Wall clock time and date at job start Tue Mar 31 2020 11:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47162 * 2 1 4 4 C 1.53002 * 109.47258 * 119.99534 * 2 1 3 5 5 C 1.50697 * 109.47299 * 295.00385 * 4 2 1 6 6 H 1.08001 * 119.99840 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99986 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00225 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99880 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47056 * 60.00222 * 9 7 5 11 11 H 1.48496 * 109.47141 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47304 * 300.00139 * 9 7 5 13 13 C 1.52997 * 109.47388 * 240.00049 * 2 1 3 14 14 N 1.46895 * 109.47647 * 64.99697 * 13 2 1 15 15 C 1.46900 * 111.00575 * 179.97438 * 14 13 2 16 16 H 1.08997 * 109.53193 * 325.10573 * 15 14 13 17 17 C 1.53123 * 109.48930 * 85.20261 * 15 14 13 18 18 C 1.53127 * 109.15019 * 177.60800 * 17 15 14 19 19 C 1.53042 * 109.27596 * 302.34079 * 18 17 15 20 20 N 1.46843 * 109.52278 * 59.17923 * 19 18 17 21 21 C 1.46895 * 110.99970 * 174.15687 * 20 19 18 22 22 C 1.50701 * 109.47042 * 314.21155 * 21 20 19 23 23 C 1.38235 * 119.99858 * 269.72331 * 22 21 20 24 24 C 1.38237 * 119.99832 * 179.77009 * 23 22 21 25 25 C 1.38240 * 119.99718 * 0.50306 * 24 23 22 26 26 C 1.38229 * 120.00111 * 359.75133 * 25 24 23 27 27 C 1.38231 * 120.00120 * 359.97438 * 26 25 24 28 28 C 1.46847 * 111.20124 * 298.25596 * 20 19 18 29 29 H 1.09002 * 109.47023 * 60.00148 * 1 2 3 30 30 H 1.08994 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47183 * 300.00142 * 1 2 3 32 32 H 1.09003 * 109.46936 * 55.00207 * 4 2 1 33 33 H 1.08994 * 109.47292 * 175.00019 * 4 2 1 34 34 H 0.97005 * 120.00104 * 180.02562 * 8 7 5 35 35 H 1.09009 * 109.47241 * 304.99680 * 13 2 1 36 36 H 1.08998 * 109.47386 * 185.00050 * 13 2 1 37 37 H 1.00904 * 111.00238 * 303.95810 * 14 13 2 38 38 H 1.09003 * 109.53012 * 57.70373 * 17 15 14 39 39 H 1.08997 * 109.57453 * 297.53650 * 17 15 14 40 40 H 1.08997 * 109.49981 * 182.39822 * 18 17 15 41 41 H 1.08998 * 109.53089 * 62.30397 * 18 17 15 42 42 H 1.08993 * 109.46299 * 299.16259 * 19 18 17 43 43 H 1.09000 * 109.45057 * 179.19029 * 19 18 17 44 44 H 1.08997 * 109.47358 * 74.21117 * 21 20 19 45 45 H 1.09001 * 109.47788 * 194.20927 * 21 20 19 46 46 H 1.08002 * 120.00333 * 359.97438 * 23 22 21 47 47 H 1.08003 * 119.99933 * 180.23056 * 24 23 22 48 48 H 1.08003 * 119.99736 * 179.72572 * 25 24 23 49 49 H 1.08004 * 119.99888 * 179.97438 * 26 25 24 50 50 H 1.08001 * 120.00399 * 179.97438 * 27 26 25 51 51 H 1.09002 * 109.46481 * 181.76055 * 28 20 19 52 52 H 1.08994 * 109.46283 * 301.73908 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9746 2.3756 7 6 1.9923 -0.4021 3.7283 8 7 2.6756 -1.5191 3.8512 9 14 1.4987 0.5631 5.2496 10 1 0.0188 0.6707 5.3089 11 1 1.9925 -0.1375 6.4622 12 1 2.0917 1.9231 5.1871 13 6 2.0400 -0.7212 -1.2492 14 7 1.6515 0.0373 -2.4456 15 6 2.1259 -0.6266 -3.6672 16 1 3.0889 -1.0995 -3.4744 17 6 1.1113 -1.6895 -4.0979 18 6 1.5837 -2.3349 -5.4037 19 6 1.7529 -1.2509 -6.4708 20 7 2.7333 -0.2589 -6.0114 21 6 3.0244 0.7211 -7.0662 22 6 3.2476 0.0024 -8.3719 23 6 4.5196 -0.4051 -8.7279 24 6 4.7236 -1.0686 -9.9233 25 6 3.6572 -1.3153 -10.7676 26 6 2.3860 -0.9032 -10.4140 27 6 2.1811 -0.2447 -9.2160 28 6 2.2791 0.4079 -4.7844 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6054 -1.7197 1.2953 33 1 3.1263 -0.7994 1.2057 34 1 2.9222 -1.8423 4.7319 35 1 1.6055 -1.7199 -1.2951 36 1 3.1263 -0.7994 -1.2055 37 1 0.6529 0.1792 -2.4754 38 1 0.1385 -1.2229 -4.2533 39 1 1.0301 -2.4520 -3.3233 40 1 0.8444 -3.0626 -5.7382 41 1 2.5380 -2.8351 -5.2385 42 1 0.7951 -0.7609 -6.6457 43 1 2.1030 -1.7054 -7.3976 44 1 2.1828 1.4063 -7.1679 45 1 3.9205 1.2830 -6.8030 46 1 5.3536 -0.2081 -8.0705 47 1 5.7169 -1.3903 -10.1997 48 1 3.8172 -1.8298 -11.7036 49 1 1.5529 -1.0956 -11.0738 50 1 1.1880 0.0777 -8.9399 51 1 3.0114 1.1584 -4.4865 52 1 1.3188 0.8900 -4.9672 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602562681.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:55 Heat of formation + Delta-G solvation = 7.387139 kcal Electronic energy + Delta-G solvation = -26041.153636 eV Core-core repulsion = 22618.106003 eV Total energy + Delta-G solvation = -3423.047633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.16609 -38.84232 -36.69537 -34.61381 -32.98443 -31.83028 -31.31570 -31.19710 -28.84469 -26.75405 -26.59162 -25.16477 -23.27680 -23.01841 -22.64971 -21.94981 -20.91772 -19.98408 -18.87268 -17.05801 -16.44183 -16.30402 -15.71339 -15.61946 -15.13479 -14.86265 -14.57656 -14.40293 -14.24184 -13.91651 -13.70136 -13.63171 -13.21656 -13.03068 -12.79069 -12.69682 -12.39692 -12.23633 -12.13842 -11.86480 -11.45304 -11.31476 -11.27576 -11.19501 -10.94838 -10.86464 -10.78385 -10.61610 -10.57551 -10.29226 -10.14607 -9.68681 -9.20424 -9.12344 -9.09370 -8.94276 -8.44440 -8.30338 -8.05815 -5.95112 -3.96280 1.00739 1.10440 3.35996 3.36019 3.40329 3.42855 3.83040 4.36922 4.48635 4.53101 4.60490 4.69449 4.75100 4.80301 4.82069 4.91920 5.03955 5.18791 5.21663 5.29681 5.35711 5.40447 5.42815 5.50321 5.56661 5.57494 5.69728 5.74583 5.74944 5.80473 5.83605 5.90679 5.95182 6.07366 6.13181 6.14841 6.21073 6.23868 6.32886 6.33640 6.49304 6.59156 6.68094 6.88824 6.89916 7.01697 7.13173 7.20520 7.42732 7.69456 7.73155 7.89226 8.05228 8.49068 9.09889 9.66870 11.16314 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.036072 B = 0.001923 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.040920 B =14557.401728 C =14654.068163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.067 3.933 14 N -0.686 5.686 15 C 0.092 3.908 16 H 0.084 0.916 17 C -0.151 4.151 18 C -0.112 4.112 19 C 0.052 3.948 20 N -0.531 5.531 21 C 0.094 3.906 22 C -0.080 4.080 23 C -0.099 4.099 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.114 4.114 28 C 0.070 3.930 29 H 0.031 0.969 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.014 0.986 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.024 0.976 36 H 0.067 0.933 37 H 0.337 0.663 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.029 0.971 43 H 0.079 0.921 44 H 0.042 0.958 45 H 0.085 0.915 46 H 0.125 0.875 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.118 0.882 51 H 0.082 0.918 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.465 0.595 -29.970 29.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 H 0.083 0.917 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.061 4.061 14 N -0.317 5.317 15 C -0.019 4.019 16 H 0.103 0.897 17 C -0.190 4.190 18 C -0.151 4.151 19 C -0.076 4.076 20 N -0.256 5.256 21 C -0.033 4.033 22 C -0.080 4.080 23 C -0.117 4.117 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.133 4.133 28 C -0.058 4.058 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.032 0.968 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.156 0.844 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.047 0.953 43 H 0.098 0.902 44 H 0.060 0.940 45 H 0.104 0.896 46 H 0.143 0.857 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.101 0.899 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.586 0.677 -29.654 29.667 hybrid contribution -1.661 0.034 0.671 1.792 sum -1.076 0.711 -28.983 29.011 Atomic orbital electron populations 1.21735 0.96768 1.00374 1.00190 1.21229 0.94790 1.00104 0.94233 0.91674 1.19100 0.96142 0.95329 0.90342 1.21203 1.34685 1.08241 0.91013 0.92639 1.25023 0.95363 0.95110 0.99086 1.69957 1.39031 1.21221 1.23444 0.86689 0.78816 0.80156 0.82506 1.20356 1.21394 1.20277 1.22138 1.00242 0.94468 0.89263 1.60530 1.19527 1.50308 1.01304 1.21508 0.98521 0.92205 0.89655 0.89741 1.22348 0.99274 0.99602 0.97822 1.21518 1.01702 0.97215 0.94643 1.22220 0.93211 0.93624 0.98498 1.61982 1.44533 1.15237 1.03877 1.21072 1.01394 0.92941 0.87921 1.19791 0.93578 0.99080 0.95564 1.21078 0.96725 0.97573 0.96343 1.21183 0.99032 0.99062 0.94646 1.21160 0.92996 1.00196 0.99707 1.21108 0.97196 0.98995 0.96762 1.21088 0.98454 0.99299 0.94458 1.22032 0.99059 0.96140 0.88605 0.95043 0.94080 0.91915 0.96798 0.96654 0.93062 0.95813 0.91463 0.84386 0.92349 0.91625 0.91800 0.91071 0.95316 0.90240 0.93978 0.89624 0.85737 0.86064 0.86252 0.86198 0.86438 0.89922 0.95002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.77 37.16 0.33 -2.17 16 2 C -0.08 -1.74 2.54 -90.62 -0.23 -1.97 16 3 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.45 8.41 -34.44 -0.29 -14.74 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.07 1.17 4.94 -3.83 -0.02 1.16 16 14 N -0.69 -10.01 6.25 -106.64 -0.67 -10.68 16 15 C 0.09 1.16 2.63 -67.63 -0.18 0.98 16 16 H 0.08 1.19 7.80 -51.93 -0.41 0.78 16 17 C -0.15 -1.72 5.25 -26.60 -0.14 -1.86 16 18 C -0.11 -1.14 6.09 -26.64 -0.16 -1.30 16 19 C 0.05 0.51 4.58 -3.83 -0.02 0.49 16 20 N -0.53 -5.50 4.80 -236.13 -1.13 -6.63 16 21 C 0.09 0.84 5.43 -4.98 -0.03 0.81 16 22 C -0.08 -0.69 4.13 -104.62 -0.43 -1.12 16 23 C -0.10 -0.83 9.70 -39.58 -0.38 -1.21 16 24 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 25 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 26 C -0.12 -0.90 10.05 -39.59 -0.40 -1.30 16 27 C -0.11 -0.92 7.79 -39.58 -0.31 -1.23 16 28 C 0.07 0.79 5.03 -3.84 -0.02 0.77 16 29 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.02 0.41 7.50 -51.92 -0.39 0.02 16 36 H 0.07 1.23 8.06 -51.93 -0.42 0.81 16 37 H 0.34 4.71 6.70 -39.29 -0.26 4.45 16 38 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 39 H 0.07 0.81 7.54 -51.93 -0.39 0.42 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.78 5.64 -51.93 -0.29 0.49 16 44 H 0.04 0.36 8.02 -51.93 -0.42 -0.05 16 45 H 0.09 0.73 8.08 -51.93 -0.42 0.31 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 47 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 48 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 49 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 50 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 51 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 52 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 400.53 15.07 6.04 6.04 Total: -1.00 -29.78 400.53 -12.89 -42.67 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -9.55 Total: 1.37 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -3.30 Total: -23.18 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -1.06 Total: -43.72 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.78 -12.89 -42.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602562681.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.060 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds