21 16 15 23 23 C 1.50703 * 109.46523 * 176.76627 * 22 21 16 24 24 C 1.38230 * 120.00436 * 269.72401 * 23 22 21 25 25 C 1.38231 * 120.00493 * 179.79193 * 24 23 22 26 26 C 1.38240 * 119.99894 * 0.44397 * 25 24 23 27 27 C 1.38235 * 119.99512 * 359.81258 * 26 25 24 28 28 C 1.38234 * 119.99752 * 90.00732 * 23 22 21 29 29 H 1.09004 * 109.47332 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46728 * 299.99483 * 1 2 3 31 31 H 1.09002 * 109.47582 * 59.99547 * 1 2 3 32 32 H 1.08999 * 109.47386 * 184.99487 * 4 2 1 33 33 H 1.08997 * 109.47285 * 305.00122 * 4 2 1 34 34 H 0.96996 * 119.99924 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46569 * 174.99601 * 13 2 1 36 36 H 1.09000 * 109.46976 * 54.99656 * 13 2 1 37 37 H 1.00908 * 111.00240 * 56.04623 * 14 13 2 38 38 H 1.09000 * 109.47443 * 59.99850 * 15 14 13 39 39 H 1.09000 * 109.47226 * 299.99840 * 15 14 13 40 40 H 1.08999 * 110.70056 * 260.06972 * 18 16 15 41 41 H 1.08997 * 110.70059 * 23.30239 * 18 16 15 42 42 H 1.08993 * 110.98888 * 82.43753 * 19 18 16 43 43 H 1.08999 * 110.98777 * 206.22262 * 19 18 16 44 44 H 1.08996 * 110.38008 * 278.24314 * 20 19 18 45 45 H 1.09008 * 110.37238 * 155.89785 * 20 19 18 46 46 H 1.08995 * 109.47140 * 56.77291 * 22 21 16 47 47 H 1.08998 * 109.47462 * 296.76752 * 22 21 16 48 48 H 1.08005 * 119.99928 * 0.02562 * 24 23 22 49 49 H 1.08005 * 120.00778 * 180.27907 * 25 24 23 50 50 H 1.07996 * 120.00465 * 179.83769 * 26 25 24 51 51 H 1.08005 * 119.99916 * 180.02562 * 27 26 25 52 52 H 1.07997 * 120.00473 * 359.97146 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0799 0.9743 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 1.6438 0.2769 -4.7995 9 14 2.9624 -1.9887 -3.9030 10 1 2.0232 -3.1331 -4.0192 11 1 3.8105 -1.9190 -5.1200 12 1 3.8249 -2.1755 -2.7086 13 6 2.0400 -0.7213 1.2492 14 7 1.6515 0.0373 2.4455 15 6 2.1259 -0.6267 3.6670 16 6 1.7026 0.1906 4.8892 17 1 0.6279 0.3707 4.8607 18 6 2.0777 -0.5646 6.1816 19 6 2.5448 0.5725 7.1280 20 6 3.2455 1.5358 6.1375 21 7 2.4259 1.4754 4.9085 22 6 3.2622 1.6266 3.7102 23 6 3.9225 2.9812 3.7263 24 6 3.2956 4.0628 3.1363 25 6 3.8993 5.3062 3.1549 26 6 5.1341 5.4661 3.7554 27 6 5.7634 4.3834 4.3407 28 6 5.1577 3.1409 4.3259 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 3.1262 -0.7994 -1.2058 33 1 1.6053 -1.7198 -1.2952 34 1 1.8910 -0.0459 -5.6801 35 1 3.1263 -0.7996 1.2054 36 1 1.6053 -1.7199 1.2951 37 1 0.6529 0.1792 2.4753 38 1 3.2128 -0.7040 3.6399 39 1 1.6922 -1.6247 3.7299 40 1 1.2088 -1.0770 6.5944 41 1 2.8889 -1.2683 5.9950 42 1 1.6936 1.0562 7.6069 43 1 3.2477 0.1974 7.8718 44 1 4.2612 1.1973 5.9333 45 1 3.2556 2.5498 6.5374 46 1 2.6405 1.5361 2.8195 47 1 4.0267 0.8498 3.7002 48 1 2.3324 3.9372 2.6642 49 1 3.4075 6.1522 2.6979 50 1 5.6070 6.4370 3.7676 51 1 6.7280 4.5084 4.8103 52 1 5.6494 2.2951 4.7833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548653.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:55 Heat of formation + Delta-G solvation = 27.993633 kcal Electronic energy + Delta-G solvation = -27001.691403 eV Core-core repulsion = 23579.537335 eV Total energy + Delta-G solvation = -3422.154068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.16309 -38.65639 -36.88133 -34.08468 -33.18541 -32.08663 -30.81989 -30.10640 -29.58490 -27.43329 -25.76627 -25.39872 -23.82042 -22.55582 -21.90163 -21.54737 -21.01117 -19.73846 -18.86631 -17.01227 -16.82784 -16.40871 -15.97063 -15.60940 -15.02402 -14.78509 -14.71087 -14.11093 -13.84978 -13.74717 -13.51266 -13.31684 -13.13018 -12.88191 -12.77158 -12.47038 -12.37168 -12.24928 -12.04730 -11.75203 -11.56204 -11.37598 -11.23885 -11.14028 -11.04303 -10.93433 -10.79624 -10.73371 -10.66716 -10.42470 -9.82280 -9.73198 -9.43450 -9.05664 -8.82935 -8.70993 -8.51099 -8.19595 -8.06915 -6.01303 -3.98156 1.43053 1.49918 3.31154 3.39027 3.42295 3.73932 4.07852 4.30927 4.46694 4.47194 4.54934 4.80297 4.93233 4.97620 5.01086 5.08589 5.19013 5.20831 5.32185 5.32563 5.34949 5.47110 5.51219 5.57874 5.60601 5.63325 5.65332 5.71382 5.75767 5.79947 5.93127 5.95443 6.01399 6.11557 6.13187 6.17419 6.34293 6.42299 6.48370 6.54605 6.58915 6.72847 6.79659 6.95186 7.02786 7.06731 7.09467 7.14888 7.23210 7.31654 7.44902 7.52977 7.83199 8.57902 9.04554 9.61654 11.12163 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.003385 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.375134 B = 8269.247805 C = 9835.126181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 H 0.072 0.928 4 C -0.008 4.008 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.877 3.123 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.058 3.942 14 N -0.677 5.677 15 C 0.036 3.964 16 C 0.076 3.924 17 H 0.085 0.915 18 C -0.138 4.138 19 C -0.130 4.130 20 C 0.040 3.960 21 N -0.508 5.508 22 C 0.058 3.942 23 C -0.068 4.068 24 C -0.094 4.094 25 C -0.122 4.122 26 C -0.128 4.128 27 C -0.126 4.126 28 C -0.121 4.121 29 H 0.039 0.961 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.014 0.986 33 H 0.008 0.992 34 H 0.262 0.738 35 H 0.066 0.934 36 H 0.025 0.975 37 H 0.343 0.657 38 H 0.074 0.926 39 H 0.035 0.965 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.075 0.925 46 H 0.154 0.846 47 H 0.032 0.968 48 H 0.125 0.875 49 H 0.119 0.881 50 H 0.116 0.884 51 H 0.115 0.885 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.750 2.716 24.897 25.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.093 4.093 3 H 0.090 0.910 4 C -0.046 4.046 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.705 3.295 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.071 4.071 14 N -0.309 5.309 15 C -0.094 4.094 16 C -0.032 4.032 17 H 0.103 0.897 18 C -0.177 4.177 19 C -0.168 4.168 20 C -0.088 4.088 21 N -0.231 5.231 22 C -0.069 4.069 23 C -0.069 4.069 24 C -0.113 4.113 25 C -0.140 4.140 26 C -0.147 4.147 27 C -0.144 4.144 28 C -0.140 4.140 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.032 0.968 33 H 0.027 0.973 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.162 0.838 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.170 0.830 47 H 0.050 0.950 48 H 0.143 0.857 49 H 0.137 0.863 50 H 0.134 0.866 51 H 0.133 0.867 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.930 3.522 24.642 25.201 hybrid contribution 0.687 -2.273 -0.193 2.382 sum 4.617 1.249 24.449 24.912 Atomic orbital electron populations 1.21751 0.96167 1.00481 1.00904 1.21027 0.95239 1.00165 0.92917 0.90963 1.19596 0.95889 0.95653 0.93469 1.21128 1.35270 1.09558 0.89059 0.90791 1.25026 0.95653 0.96903 0.95986 1.69913 1.47193 1.39301 0.97998 0.86817 0.80657 0.84372 0.77632 1.20470 1.21479 1.19130 1.22216 1.00327 0.94684 0.89849 1.60752 1.19970 1.48696 1.01466 1.22478 1.01061 0.95563 0.90302 1.22475 0.99597 0.88130 0.93013 0.89684 1.22821 1.01456 0.97880 0.95512 1.22691 1.00526 0.96137 0.97413 1.23114 0.95324 0.99705 0.90654 1.63730 1.26597 1.31268 1.01554 1.22226 0.96530 0.90910 0.97249 1.20005 0.94078 0.96086 0.96695 1.21109 0.99794 0.92033 0.98360 1.21179 0.95646 0.97555 0.99641 1.21078 0.95822 0.98545 0.99220 1.21047 0.99715 0.93166 1.00479 1.21078 0.95745 0.97077 1.00099 0.94150 0.94603 0.91332 0.96752 0.97329 0.92839 0.91548 0.95646 0.83762 0.90724 0.94728 0.90859 0.91460 0.90788 0.91217 0.93970 0.90641 0.82970 0.94973 0.85666 0.86295 0.86630 0.86717 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.77 37.16 0.33 -2.06 16 2 C -0.07 -1.40 2.55 -90.62 -0.23 -1.63 16 3 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 4 C -0.01 -0.19 3.52 -27.88 -0.10 -0.29 16 5 C -0.51 -14.33 8.96 -34.44 -0.31 -14.64 16 6 H 0.07 2.22 7.30 -52.48 -0.38 1.84 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 9 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 13 C 0.06 0.88 5.14 -3.83 -0.02 0.86 16 14 N -0.68 -8.52 3.43 -113.78 -0.39 -8.91 16 15 C 0.04 0.39 4.28 -3.82 -0.02 0.37 16 16 C 0.08 0.76 3.62 -66.72 -0.24 0.52 16 17 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 18 C -0.14 -1.13 6.47 -24.91 -0.16 -1.29 16 19 C -0.13 -1.05 7.08 -24.59 -0.17 -1.22 16 20 C 0.04 0.39 5.45 -2.30 -0.01 0.38 16 21 N -0.51 -5.66 5.21 -224.77 -1.17 -6.83 16 22 C 0.06 0.71 3.79 -4.97 -0.02 0.69 16 23 C -0.07 -0.87 4.96 -104.62 -0.52 -1.38 16 24 C -0.09 -1.22 9.70 -39.59 -0.38 -1.60 16 25 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 26 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 27 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 28 C -0.12 -1.42 8.68 -39.58 -0.34 -1.76 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.52 6.68 -51.93 -0.35 0.18 16 31 H 0.07 1.38 6.95 -51.93 -0.36 1.02 16 32 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 33 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.34 4.18 6.98 -39.29 -0.27 3.91 16 38 H 0.07 0.86 6.34 -51.93 -0.33 0.53 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.55 7.85 -51.93 -0.41 0.14 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.04 0.42 6.57 -51.93 -0.34 0.08 16 45 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 46 H 0.15 2.12 4.94 -51.93 -0.26 1.86 16 47 H 0.03 0.41 6.37 -51.93 -0.33 0.08 16 48 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 49 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 50 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 51 H 0.11 1.00 8.06 -52.48 -0.42 0.58 16 52 H 0.11 1.16 7.20 -52.49 -0.38 0.79 16 LS Contribution 393.31 15.07 5.93 5.93 Total: -1.00 -29.84 393.31 -12.28 -42.13 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -9.26 Total: 4.36 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: -3.49 Total: -26.67 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -0.79 Total: -42.88 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.84 -12.28 -42.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548653.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.121 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds