Wall clock time and date at job start Tue Mar 31 2020 11:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 109.46771 * 2 1 4 4 C 1.52998 * 109.47378 * 119.99999 * 2 1 3 5 5 C 1.50700 * 109.47116 * 295.00122 * 4 2 1 6 6 H 1.08000 * 119.99801 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00053 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99728 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00063 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47078 * 180.02562 * 9 7 5 11 11 H 1.48502 * 109.46844 * 300.00370 * 9 7 5 12 12 H 1.48497 * 109.47056 * 59.99588 * 9 7 5 13 13 C 1.53001 * 109.46926 * 240.00291 * 2 1 3 14 14 N 1.46899 * 109.47400 * 64.99796 * 13 2 1 15 15 C 1.46894 * 111.00132 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.47203 * 180.02562 * 15 14 13 17 17 H 1.08995 * 109.88155 * 56.13228 * 16 15 14 18 18 C 1.54319 * 109.88863 * 295.09776 * 16 15 14 19 19 C 1.55395 * 102.90028 * 218.40533 * 18 16 15 20 20 C 1.54909 * 101.74186 * 35.48263 * 19 18 16 21 21 N 1.47447 * 109.88780 * 177.16442 * 16 15 14 22 22 C 1.46897 * 111.00190 * 356.14897 * 21 16 15 23 23 C 1.50705 * 109.47308 * 185.25906 * 22 21 16 24 24 C 1.38231 * 119.99500 * 269.72338 * 23 22 21 25 25 C 1.38240 * 119.99760 * 179.76234 * 24 23 22 26 26 C 1.38235 * 119.99714 * 0.51372 * 25 24 23 27 27 C 1.38235 * 120.00189 * 359.74081 * 26 25 24 28 28 C 1.38233 * 119.99965 * 0.02562 * 27 26 25 29 29 H 1.08995 * 109.46757 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47033 * 299.99987 * 1 2 3 31 31 H 1.09002 * 109.46914 * 59.99540 * 1 2 3 32 32 H 1.08991 * 109.47354 * 174.99596 * 4 2 1 33 33 H 1.09003 * 109.47023 * 54.99799 * 4 2 1 34 34 H 0.97001 * 119.99845 * 179.97438 * 8 7 5 35 35 H 1.08993 * 109.47043 * 185.00094 * 13 2 1 36 36 H 1.08998 * 109.47057 * 304.99725 * 13 2 1 37 37 H 1.00900 * 110.99924 * 303.95415 * 14 13 2 38 38 H 1.08998 * 109.47355 * 300.00244 * 15 14 13 39 39 H 1.09003 * 109.47053 * 59.99982 * 15 14 13 40 40 H 1.08995 * 110.70665 * 336.69851 * 18 16 15 41 41 H 1.08997 * 110.70120 * 99.93054 * 18 16 15 42 42 H 1.09000 * 110.87612 * 277.39535 * 19 18 16 43 43 H 1.08999 * 111.02225 * 153.63703 * 19 18 16 44 44 H 1.08994 * 110.37556 * 204.18488 * 20 19 18 45 45 H 1.09001 * 110.37139 * 81.84506 * 20 19 18 46 46 H 1.09006 * 109.46920 * 305.25783 * 22 21 16 47 47 H 1.08998 * 109.47613 * 65.25304 * 22 21 16 48 48 H 1.07997 * 120.00276 * 359.97438 * 24 23 22 49 49 H 1.07998 * 119.99957 * 180.23234 * 25 24 23 50 50 H 1.07999 * 120.00338 * 179.71943 * 26 25 24 51 51 H 1.07997 * 120.00411 * 179.97438 * 27 26 25 52 52 H 1.08003 * 120.00067 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6415 0.0570 2.4766 6 1 1.0801 0.9741 2.3757 7 6 1.9925 -0.4022 3.7283 8 7 2.6757 -1.5192 3.8511 9 14 1.4990 0.5629 5.2496 10 1 1.9939 -0.1372 6.4621 11 1 2.0921 1.9229 5.1870 12 1 0.0191 0.6706 5.3090 13 6 2.0400 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4457 15 6 2.1247 -0.6270 -3.6672 16 6 1.7024 0.1910 -4.8892 17 1 2.0766 1.2108 -4.7999 18 6 0.1636 0.2048 -5.0055 19 6 -0.0694 0.1029 -6.5385 20 6 1.0919 -0.8258 -6.9728 21 7 2.2310 -0.4316 -6.1168 22 6 3.0755 -1.5904 -5.7977 23 6 3.6998 -2.1206 -7.0627 24 6 3.0508 -3.0949 -7.7979 25 6 3.6211 -3.5778 -8.9609 26 6 4.8453 -3.0939 -9.3830 27 6 5.4967 -2.1234 -8.6450 28 6 4.9242 -1.6371 -7.4846 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.1264 -0.7995 1.2055 33 1 1.6055 -1.7198 1.2951 34 1 2.9230 -1.8422 4.7317 35 1 3.1263 -0.7994 -1.2057 36 1 1.6054 -1.7197 -1.2952 37 1 0.6528 0.1793 -2.4753 38 1 3.2115 -0.7051 -3.6406 39 1 1.6903 -1.6248 -3.7297 40 1 -0.2693 -0.6538 -4.4924 41 1 -0.2442 1.1360 -4.6123 42 1 0.0162 1.0818 -7.0103 43 1 -1.0356 -0.3514 -6.7578 44 1 1.3334 -0.6654 -8.0235 45 1 0.8290 -1.8691 -6.7980 46 1 3.8603 -1.2881 -5.1043 47 1 2.4659 -2.3691 -5.3393 48 1 2.0967 -3.4764 -7.4656 49 1 3.1124 -4.3363 -9.5373 50 1 5.2931 -3.4744 -10.2892 51 1 6.4533 -1.7457 -8.9745 52 1 5.4333 -0.8792 -6.9077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602548654.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:57 Heat of formation + Delta-G solvation = -1.168493 kcal Electronic energy + Delta-G solvation = -26122.836953 eV Core-core repulsion = 22699.418320 eV Total energy + Delta-G solvation = -3423.418633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.06839 -39.62248 -38.20016 -35.59494 -34.22856 -33.91367 -31.78012 -31.27401 -30.39628 -28.75510 -27.01483 -26.48185 -25.40698 -23.89530 -23.50422 -22.50657 -21.80801 -20.85354 -20.16633 -18.53999 -17.84149 -17.32652 -16.99317 -16.68984 -16.47602 -16.18979 -15.86631 -15.48868 -15.30256 -14.85806 -14.63673 -14.33122 -14.20017 -14.06834 -14.00142 -13.73895 -13.61412 -13.33835 -13.23342 -13.17803 -12.81284 -12.74755 -12.55619 -12.33894 -12.24475 -12.05026 -11.94713 -11.83685 -11.75568 -11.61524 -11.59745 -11.46859 -11.07836 -10.95040 -10.53219 -9.78760 -9.69695 -9.45719 -9.19001 -8.17454 -6.26723 0.44460 0.53431 1.40189 1.43132 1.50739 2.41997 2.73410 3.05651 3.15807 3.36640 3.58780 3.75196 3.83258 3.95472 4.03930 4.15944 4.17571 4.19872 4.25184 4.28961 4.32493 4.37830 4.43636 4.47121 4.60016 4.63689 4.69034 4.73906 4.77261 4.78950 4.85478 4.94888 5.00649 5.02481 5.07371 5.13762 5.16541 5.20467 5.23376 5.35273 5.38737 5.47611 5.54548 5.58390 5.64944 5.72346 5.78347 5.88245 5.92626 6.04571 6.09442 6.16088 6.30581 6.47809 6.89040 7.41432 8.94413 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020353 B = 0.002178 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.414971 B =12854.912012 C =13798.332272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.075 4.075 3 H 0.058 0.942 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.062 0.938 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.285 1.285 11 H -0.268 1.268 12 H -0.266 1.266 13 C 0.078 3.922 14 N -0.684 5.684 15 C 0.048 3.952 16 C 0.080 3.920 17 H 0.087 0.913 18 C -0.137 4.137 19 C -0.123 4.123 20 C 0.044 3.956 21 N -0.521 5.521 22 C 0.085 3.915 23 C -0.088 4.088 24 C -0.123 4.123 25 C -0.127 4.127 26 C -0.128 4.128 27 C -0.128 4.128 28 C -0.115 4.115 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.067 0.933 32 H -0.015 1.015 33 H -0.011 1.011 34 H 0.262 0.738 35 H 0.055 0.945 36 H 0.021 0.979 37 H 0.345 0.655 38 H 0.071 0.929 39 H 0.026 0.974 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.047 0.953 46 H 0.082 0.918 47 H 0.043 0.957 48 H 0.123 0.877 49 H 0.139 0.861 50 H 0.141 0.859 51 H 0.137 0.863 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 -1.120 -29.437 29.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.094 4.094 3 H 0.076 0.924 4 C -0.005 4.005 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.211 1.211 11 H -0.193 1.193 12 H -0.191 1.191 13 C -0.051 4.051 14 N -0.317 5.317 15 C -0.082 4.082 16 C -0.028 4.028 17 H 0.105 0.895 18 C -0.176 4.176 19 C -0.161 4.161 20 C -0.083 4.083 21 N -0.245 5.245 22 C -0.042 4.042 23 C -0.088 4.088 24 C -0.142 4.142 25 C -0.145 4.145 26 C -0.146 4.146 27 C -0.146 4.146 28 C -0.134 4.134 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.004 0.996 33 H 0.007 0.993 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.165 0.835 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.065 0.935 46 H 0.100 0.900 47 H 0.061 0.939 48 H 0.141 0.859 49 H 0.157 0.843 50 H 0.159 0.841 51 H 0.155 0.845 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.094 -0.448 -29.542 29.566 hybrid contribution -0.857 -1.269 1.677 2.271 sum -1.951 -1.717 -27.865 27.986 Atomic orbital electron populations 1.21651 0.94879 1.00625 1.01210 1.21018 0.96295 0.99027 0.93077 0.92383 1.18998 0.94162 0.94556 0.92753 1.21611 1.34503 1.08590 0.92008 0.91981 1.25978 0.95295 0.96129 1.02732 1.70097 1.40254 1.22969 1.24330 0.85544 0.78960 0.78744 0.78071 1.21095 1.19288 1.19112 1.21826 0.99517 0.94125 0.89629 1.60457 1.20215 1.50070 1.00929 1.22573 1.00592 0.95139 0.89940 1.22383 0.94665 0.98797 0.86968 0.89510 1.22902 0.94552 1.02873 0.97267 1.22731 0.98325 1.00434 0.94616 1.23091 0.89545 0.97778 0.97902 1.63848 1.19289 1.26671 1.14682 1.21266 0.96918 0.91809 0.94203 1.19847 0.95389 0.96856 0.96744 1.21214 1.00017 0.97244 0.95715 1.21400 0.96180 1.00393 0.96525 1.21464 0.95483 0.97179 1.00493 1.21424 1.00717 0.97464 0.95032 1.21200 0.95384 0.99614 0.97205 0.94179 0.93468 0.91414 0.99626 0.99285 0.92959 0.92625 0.96124 0.83505 0.91098 0.95540 0.91820 0.89646 0.90377 0.89473 0.90465 0.93491 0.90011 0.93904 0.85900 0.84308 0.84138 0.84505 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 8.78 71.99 0.63 -3.92 16 2 C -0.08 -3.09 2.55 -10.79 -0.03 -3.12 16 3 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 4 C 0.03 1.75 4.45 29.85 0.13 1.88 16 5 C -0.53 -30.10 8.41 25.60 0.22 -29.88 16 6 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 7 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 8 N -0.94 -57.70 13.29 21.45 0.28 -57.41 16 9 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 10 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 13 C 0.08 2.73 5.14 86.30 0.44 3.17 16 14 N -0.68 -19.11 6.50 -513.91 -3.34 -22.45 16 15 C 0.05 1.13 3.82 86.30 0.33 1.46 16 16 C 0.08 1.64 3.68 45.26 0.17 1.81 16 17 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 18 C -0.14 -2.34 5.56 31.87 0.18 -2.16 16 19 C -0.12 -1.78 7.08 32.07 0.23 -1.55 16 20 C 0.04 0.74 5.50 86.77 0.48 1.21 16 21 N -0.52 -10.32 5.19 -865.07 -4.49 -14.81 16 22 C 0.09 1.71 3.84 85.56 0.33 2.04 16 23 C -0.09 -1.70 5.00 -19.87 -0.10 -1.79 16 24 C -0.12 -2.11 8.75 22.27 0.19 -1.91 16 25 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 26 C -0.13 -1.83 10.05 22.27 0.22 -1.60 16 27 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 28 C -0.12 -2.17 9.70 22.27 0.22 -1.95 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.85 6.95 -2.39 -0.02 1.83 16 31 H 0.07 1.94 6.68 -2.39 -0.02 1.93 16 32 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 33 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 34 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 36 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.34 8.75 6.08 -89.69 -0.55 8.20 16 38 H 0.07 1.81 6.26 -2.39 -0.01 1.79 16 39 H 0.03 0.64 6.97 -2.39 -0.02 0.62 16 40 H 0.06 1.12 7.80 -2.39 -0.02 1.10 16 41 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.05 0.76 6.71 -2.39 -0.02 0.74 16 46 H 0.08 1.74 6.24 -2.38 -0.01 1.73 16 47 H 0.04 0.87 6.71 -2.39 -0.02 0.86 16 48 H 0.12 1.84 7.29 -2.91 -0.02 1.82 16 49 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 50 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 51 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 52 H 0.12 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -64.91 398.53 -0.65 -65.56 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.33 Total: 21.93 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 4.55 Total: -39.56 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -7.54 Total: -94.67 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -64.91 -0.65 -65.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548654.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.388 kcal (2) G-P(sol) polarization free energy of solvation -64.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds