Wall clock time and date at job start Tue Mar 31 2020 11:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 109.46771 * 2 1 4 4 C 1.52998 * 109.47378 * 119.99999 * 2 1 3 5 5 C 1.50700 * 109.47116 * 295.00122 * 4 2 1 6 6 H 1.08000 * 119.99801 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00053 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99728 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00063 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47078 * 180.02562 * 9 7 5 11 11 H 1.48502 * 109.46844 * 300.00370 * 9 7 5 12 12 H 1.48497 * 109.47056 * 59.99588 * 9 7 5 13 13 C 1.53001 * 109.46926 * 240.00291 * 2 1 3 14 14 N 1.46899 * 109.47400 * 64.99796 * 13 2 1 15 15 C 1.46894 * 111.00132 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.47203 * 180.02562 * 15 14 13 17 17 H 1.08995 * 109.88155 * 56.13228 * 16 15 14 18 18 C 1.54319 * 109.88863 * 295.09776 * 16 15 14 19 19 C 1.55395 * 102.90028 * 218.40533 * 18 16 15 20 20 C 1.54909 * 101.74186 * 35.48263 * 19 18 16 21 21 N 1.47447 * 109.88780 * 177.16442 * 16 15 14 22 22 C 1.46897 * 111.00190 * 356.14897 * 21 16 15 23 23 C 1.50705 * 109.47308 * 185.25906 * 22 21 16 24 24 C 1.38231 * 119.99500 * 269.72338 * 23 22 21 25 25 C 1.38240 * 119.99760 * 179.76234 * 24 23 22 26 26 C 1.38235 * 119.99714 * 0.51372 * 25 24 23 27 27 C 1.38235 * 120.00189 * 359.74081 * 26 25 24 28 28 C 1.38233 * 119.99965 * 0.02562 * 27 26 25 29 29 H 1.08995 * 109.46757 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47033 * 299.99987 * 1 2 3 31 31 H 1.09002 * 109.46914 * 59.99540 * 1 2 3 32 32 H 1.08991 * 109.47354 * 174.99596 * 4 2 1 33 33 H 1.09003 * 109.47023 * 54.99799 * 4 2 1 34 34 H 0.97001 * 119.99845 * 179.97438 * 8 7 5 35 35 H 1.08993 * 109.47043 * 185.00094 * 13 2 1 36 36 H 1.08998 * 109.47057 * 304.99725 * 13 2 1 37 37 H 1.00900 * 110.99924 * 303.95415 * 14 13 2 38 38 H 1.08998 * 109.47355 * 300.00244 * 15 14 13 39 39 H 1.09003 * 109.47053 * 59.99982 * 15 14 13 40 40 H 1.08995 * 110.70665 * 336.69851 * 18 16 15 41 41 H 1.08997 * 110.70120 * 99.93054 * 18 16 15 42 42 H 1.09000 * 110.87612 * 277.39535 * 19 18 16 43 43 H 1.08999 * 111.02225 * 153.63703 * 19 18 16 44 44 H 1.08994 * 110.37556 * 204.18488 * 20 19 18 45 45 H 1.09001 * 110.37139 * 81.84506 * 20 19 18 46 46 H 1.09006 * 109.46920 * 305.25783 * 22 21 16 47 47 H 1.08998 * 109.47613 * 65.25304 * 22 21 16 48 48 H 1.07997 * 120.00276 * 359.97438 * 24 23 22 49 49 H 1.07998 * 119.99957 * 180.23234 * 25 24 23 50 50 H 1.07999 * 120.00338 * 179.71943 * 26 25 24 51 51 H 1.07997 * 120.00411 * 179.97438 * 27 26 25 52 52 H 1.08003 * 120.00067 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6415 0.0570 2.4766 6 1 1.0801 0.9741 2.3757 7 6 1.9925 -0.4022 3.7283 8 7 2.6757 -1.5192 3.8511 9 14 1.4990 0.5629 5.2496 10 1 1.9939 -0.1372 6.4621 11 1 2.0921 1.9229 5.1870 12 1 0.0191 0.6706 5.3090 13 6 2.0400 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4457 15 6 2.1247 -0.6270 -3.6672 16 6 1.7024 0.1910 -4.8892 17 1 2.0766 1.2108 -4.7999 18 6 0.1636 0.2048 -5.0055 19 6 -0.0694 0.1029 -6.5385 20 6 1.0919 -0.8258 -6.9728 21 7 2.2310 -0.4316 -6.1168 22 6 3.0755 -1.5904 -5.7977 23 6 3.6998 -2.1206 -7.0627 24 6 3.0508 -3.0949 -7.7979 25 6 3.6211 -3.5778 -8.9609 26 6 4.8453 -3.0939 -9.3830 27 6 5.4967 -2.1234 -8.6450 28 6 4.9242 -1.6371 -7.4846 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.1264 -0.7995 1.2055 33 1 1.6055 -1.7198 1.2951 34 1 2.9230 -1.8422 4.7317 35 1 3.1263 -0.7994 -1.2057 36 1 1.6054 -1.7197 -1.2952 37 1 0.6528 0.1793 -2.4753 38 1 3.2115 -0.7051 -3.6406 39 1 1.6903 -1.6248 -3.7297 40 1 -0.2693 -0.6538 -4.4924 41 1 -0.2442 1.1360 -4.6123 42 1 0.0162 1.0818 -7.0103 43 1 -1.0356 -0.3514 -6.7578 44 1 1.3334 -0.6654 -8.0235 45 1 0.8290 -1.8691 -6.7980 46 1 3.8603 -1.2881 -5.1043 47 1 2.4659 -2.3691 -5.3393 48 1 2.0967 -3.4764 -7.4656 49 1 3.1124 -4.3363 -9.5373 50 1 5.2931 -3.4744 -10.2892 51 1 6.4533 -1.7457 -8.9745 52 1 5.4333 -0.8792 -6.9077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548654.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:58 Heat of formation + Delta-G solvation = 15.596333 kcal Electronic energy + Delta-G solvation = -26122.109976 eV Core-core repulsion = 22699.418320 eV Total energy + Delta-G solvation = -3422.691656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.29016 -38.89440 -36.74973 -33.98437 -33.48982 -32.06768 -31.12891 -30.47038 -29.34756 -26.88081 -25.76761 -25.62371 -24.02889 -22.87051 -22.27648 -21.73604 -21.07388 -19.62965 -18.84294 -17.06335 -16.56489 -16.48914 -16.02713 -15.60735 -15.38270 -15.13726 -14.66646 -14.36663 -13.93184 -13.76620 -13.53621 -13.46558 -13.27063 -13.07709 -12.89777 -12.55623 -12.41787 -12.24042 -11.99439 -11.71059 -11.60275 -11.35988 -11.33180 -11.16624 -11.06412 -10.89407 -10.86844 -10.75653 -10.68963 -10.32702 -10.21388 -9.72028 -9.17232 -9.13438 -9.02563 -8.97350 -8.47035 -8.32290 -8.14339 -5.97041 -3.98281 1.10706 1.18888 3.34836 3.39195 3.41684 3.45159 3.88252 4.34888 4.38976 4.48726 4.55508 4.57413 4.62962 4.76072 4.86944 4.87352 5.03755 5.05515 5.22053 5.24202 5.28068 5.38533 5.39392 5.43375 5.43779 5.58170 5.68808 5.70648 5.74220 5.77258 5.80778 5.82417 5.86391 5.94543 6.04231 6.17324 6.22393 6.25129 6.28459 6.40582 6.45530 6.54532 6.74427 6.80725 6.81913 6.95012 7.09727 7.16795 7.34914 7.62501 7.70119 7.86023 8.02995 8.46757 9.07805 9.64975 11.14439 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020353 B = 0.002178 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.414971 B =12854.912012 C =13798.332272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.066 0.934 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.278 1.278 13 C 0.065 3.935 14 N -0.686 5.686 15 C 0.041 3.959 16 C 0.074 3.926 17 H 0.098 0.902 18 C -0.139 4.139 19 C -0.130 4.130 20 C 0.043 3.957 21 N -0.515 5.515 22 C 0.080 3.920 23 C -0.074 4.074 24 C -0.115 4.115 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.122 4.122 28 C -0.098 4.098 29 H 0.040 0.960 30 H 0.063 0.937 31 H 0.031 0.969 32 H 0.015 0.985 33 H 0.013 0.987 34 H 0.260 0.740 35 H 0.067 0.933 36 H 0.022 0.978 37 H 0.337 0.663 38 H 0.078 0.922 39 H 0.025 0.975 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.044 0.956 46 H 0.091 0.909 47 H 0.047 0.953 48 H 0.116 0.884 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.121 0.879 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 -1.756 -27.967 28.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.214 1.214 11 H -0.202 1.202 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.318 5.318 15 C -0.089 4.089 16 C -0.034 4.034 17 H 0.116 0.884 18 C -0.178 4.178 19 C -0.168 4.168 20 C -0.085 4.085 21 N -0.239 5.239 22 C -0.047 4.047 23 C -0.075 4.075 24 C -0.133 4.133 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.140 4.140 28 C -0.117 4.117 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.033 0.967 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.156 0.844 38 H 0.096 0.904 39 H 0.043 0.957 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.062 0.938 46 H 0.109 0.891 47 H 0.065 0.935 48 H 0.134 0.866 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.139 0.861 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.157 -1.096 -28.048 28.070 hybrid contribution -1.300 -1.034 1.296 2.107 sum -1.143 -2.130 -26.752 26.861 Atomic orbital electron populations 1.21742 0.96736 1.00369 1.00269 1.21224 0.94818 1.00139 0.94113 0.91565 1.19102 0.96136 0.95325 0.90361 1.21198 1.34709 1.08273 0.90978 0.92604 1.25027 0.95349 0.95105 0.99113 1.69955 1.39010 1.21226 1.23481 0.86680 0.78830 0.80160 0.82458 1.21391 1.20249 1.20328 1.22138 1.00355 0.94327 0.89534 1.60554 1.19606 1.50427 1.01260 1.22594 1.01032 0.94925 0.90348 1.22499 0.93552 0.99778 0.87523 0.88409 1.22918 0.95898 1.02680 0.96284 1.22742 0.97969 1.00374 0.95692 1.23081 0.89719 0.97406 0.98255 1.63860 1.18704 1.26356 1.14933 1.21356 0.97273 0.92080 0.93990 1.19807 0.94966 0.96104 0.96593 1.21068 0.99620 0.97300 0.95328 1.21098 0.95995 1.00202 0.96739 1.21135 0.95561 0.97640 0.99883 1.21163 0.99988 0.97404 0.95404 1.21063 0.95120 0.99085 0.96435 0.94107 0.91810 0.95017 0.96661 0.96824 0.93045 0.91471 0.96009 0.84374 0.90388 0.95705 0.91687 0.90172 0.90615 0.91000 0.90382 0.93755 0.89104 0.93495 0.86560 0.86303 0.86342 0.86145 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.78 37.16 0.33 -2.16 16 2 C -0.08 -1.72 2.55 -90.62 -0.23 -1.95 16 3 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.40 8.41 -34.44 -0.29 -14.69 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.07 1.13 5.14 -3.82 -0.02 1.11 16 14 N -0.69 -9.90 6.50 -113.79 -0.74 -10.64 16 15 C 0.04 0.50 3.82 -3.83 -0.01 0.49 16 16 C 0.07 0.80 3.68 -66.72 -0.25 0.55 16 17 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 18 C -0.14 -1.32 5.56 -24.77 -0.14 -1.45 16 19 C -0.13 -1.07 7.08 -24.45 -0.17 -1.25 16 20 C 0.04 0.39 5.50 -2.30 -0.01 0.38 16 21 N -0.51 -5.26 5.19 -224.78 -1.17 -6.43 16 22 C 0.08 0.80 3.84 -4.98 -0.02 0.78 16 23 C -0.07 -0.73 5.00 -104.62 -0.52 -1.25 16 24 C -0.11 -1.03 8.75 -39.58 -0.35 -1.38 16 25 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 26 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 27 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 28 C -0.10 -0.93 9.70 -39.58 -0.38 -1.32 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 31 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.34 4.60 6.08 -39.29 -0.24 4.37 16 38 H 0.08 0.98 6.26 -51.93 -0.33 0.66 16 39 H 0.02 0.31 6.97 -51.93 -0.36 -0.05 16 40 H 0.06 0.64 7.80 -51.93 -0.41 0.24 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.04 0.39 6.71 -51.93 -0.35 0.04 16 46 H 0.09 0.93 6.24 -51.93 -0.32 0.61 16 47 H 0.05 0.48 6.71 -51.93 -0.35 0.13 16 48 H 0.12 0.93 7.29 -52.49 -0.38 0.55 16 49 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 50 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 51 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 52 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 LS Contribution 398.53 15.07 6.01 6.01 Total: -1.00 -29.95 398.53 -12.96 -42.91 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -9.29 Total: 2.00 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -3.48 Total: -24.26 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: -1.17 Total: -43.41 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.95 -12.96 -42.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548654.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.509 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds