Wall clock time and date at job start Tue Mar 31 2020 11:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47176 * 2 1 4 4 C 1.52997 * 109.47112 * 239.99985 * 2 1 3 5 5 C 1.50704 * 109.47058 * 64.99994 * 4 2 1 6 6 H 1.08000 * 120.00132 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99765 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00139 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99932 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47219 * 90.00296 * 9 7 5 11 11 H 1.48501 * 109.47188 * 210.00387 * 9 7 5 12 12 H 1.48508 * 109.47324 * 330.00285 * 9 7 5 13 13 C 1.53001 * 109.47196 * 120.00042 * 2 1 3 14 14 N 1.46897 * 109.47031 * 294.99763 * 13 2 1 15 15 C 1.46900 * 111.00331 * 180.02562 * 14 13 2 16 16 H 1.09009 * 109.50332 * 35.07838 * 15 14 13 17 17 C 1.53121 * 109.50164 * 275.00561 * 15 14 13 18 18 C 1.53124 * 109.15596 * 182.36095 * 17 15 14 19 19 C 1.53037 * 109.28135 * 57.65394 * 18 17 15 20 20 N 1.46843 * 109.52036 * 300.81816 * 19 18 17 21 21 C 1.46904 * 110.99734 * 185.83628 * 20 19 18 22 22 C 1.50701 * 109.46874 * 66.04733 * 21 20 19 23 23 C 1.38235 * 119.99808 * 89.99842 * 22 21 20 24 24 C 1.38243 * 119.99602 * 179.97438 * 23 22 21 25 25 C 1.38231 * 120.00070 * 0.07188 * 24 23 22 26 26 C 1.38234 * 119.99869 * 359.88510 * 25 24 23 27 27 C 1.38230 * 119.99865 * 269.97587 * 22 21 20 28 28 C 1.46851 * 111.20092 * 61.74442 * 20 19 18 29 29 H 1.09002 * 109.47292 * 300.00022 * 1 2 3 30 30 H 1.08999 * 109.47437 * 60.00211 * 1 2 3 31 31 H 1.09004 * 109.47119 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47359 * 184.99778 * 4 2 1 33 33 H 1.08999 * 109.47589 * 304.99706 * 4 2 1 34 34 H 0.97006 * 120.00033 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46874 * 175.00420 * 13 2 1 36 36 H 1.08992 * 109.47627 * 55.00135 * 13 2 1 37 37 H 1.00896 * 111.00350 * 303.95431 * 14 13 2 38 38 H 1.08995 * 109.52775 * 62.45823 * 17 15 14 39 39 H 1.08999 * 109.52028 * 302.25967 * 17 15 14 40 40 H 1.08999 * 109.50644 * 297.70626 * 18 17 15 41 41 H 1.09004 * 109.53210 * 177.61477 * 18 17 15 42 42 H 1.08993 * 109.46287 * 180.80011 * 19 18 17 43 43 H 1.09008 * 109.45297 * 60.82694 * 19 18 17 44 44 H 1.08993 * 109.47642 * 306.04297 * 21 20 19 45 45 H 1.09001 * 109.46800 * 186.04068 * 21 20 19 46 46 H 1.08000 * 120.00616 * 359.70324 * 23 22 21 47 47 H 1.08001 * 119.99556 * 179.97438 * 24 23 22 48 48 H 1.08005 * 119.99882 * 180.02562 * 25 24 23 49 49 H 1.08007 * 119.99474 * 180.10845 * 26 25 24 50 50 H 1.08001 * 120.00350 * 359.97438 * 27 22 21 51 51 H 1.09002 * 109.46120 * 58.26904 * 28 20 19 52 52 H 1.08998 * 109.46157 * 178.24132 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6412 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 2.6763 -1.5187 -3.8511 9 14 1.4984 0.5626 -5.2496 10 1 2.5630 1.5429 -5.5823 11 1 1.3121 -0.3715 -6.3889 12 1 0.2266 1.2831 -4.9872 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1258 -0.6264 3.6672 16 1 3.0903 -1.0965 3.4748 17 6 1.1138 -1.6928 4.0953 18 6 1.5865 -2.3387 5.4008 19 6 1.7514 -1.2559 6.4695 20 7 2.7297 -0.2606 6.0128 21 6 3.0167 0.7188 7.0694 22 6 3.7130 0.0315 8.2156 23 6 5.0928 -0.0505 8.2370 24 6 5.7315 -0.6806 9.2887 25 6 4.9904 -1.2298 10.3182 26 6 3.6107 -1.1470 10.2972 27 6 2.9720 -0.5165 9.2458 28 6 2.2751 0.4068 4.7862 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1263 -0.7994 -1.2056 33 1 1.6054 -1.7198 -1.2952 34 1 2.9236 -1.8417 -4.7318 35 1 3.1263 -0.7994 1.2056 36 1 1.6054 -1.7198 1.2952 37 1 1.9881 0.9873 2.3967 38 1 1.0366 -2.4543 3.3193 39 1 0.1396 -1.2291 4.2503 40 1 2.5424 -2.8357 5.2356 41 1 0.8492 -3.0693 5.7337 42 1 2.1015 -1.7106 7.3962 43 1 0.7919 -0.7687 6.6439 44 1 2.0832 1.1574 7.4218 45 1 3.6599 1.5040 6.6719 46 1 5.6716 0.3738 7.4299 47 1 6.8095 -0.7450 9.3052 48 1 5.4895 -1.7217 11.1401 49 1 3.0318 -1.5747 11.1025 50 1 1.8941 -0.4518 9.2295 51 1 1.3133 0.8861 4.9686 52 1 3.0057 1.1596 4.4903 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602562680.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:52 Heat of formation + Delta-G solvation = 5.840334 kcal Electronic energy + Delta-G solvation = -25988.865873 eV Core-core repulsion = 22565.751166 eV Total energy + Delta-G solvation = -3423.114708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.04031 -38.84051 -36.61173 -34.55125 -33.07374 -31.88218 -31.29490 -31.17463 -28.92825 -26.70726 -26.57137 -25.01563 -23.32653 -23.06515 -22.58726 -21.92272 -20.92890 -19.78374 -18.96240 -17.06019 -16.32934 -16.26772 -15.71139 -15.58262 -15.22961 -14.86338 -14.62698 -14.40383 -14.30454 -13.79365 -13.71194 -13.66105 -13.43339 -12.88346 -12.81111 -12.71114 -12.31568 -12.17830 -11.99111 -11.73410 -11.41085 -11.39596 -11.23853 -11.21900 -10.88297 -10.84462 -10.76821 -10.59405 -10.39760 -10.24203 -10.12628 -9.66507 -9.18129 -9.12454 -9.06866 -8.91913 -8.50649 -8.30598 -8.08869 -5.95326 -3.96335 1.03969 1.12845 3.34293 3.35280 3.40585 3.44041 3.82417 4.40169 4.47567 4.52429 4.55636 4.70187 4.73313 4.81973 4.90895 4.96293 5.02669 5.14925 5.21211 5.28392 5.34039 5.37268 5.40357 5.44922 5.58099 5.69148 5.71527 5.73541 5.76197 5.81608 5.83135 5.97754 6.01379 6.16462 6.18066 6.21677 6.23246 6.33367 6.38669 6.46385 6.59976 6.70142 6.72280 6.84244 6.85359 7.06171 7.21205 7.23858 7.42925 7.68818 7.73443 7.88769 8.05150 8.49205 9.10101 9.66812 11.16166 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.030003 B = 0.001962 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.002394 B =14268.412342 C =14524.666328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.067 3.933 14 N -0.684 5.684 15 C 0.091 3.909 16 H 0.050 0.950 17 C -0.108 4.108 18 C -0.117 4.117 19 C 0.053 3.947 20 N -0.531 5.531 21 C 0.093 3.907 22 C -0.074 4.074 23 C -0.098 4.098 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.115 4.115 28 C 0.057 3.943 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.012 0.988 33 H 0.016 0.984 34 H 0.259 0.741 35 H 0.024 0.976 36 H 0.066 0.934 37 H 0.336 0.664 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.032 0.968 44 H 0.042 0.958 45 H 0.083 0.917 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.118 0.882 51 H 0.042 0.958 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.671 1.620 29.678 29.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.062 4.062 14 N -0.315 5.315 15 C -0.019 4.019 16 H 0.068 0.932 17 C -0.146 4.146 18 C -0.155 4.155 19 C -0.075 4.075 20 N -0.255 5.255 21 C -0.034 4.034 22 C -0.075 4.075 23 C -0.117 4.117 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.133 4.133 28 C -0.071 4.071 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.030 0.970 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.154 0.846 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.050 0.950 44 H 0.061 0.939 45 H 0.102 0.898 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.060 0.940 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.537 0.983 29.447 29.503 hybrid contribution 0.064 0.988 -0.807 1.277 sum 1.601 1.971 28.640 28.753 Atomic orbital electron populations 1.21579 0.95766 1.00509 1.00063 1.21199 0.95961 0.98876 0.94090 0.92900 1.19120 0.95900 0.95570 0.90449 1.21243 1.34504 1.08266 0.91002 0.92584 1.25031 0.95402 0.95108 0.99105 1.69970 1.39158 1.21197 1.23338 0.86627 0.78900 0.79789 0.82870 1.20796 1.21321 1.19906 1.22173 0.97082 0.97704 0.89242 1.60574 1.63970 1.05590 1.01334 1.21454 0.96839 0.94323 0.89317 0.93215 1.21572 0.98829 0.97836 0.96377 1.21586 1.01741 0.97176 0.94990 1.22197 0.93072 0.93621 0.98600 1.61872 1.44834 1.15079 1.03743 1.21030 0.98808 0.93550 0.90034 1.19741 0.93856 0.98773 0.95122 1.21052 0.93937 0.98756 0.97906 1.21173 0.99928 0.98372 0.94463 1.21151 0.94186 0.99952 0.98795 1.21110 0.94750 0.99737 0.98436 1.21063 0.99587 0.98453 0.94219 1.22220 0.99100 0.96005 0.89765 0.93991 0.92848 0.94229 0.96952 0.96581 0.93126 0.95755 0.91587 0.84617 0.91675 0.91681 0.91290 0.91490 0.90479 0.94995 0.93934 0.89843 0.85939 0.86115 0.86280 0.86221 0.86404 0.93955 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.89 37.15 0.33 -2.06 16 2 C -0.08 -1.69 2.48 -90.62 -0.22 -1.92 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.07 1.16 4.87 -3.82 -0.02 1.14 16 14 N -0.68 -9.82 5.77 -106.64 -0.61 -10.44 16 15 C 0.09 1.15 2.65 -67.63 -0.18 0.97 16 16 H 0.05 0.70 7.80 -51.92 -0.41 0.30 16 17 C -0.11 -1.30 5.49 -26.60 -0.15 -1.45 16 18 C -0.12 -1.20 6.09 -26.65 -0.16 -1.36 16 19 C 0.05 0.51 5.16 -3.84 -0.02 0.49 16 20 N -0.53 -5.37 4.65 -236.11 -1.10 -6.47 16 21 C 0.09 0.81 5.12 -4.97 -0.03 0.78 16 22 C -0.07 -0.65 4.89 -104.63 -0.51 -1.17 16 23 C -0.10 -0.85 9.70 -39.58 -0.38 -1.23 16 24 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 25 C -0.12 -0.91 10.05 -39.59 -0.40 -1.31 16 26 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 27 C -0.11 -0.93 7.88 -39.59 -0.31 -1.24 16 28 C 0.06 0.61 4.73 -3.83 -0.02 0.59 16 29 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 30 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.02 0.44 8.06 -51.93 -0.42 0.02 16 36 H 0.07 1.19 7.49 -51.93 -0.39 0.80 16 37 H 0.34 4.55 8.36 -39.29 -0.33 4.23 16 38 H 0.06 0.86 7.52 -51.93 -0.39 0.47 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.72 5.75 -51.93 -0.30 0.42 16 43 H 0.03 0.30 8.14 -51.92 -0.42 -0.12 16 44 H 0.04 0.35 8.06 -51.93 -0.42 -0.07 16 45 H 0.08 0.68 7.93 -51.93 -0.41 0.26 16 46 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 48 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 49 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 50 H 0.12 0.82 7.95 -52.49 -0.42 0.40 16 51 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.07 0.74 8.00 -51.93 -0.42 0.32 16 LS Contribution 403.49 15.07 6.08 6.08 Total: -1.00 -30.22 403.49 -12.95 -43.17 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -9.66 Total: 0.39 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -3.38 Total: -23.12 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: -0.98 Total: -43.38 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.22 -12.95 -43.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602562680.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.014 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds