Wall clock time and date at job start Tue Mar 31 2020 11:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47332 * 2 1 4 4 C 1.53003 * 109.46917 * 240.00115 * 2 1 3 5 5 C 1.50700 * 109.46956 * 65.00113 * 4 2 1 6 6 H 1.08006 * 119.99951 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00189 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00098 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99722 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46960 * 90.00373 * 9 7 5 11 11 H 1.48499 * 109.47285 * 210.00001 * 9 7 5 12 12 H 1.48503 * 109.47288 * 330.00453 * 9 7 5 13 13 C 1.53003 * 109.47251 * 120.00395 * 2 1 3 14 14 N 1.46891 * 109.46890 * 294.99666 * 13 2 1 15 15 C 1.46900 * 110.99908 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47410 * 180.02562 * 15 14 13 17 17 H 1.09002 * 109.88432 * 53.43203 * 16 15 14 18 18 C 1.54319 * 109.89354 * 174.63765 * 16 15 14 19 19 C 1.55141 * 103.02289 * 141.68775 * 18 16 15 20 20 C 1.54908 * 101.64966 * 324.34334 * 19 18 16 21 21 N 1.47449 * 109.88881 * 292.40409 * 16 15 14 22 22 C 1.46907 * 110.99381 * 3.84968 * 21 16 15 23 23 C 1.50703 * 109.46523 * 176.76627 * 22 21 16 24 24 C 1.38230 * 120.00436 * 269.72401 * 23 22 21 25 25 C 1.38231 * 120.00493 * 179.79193 * 24 23 22 26 26 C 1.38240 * 119.99894 * 0.44397 * 25 24 23 27 27 C 1.38235 * 119.99512 * 359.81258 * 26 25 24 28 28 C 1.38234 * 119.99752 * 90.00732 * 23 22 21 29 29 H 1.09004 * 109.47332 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46728 * 299.99483 * 1 2 3 31 31 H 1.09002 * 109.47582 * 59.99547 * 1 2 3 32 32 H 1.08999 * 109.47386 * 184.99487 * 4 2 1 33 33 H 1.08997 * 109.47285 * 305.00122 * 4 2 1 34 34 H 0.96996 * 119.99924 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46569 * 174.99601 * 13 2 1 36 36 H 1.09000 * 109.46976 * 54.99656 * 13 2 1 37 37 H 1.00908 * 111.00240 * 56.04623 * 14 13 2 38 38 H 1.09000 * 109.47443 * 59.99850 * 15 14 13 39 39 H 1.09000 * 109.47226 * 299.99840 * 15 14 13 40 40 H 1.08999 * 110.70056 * 260.06972 * 18 16 15 41 41 H 1.08997 * 110.70059 * 23.30239 * 18 16 15 42 42 H 1.08993 * 110.98888 * 82.43753 * 19 18 16 43 43 H 1.08999 * 110.98777 * 206.22262 * 19 18 16 44 44 H 1.08996 * 110.38008 * 278.24314 * 20 19 18 45 45 H 1.09008 * 110.37238 * 155.89785 * 20 19 18 46 46 H 1.08995 * 109.47140 * 56.77291 * 22 21 16 47 47 H 1.08998 * 109.47462 * 296.76752 * 22 21 16 48 48 H 1.08005 * 119.99928 * 0.02562 * 24 23 22 49 49 H 1.08005 * 120.00778 * 180.27907 * 25 24 23 50 50 H 1.07996 * 120.00465 * 179.83769 * 26 25 24 51 51 H 1.08005 * 119.99916 * 180.02562 * 27 26 25 52 52 H 1.07997 * 120.00473 * 359.97146 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0799 0.9743 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 1.6438 0.2769 -4.7995 9 14 2.9624 -1.9887 -3.9030 10 1 2.0232 -3.1331 -4.0192 11 1 3.8105 -1.9190 -5.1200 12 1 3.8249 -2.1755 -2.7086 13 6 2.0400 -0.7213 1.2492 14 7 1.6515 0.0373 2.4455 15 6 2.1259 -0.6267 3.6670 16 6 1.7026 0.1906 4.8892 17 1 0.6279 0.3707 4.8607 18 6 2.0777 -0.5646 6.1816 19 6 2.5448 0.5725 7.1280 20 6 3.2455 1.5358 6.1375 21 7 2.4259 1.4754 4.9085 22 6 3.2622 1.6266 3.7102 23 6 3.9225 2.9812 3.7263 24 6 3.2956 4.0628 3.1363 25 6 3.8993 5.3062 3.1549 26 6 5.1341 5.4661 3.7554 27 6 5.7634 4.3834 4.3407 28 6 5.1577 3.1409 4.3259 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 3.1262 -0.7994 -1.2058 33 1 1.6053 -1.7198 -1.2952 34 1 1.8910 -0.0459 -5.6801 35 1 3.1263 -0.7996 1.2054 36 1 1.6053 -1.7199 1.2951 37 1 0.6529 0.1792 2.4753 38 1 3.2128 -0.7040 3.6399 39 1 1.6922 -1.6247 3.7299 40 1 1.2088 -1.0770 6.5944 41 1 2.8889 -1.2683 5.9950 42 1 1.6936 1.0562 7.6069 43 1 3.2477 0.1974 7.8718 44 1 4.2612 1.1973 5.9333 45 1 3.2556 2.5498 6.5374 46 1 2.6405 1.5361 2.8195 47 1 4.0267 0.8498 3.7002 48 1 2.3324 3.9372 2.6642 49 1 3.4075 6.1522 2.6979 50 1 5.6070 6.4370 3.7676 51 1 6.7280 4.5084 4.8103 52 1 5.6494 2.2951 4.7833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602548653.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:53 Heat of formation + Delta-G solvation = 11.684328 kcal Electronic energy + Delta-G solvation = -27002.398628 eV Core-core repulsion = 23579.537335 eV Total energy + Delta-G solvation = -3422.861293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.01512 -39.53063 -38.19149 -35.56399 -34.08812 -33.94504 -31.71190 -31.05302 -30.57288 -29.17083 -27.01053 -26.28757 -25.06609 -23.62653 -23.26230 -22.42582 -21.78488 -20.89271 -20.16341 -18.93350 -17.83279 -17.36160 -16.87232 -16.52908 -16.44910 -15.91023 -15.67501 -15.61452 -15.06363 -14.96697 -14.70835 -14.36008 -14.20154 -14.02237 -13.94333 -13.66371 -13.44543 -13.35969 -13.23872 -13.07848 -12.81879 -12.67807 -12.37567 -12.24197 -12.10263 -12.05745 -11.92098 -11.74491 -11.69786 -11.59954 -11.53013 -11.41971 -11.12697 -10.99468 -10.73245 -9.73227 -9.60649 -9.08629 -9.03502 -8.25508 -6.27489 0.53444 0.59180 1.34810 1.37155 1.48546 2.37594 2.86568 3.09821 3.15037 3.39923 3.74466 3.82101 4.00131 4.05769 4.11275 4.18779 4.21915 4.25516 4.30020 4.36263 4.40329 4.43421 4.53714 4.61913 4.66392 4.70133 4.74782 4.79025 4.84763 4.87228 4.96951 5.00640 5.02680 5.05822 5.09575 5.15164 5.21483 5.27511 5.31891 5.39379 5.42003 5.52936 5.57185 5.64178 5.69510 5.71098 5.74692 5.88284 6.03097 6.20091 6.26780 6.31682 6.36242 6.49739 6.80354 7.35920 8.91367 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.003385 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.375134 B = 8269.247805 C = 9835.126181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.069 4.069 3 H 0.052 0.948 4 C -0.006 4.006 5 C -0.517 4.517 6 H 0.034 0.966 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.947 3.053 10 H -0.267 1.267 11 H -0.287 1.287 12 H -0.248 1.248 13 C 0.074 3.926 14 N -0.678 5.678 15 C 0.043 3.957 16 C 0.077 3.923 17 H 0.084 0.916 18 C -0.132 4.132 19 C -0.123 4.123 20 C 0.040 3.960 21 N -0.518 5.518 22 C 0.068 3.932 23 C -0.082 4.082 24 C -0.117 4.117 25 C -0.132 4.132 26 C -0.133 4.133 27 C -0.129 4.129 28 C -0.129 4.129 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.032 0.968 32 H 0.014 0.986 33 H 0.016 0.984 34 H 0.264 0.736 35 H 0.062 0.938 36 H 0.034 0.966 37 H 0.346 0.654 38 H 0.068 0.932 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.041 0.959 45 H 0.066 0.934 46 H 0.137 0.863 47 H 0.026 0.974 48 H 0.116 0.884 49 H 0.131 0.869 50 H 0.139 0.861 51 H 0.139 0.861 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.809 1.125 27.508 27.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.044 4.044 5 C -0.555 4.555 6 H 0.053 0.947 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.771 3.229 10 H -0.192 1.192 11 H -0.213 1.213 12 H -0.172 1.172 13 C -0.055 4.055 14 N -0.310 5.310 15 C -0.087 4.087 16 C -0.032 4.032 17 H 0.102 0.898 18 C -0.171 4.171 19 C -0.161 4.161 20 C -0.087 4.087 21 N -0.242 5.242 22 C -0.059 4.059 23 C -0.083 4.083 24 C -0.136 4.136 25 C -0.150 4.150 26 C -0.152 4.152 27 C -0.146 4.146 28 C -0.148 4.148 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.166 0.834 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.059 0.941 45 H 0.084 0.916 46 H 0.154 0.846 47 H 0.044 0.956 48 H 0.134 0.866 49 H 0.149 0.851 50 H 0.157 0.843 51 H 0.157 0.843 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.981 1.931 27.285 27.803 hybrid contribution 0.317 -1.638 -0.984 1.937 sum 5.298 0.293 26.301 26.831 Atomic orbital electron populations 1.21652 0.95277 1.00927 1.00682 1.20867 0.95956 0.98951 0.93041 0.92959 1.19553 0.95827 0.95626 0.93378 1.21459 1.34176 1.08621 0.91224 0.94726 1.25995 0.97032 1.00925 0.95578 1.70074 1.49155 1.41642 0.98693 0.85706 0.79374 0.79653 0.78185 1.19246 1.21285 1.17169 1.21890 0.99898 0.94601 0.89113 1.60695 1.20279 1.48651 1.01339 1.22450 1.00664 0.96051 0.89547 1.22503 0.99329 0.87751 0.93575 0.89786 1.22798 1.02166 0.97749 0.94344 1.22675 1.00716 0.95536 0.97216 1.23090 0.95369 0.99741 0.90538 1.63692 1.26745 1.32204 1.01567 1.22008 0.96056 0.90661 0.97206 1.20139 0.94766 0.96162 0.97222 1.21191 0.99978 0.92995 0.99409 1.21417 0.96265 0.97525 0.99833 1.21404 0.95458 0.99752 0.98539 1.21389 1.00564 0.92743 0.99948 1.21251 0.95449 0.97968 1.00092 0.93261 0.91492 0.94893 0.96815 0.96569 0.92730 0.91963 0.94737 0.83350 0.91327 0.93589 0.89422 0.91106 0.90651 0.89654 0.94066 0.91608 0.84615 0.95609 0.86593 0.85063 0.84299 0.84314 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 8.77 71.98 0.63 -3.85 16 2 C -0.07 -2.60 2.55 -10.79 -0.03 -2.63 16 3 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 4 C -0.01 -0.28 3.52 29.85 0.10 -0.17 16 5 C -0.52 -29.79 8.96 25.60 0.23 -29.56 16 6 H 0.03 2.20 7.30 -2.91 -0.02 2.18 16 7 C 0.00 0.04 5.47 84.66 0.46 0.50 16 8 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 9 Si 0.95 44.83 27.47 68.60 1.88 46.72 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 13 C 0.07 2.15 5.14 86.31 0.44 2.59 16 14 N -0.68 -16.16 3.43 -513.90 -1.76 -17.93 16 15 C 0.04 0.84 4.28 86.30 0.37 1.20 16 16 C 0.08 1.38 3.62 45.26 0.16 1.55 16 17 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 18 C -0.13 -1.80 6.47 31.78 0.21 -1.60 16 19 C -0.12 -1.70 7.08 31.98 0.23 -1.47 16 20 C 0.04 0.74 5.45 86.77 0.47 1.21 16 21 N -0.52 -11.07 5.21 -865.03 -4.50 -15.58 16 22 C 0.07 1.66 3.79 85.56 0.32 1.99 16 23 C -0.08 -2.10 4.96 -19.87 -0.10 -2.20 16 24 C -0.12 -3.10 9.70 22.27 0.22 -2.88 16 25 C -0.13 -3.08 10.05 22.27 0.22 -2.86 16 26 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 27 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 28 C -0.13 -2.91 8.68 22.27 0.19 -2.71 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 1.90 6.68 -2.39 -0.02 1.88 16 31 H 0.03 1.36 6.95 -2.39 -0.02 1.35 16 32 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 33 H 0.02 0.72 7.57 -2.39 -0.02 0.71 16 34 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.35 7.86 6.98 -89.69 -0.63 7.23 16 38 H 0.07 1.46 6.34 -2.39 -0.02 1.45 16 39 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 0.94 7.85 -2.39 -0.02 0.93 16 42 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.04 0.76 6.57 -2.39 -0.02 0.75 16 45 H 0.07 1.32 8.14 -2.38 -0.02 1.31 16 46 H 0.14 3.80 4.94 -2.39 -0.01 3.79 16 47 H 0.03 0.65 6.37 -2.39 -0.02 0.63 16 48 H 0.12 3.14 8.06 -2.91 -0.02 3.12 16 49 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 50 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 51 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 52 H 0.12 2.40 7.20 -2.91 -0.02 2.38 16 Total: -1.00 -66.36 393.31 0.70 -65.66 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.19 Total: 27.32 kcal Atomic # 6 Polarization: -50.36 SS G_CDS: 4.59 Total: -45.78 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -5.97 Total: -93.93 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.72 kcal Total: -66.36 0.70 -65.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548653.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.343 kcal (2) G-P(sol) polarization free energy of solvation -66.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds