Wall clock time and date at job start Tue Mar 31 2020 11:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47176 * 2 1 4 4 C 1.52997 * 109.47112 * 239.99985 * 2 1 3 5 5 C 1.50704 * 109.47058 * 64.99994 * 4 2 1 6 6 H 1.08000 * 120.00132 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99765 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00139 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99932 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47219 * 90.00296 * 9 7 5 11 11 H 1.48501 * 109.47188 * 210.00387 * 9 7 5 12 12 H 1.48508 * 109.47324 * 330.00285 * 9 7 5 13 13 C 1.53001 * 109.47196 * 120.00042 * 2 1 3 14 14 N 1.46897 * 109.47031 * 294.99763 * 13 2 1 15 15 C 1.46900 * 111.00331 * 180.02562 * 14 13 2 16 16 H 1.09009 * 109.50332 * 35.07838 * 15 14 13 17 17 C 1.53121 * 109.50164 * 275.00561 * 15 14 13 18 18 C 1.53124 * 109.15596 * 182.36095 * 17 15 14 19 19 C 1.53037 * 109.28135 * 57.65394 * 18 17 15 20 20 N 1.46843 * 109.52036 * 300.81816 * 19 18 17 21 21 C 1.46904 * 110.99734 * 185.83628 * 20 19 18 22 22 C 1.50701 * 109.46874 * 66.04733 * 21 20 19 23 23 C 1.38235 * 119.99808 * 89.99842 * 22 21 20 24 24 C 1.38243 * 119.99602 * 179.97438 * 23 22 21 25 25 C 1.38231 * 120.00070 * 0.07188 * 24 23 22 26 26 C 1.38234 * 119.99869 * 359.88510 * 25 24 23 27 27 C 1.38230 * 119.99865 * 269.97587 * 22 21 20 28 28 C 1.46851 * 111.20092 * 61.74442 * 20 19 18 29 29 H 1.09002 * 109.47292 * 300.00022 * 1 2 3 30 30 H 1.08999 * 109.47437 * 60.00211 * 1 2 3 31 31 H 1.09004 * 109.47119 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47359 * 184.99778 * 4 2 1 33 33 H 1.08999 * 109.47589 * 304.99706 * 4 2 1 34 34 H 0.97006 * 120.00033 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46874 * 175.00420 * 13 2 1 36 36 H 1.08992 * 109.47627 * 55.00135 * 13 2 1 37 37 H 1.00896 * 111.00350 * 303.95431 * 14 13 2 38 38 H 1.08995 * 109.52775 * 62.45823 * 17 15 14 39 39 H 1.08999 * 109.52028 * 302.25967 * 17 15 14 40 40 H 1.08999 * 109.50644 * 297.70626 * 18 17 15 41 41 H 1.09004 * 109.53210 * 177.61477 * 18 17 15 42 42 H 1.08993 * 109.46287 * 180.80011 * 19 18 17 43 43 H 1.09008 * 109.45297 * 60.82694 * 19 18 17 44 44 H 1.08993 * 109.47642 * 306.04297 * 21 20 19 45 45 H 1.09001 * 109.46800 * 186.04068 * 21 20 19 46 46 H 1.08000 * 120.00616 * 359.70324 * 23 22 21 47 47 H 1.08001 * 119.99556 * 179.97438 * 24 23 22 48 48 H 1.08005 * 119.99882 * 180.02562 * 25 24 23 49 49 H 1.08007 * 119.99474 * 180.10845 * 26 25 24 50 50 H 1.08001 * 120.00350 * 359.97438 * 27 22 21 51 51 H 1.09002 * 109.46120 * 58.26904 * 28 20 19 52 52 H 1.08998 * 109.46157 * 178.24132 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6412 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 2.6763 -1.5187 -3.8511 9 14 1.4984 0.5626 -5.2496 10 1 2.5630 1.5429 -5.5823 11 1 1.3121 -0.3715 -6.3889 12 1 0.2266 1.2831 -4.9872 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1258 -0.6264 3.6672 16 1 3.0903 -1.0965 3.4748 17 6 1.1138 -1.6928 4.0953 18 6 1.5865 -2.3387 5.4008 19 6 1.7514 -1.2559 6.4695 20 7 2.7297 -0.2606 6.0128 21 6 3.0167 0.7188 7.0694 22 6 3.7130 0.0315 8.2156 23 6 5.0928 -0.0505 8.2370 24 6 5.7315 -0.6806 9.2887 25 6 4.9904 -1.2298 10.3182 26 6 3.6107 -1.1470 10.2972 27 6 2.9720 -0.5165 9.2458 28 6 2.2751 0.4068 4.7862 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1263 -0.7994 -1.2056 33 1 1.6054 -1.7198 -1.2952 34 1 2.9236 -1.8417 -4.7318 35 1 3.1263 -0.7994 1.2056 36 1 1.6054 -1.7198 1.2952 37 1 1.9881 0.9873 2.3967 38 1 1.0366 -2.4543 3.3193 39 1 0.1396 -1.2291 4.2503 40 1 2.5424 -2.8357 5.2356 41 1 0.8492 -3.0693 5.7337 42 1 2.1015 -1.7106 7.3962 43 1 0.7919 -0.7687 6.6439 44 1 2.0832 1.1574 7.4218 45 1 3.6599 1.5040 6.6719 46 1 5.6716 0.3738 7.4299 47 1 6.8095 -0.7450 9.3052 48 1 5.4895 -1.7217 11.1401 49 1 3.0318 -1.5747 11.1025 50 1 1.8941 -0.4518 9.2295 51 1 1.3133 0.8861 4.9686 52 1 3.0057 1.1596 4.4903 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602562680.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:52 Heat of formation + Delta-G solvation = -10.511587 kcal Electronic energy + Delta-G solvation = -25989.574946 eV Core-core repulsion = 22565.751166 eV Total energy + Delta-G solvation = -3423.823780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.76322 -39.63972 -37.99343 -35.89078 -34.49817 -33.46816 -32.00706 -31.75255 -30.15378 -28.61241 -27.30018 -26.54662 -24.61748 -24.04083 -23.46575 -22.92613 -21.65780 -20.95202 -20.43707 -18.48349 -17.65154 -17.12282 -16.58805 -16.50517 -16.36598 -16.19386 -15.73881 -15.59489 -15.36648 -14.97574 -14.82652 -14.48671 -14.24247 -14.17015 -14.07514 -13.58090 -13.42826 -13.36248 -13.23056 -13.17157 -12.78115 -12.74531 -12.62784 -12.30054 -12.20760 -12.05088 -11.94044 -11.81652 -11.72493 -11.57534 -11.40748 -11.31191 -11.06288 -10.85253 -10.53213 -9.76289 -9.68772 -9.34585 -9.24937 -8.17076 -6.26323 0.45077 0.54819 1.40246 1.41454 1.52529 2.42129 2.65126 3.06946 3.16142 3.44299 3.74199 3.82203 3.97911 4.01231 4.10313 4.15611 4.20116 4.27955 4.33653 4.36101 4.38128 4.43645 4.53045 4.58479 4.61040 4.67937 4.72308 4.77649 4.84063 4.89176 4.90972 4.98114 5.00217 5.04692 5.10849 5.15143 5.20316 5.23228 5.31289 5.42656 5.47228 5.51572 5.57039 5.59948 5.66849 5.73600 5.81649 5.89207 5.99275 6.07246 6.16945 6.18072 6.31899 6.53421 6.89782 7.41837 8.94990 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.030003 B = 0.001962 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.002394 B =14268.412342 C =14524.666328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.073 4.073 3 H 0.055 0.945 4 C 0.032 3.968 5 C -0.528 4.528 6 H 0.062 0.938 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.963 3.037 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.082 3.918 14 N -0.677 5.677 15 C 0.093 3.907 16 H 0.033 0.967 17 C -0.105 4.105 18 C -0.112 4.112 19 C 0.057 3.943 20 N -0.540 5.540 21 C 0.096 3.904 22 C -0.086 4.086 23 C -0.114 4.114 24 C -0.131 4.131 25 C -0.129 4.129 26 C -0.128 4.128 27 C -0.122 4.122 28 C 0.066 3.934 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.033 0.967 32 H -0.016 1.016 33 H -0.012 1.012 34 H 0.262 0.738 35 H 0.014 0.986 36 H 0.058 0.942 37 H 0.344 0.656 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.038 0.962 44 H 0.049 0.951 45 H 0.086 0.914 46 H 0.123 0.877 47 H 0.134 0.866 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.128 0.872 51 H 0.045 0.955 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.849 2.750 31.190 31.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 H 0.074 0.926 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.202 4.202 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.187 1.187 13 C -0.047 4.047 14 N -0.308 5.308 15 C -0.017 4.017 16 H 0.051 0.949 17 C -0.143 4.143 18 C -0.150 4.150 19 C -0.071 4.071 20 N -0.265 5.265 21 C -0.031 4.031 22 C -0.087 4.087 23 C -0.133 4.133 24 C -0.149 4.149 25 C -0.147 4.147 26 C -0.146 4.146 27 C -0.141 4.141 28 C -0.062 4.062 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.003 0.997 33 H 0.007 0.993 34 H 0.070 0.930 35 H 0.032 0.968 36 H 0.076 0.924 37 H 0.162 0.838 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.105 0.895 46 H 0.141 0.859 47 H 0.152 0.848 48 H 0.156 0.844 49 H 0.157 0.843 50 H 0.146 0.854 51 H 0.064 0.936 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.712 2.128 30.983 31.064 hybrid contribution 0.362 0.592 -1.211 1.396 sum 1.074 2.720 29.771 29.914 Atomic orbital electron populations 1.21470 0.94624 1.00267 1.00515 1.21011 0.96744 0.98442 0.93030 0.92622 1.19014 0.94005 0.94672 0.92856 1.21643 1.34344 1.08582 0.92024 0.91982 1.25986 0.95329 0.96136 1.02750 1.70111 1.40360 1.22941 1.24256 0.85482 0.79019 0.78330 0.78430 1.19895 1.20976 1.18694 1.21833 0.96186 0.97283 0.89408 1.60506 1.63827 1.05765 1.00742 1.21457 0.96114 0.94966 0.89162 0.94877 1.21535 0.98675 0.97256 0.96859 1.21551 1.01516 0.97608 0.94322 1.22165 0.93276 0.93284 0.98348 1.61846 1.45029 1.15632 1.04013 1.21026 0.99177 0.93252 0.89610 1.19818 0.94001 0.99388 0.95491 1.21204 0.94225 0.99401 0.98441 1.21420 1.00851 0.98227 0.94420 1.21457 0.94442 0.99669 0.99157 1.21408 0.95077 0.99378 0.98762 1.21243 1.00182 0.98406 0.94230 1.22082 0.99494 0.95285 0.89387 0.91368 0.94378 0.94821 0.99723 0.99330 0.92975 0.96759 0.92368 0.83769 0.93291 0.91630 0.92371 0.90011 0.89948 0.94400 0.93243 0.89525 0.85926 0.84797 0.84404 0.84346 0.85413 0.93630 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.30 8.89 71.98 0.64 -3.66 16 2 C -0.07 -3.03 2.48 -10.80 -0.03 -3.06 16 3 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 4 C 0.03 1.72 4.45 29.85 0.13 1.85 16 5 C -0.53 -30.19 8.41 25.60 0.22 -29.98 16 6 H 0.06 3.40 7.06 -2.91 -0.02 3.38 16 7 C 0.00 -0.29 5.46 84.66 0.46 0.17 16 8 N -0.94 -57.98 13.29 21.45 0.28 -57.69 16 9 Si 0.96 44.94 29.54 68.60 2.03 46.96 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 13 C 0.08 2.90 4.87 86.30 0.42 3.32 16 14 N -0.68 -18.83 5.77 -491.30 -2.83 -21.67 16 15 C 0.09 2.28 2.65 44.97 0.12 2.40 16 16 H 0.03 0.94 7.80 -2.38 -0.02 0.92 16 17 C -0.10 -2.45 5.49 30.68 0.17 -2.29 16 18 C -0.11 -2.17 6.09 30.65 0.19 -1.98 16 19 C 0.06 1.00 5.16 86.33 0.45 1.45 16 20 N -0.54 -10.20 4.65 -900.92 -4.19 -14.39 16 21 C 0.10 1.53 5.12 85.56 0.44 1.97 16 22 C -0.09 -1.42 4.89 -19.87 -0.10 -1.51 16 23 C -0.11 -1.90 9.70 22.27 0.22 -1.68 16 24 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 25 C -0.13 -1.70 10.05 22.27 0.22 -1.47 16 26 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 27 C -0.12 -1.77 7.88 22.27 0.18 -1.59 16 28 C 0.07 1.31 4.73 86.32 0.41 1.72 16 29 H 0.07 2.26 7.75 -2.39 -0.02 2.24 16 30 H 0.04 1.56 6.95 -2.39 -0.02 1.54 16 31 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 32 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 33 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 35 H 0.01 0.53 8.06 -2.39 -0.02 0.51 16 36 H 0.06 2.14 7.49 -2.39 -0.02 2.12 16 37 H 0.34 8.80 8.36 -89.70 -0.75 8.05 16 38 H 0.05 1.29 7.52 -2.39 -0.02 1.27 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.08 1.39 5.75 -2.39 -0.01 1.37 16 43 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 44 H 0.05 0.72 8.06 -2.39 -0.02 0.70 16 45 H 0.09 1.29 7.93 -2.39 -0.02 1.28 16 46 H 0.12 1.91 8.06 -2.91 -0.02 1.89 16 47 H 0.13 1.48 8.06 -2.91 -0.02 1.45 16 48 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 49 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 50 H 0.13 1.52 7.95 -2.91 -0.02 1.49 16 51 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 52 H 0.08 1.47 8.00 -2.39 -0.02 1.45 16 Total: -1.00 -65.18 403.49 -0.02 -65.20 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.11 Total: 19.07 kcal Atomic # 6 Polarization: -42.07 SS G_CDS: 4.58 Total: -37.49 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -6.73 Total: -93.74 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -65.18 -0.02 -65.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602562680.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.687 kcal (2) G-P(sol) polarization free energy of solvation -65.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds