Wall clock time and date at job start Tue Mar 31 2020 11:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47162 * 2 1 4 4 C 1.53002 * 109.47258 * 119.99534 * 2 1 3 5 5 C 1.50697 * 109.47299 * 295.00385 * 4 2 1 6 6 H 1.08001 * 119.99840 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99986 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00225 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99880 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47056 * 60.00222 * 9 7 5 11 11 H 1.48496 * 109.47141 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47304 * 300.00139 * 9 7 5 13 13 C 1.52997 * 109.47388 * 240.00049 * 2 1 3 14 14 N 1.46895 * 109.47647 * 64.99697 * 13 2 1 15 15 C 1.46900 * 111.00575 * 179.97438 * 14 13 2 16 16 H 1.08997 * 109.53193 * 325.10573 * 15 14 13 17 17 C 1.53123 * 109.48930 * 85.20261 * 15 14 13 18 18 C 1.53127 * 109.15019 * 177.60800 * 17 15 14 19 19 C 1.53042 * 109.27596 * 302.34079 * 18 17 15 20 20 N 1.46843 * 109.52278 * 59.17923 * 19 18 17 21 21 C 1.46895 * 110.99970 * 174.15687 * 20 19 18 22 22 C 1.50701 * 109.47042 * 314.21155 * 21 20 19 23 23 C 1.38235 * 119.99858 * 269.72331 * 22 21 20 24 24 C 1.38237 * 119.99832 * 179.77009 * 23 22 21 25 25 C 1.38240 * 119.99718 * 0.50306 * 24 23 22 26 26 C 1.38229 * 120.00111 * 359.75133 * 25 24 23 27 27 C 1.38231 * 120.00120 * 359.97438 * 26 25 24 28 28 C 1.46847 * 111.20124 * 298.25596 * 20 19 18 29 29 H 1.09002 * 109.47023 * 60.00148 * 1 2 3 30 30 H 1.08994 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47183 * 300.00142 * 1 2 3 32 32 H 1.09003 * 109.46936 * 55.00207 * 4 2 1 33 33 H 1.08994 * 109.47292 * 175.00019 * 4 2 1 34 34 H 0.97005 * 120.00104 * 180.02562 * 8 7 5 35 35 H 1.09009 * 109.47241 * 304.99680 * 13 2 1 36 36 H 1.08998 * 109.47386 * 185.00050 * 13 2 1 37 37 H 1.00904 * 111.00238 * 303.95810 * 14 13 2 38 38 H 1.09003 * 109.53012 * 57.70373 * 17 15 14 39 39 H 1.08997 * 109.57453 * 297.53650 * 17 15 14 40 40 H 1.08997 * 109.49981 * 182.39822 * 18 17 15 41 41 H 1.08998 * 109.53089 * 62.30397 * 18 17 15 42 42 H 1.08993 * 109.46299 * 299.16259 * 19 18 17 43 43 H 1.09000 * 109.45057 * 179.19029 * 19 18 17 44 44 H 1.08997 * 109.47358 * 74.21117 * 21 20 19 45 45 H 1.09001 * 109.47788 * 194.20927 * 21 20 19 46 46 H 1.08002 * 120.00333 * 359.97438 * 23 22 21 47 47 H 1.08003 * 119.99933 * 180.23056 * 24 23 22 48 48 H 1.08003 * 119.99736 * 179.72572 * 25 24 23 49 49 H 1.08004 * 119.99888 * 179.97438 * 26 25 24 50 50 H 1.08001 * 120.00399 * 179.97438 * 27 26 25 51 51 H 1.09002 * 109.46481 * 181.76055 * 28 20 19 52 52 H 1.08994 * 109.46283 * 301.73908 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9746 2.3756 7 6 1.9923 -0.4021 3.7283 8 7 2.6756 -1.5191 3.8512 9 14 1.4987 0.5631 5.2496 10 1 0.0188 0.6707 5.3089 11 1 1.9925 -0.1375 6.4622 12 1 2.0917 1.9231 5.1871 13 6 2.0400 -0.7212 -1.2492 14 7 1.6515 0.0373 -2.4456 15 6 2.1259 -0.6266 -3.6672 16 1 3.0889 -1.0995 -3.4744 17 6 1.1113 -1.6895 -4.0979 18 6 1.5837 -2.3349 -5.4037 19 6 1.7529 -1.2509 -6.4708 20 7 2.7333 -0.2589 -6.0114 21 6 3.0244 0.7211 -7.0662 22 6 3.2476 0.0024 -8.3719 23 6 4.5196 -0.4051 -8.7279 24 6 4.7236 -1.0686 -9.9233 25 6 3.6572 -1.3153 -10.7676 26 6 2.3860 -0.9032 -10.4140 27 6 2.1811 -0.2447 -9.2160 28 6 2.2791 0.4079 -4.7844 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6054 -1.7197 1.2953 33 1 3.1263 -0.7994 1.2057 34 1 2.9222 -1.8423 4.7319 35 1 1.6055 -1.7199 -1.2951 36 1 3.1263 -0.7994 -1.2055 37 1 0.6529 0.1792 -2.4754 38 1 0.1385 -1.2229 -4.2533 39 1 1.0301 -2.4520 -3.3233 40 1 0.8444 -3.0626 -5.7382 41 1 2.5380 -2.8351 -5.2385 42 1 0.7951 -0.7609 -6.6457 43 1 2.1030 -1.7054 -7.3976 44 1 2.1828 1.4063 -7.1679 45 1 3.9205 1.2830 -6.8030 46 1 5.3536 -0.2081 -8.0705 47 1 5.7169 -1.3903 -10.1997 48 1 3.8172 -1.8298 -11.7036 49 1 1.5529 -1.0956 -11.0738 50 1 1.1880 0.0777 -8.9399 51 1 3.0114 1.1584 -4.4865 52 1 1.3188 0.8900 -4.9672 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602562681.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:54 Heat of formation + Delta-G solvation = -8.879526 kcal Electronic energy + Delta-G solvation = -26041.859011 eV Core-core repulsion = 22618.106003 eV Total energy + Delta-G solvation = -3423.753009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.89297 -39.66676 -38.03949 -35.93915 -34.49569 -33.33427 -32.03536 -31.76411 -30.09399 -28.59114 -27.31605 -26.71152 -24.54347 -23.96448 -23.50953 -23.01602 -21.67976 -21.02618 -20.43613 -18.51459 -17.65733 -17.19410 -16.69287 -16.51242 -16.31568 -16.13937 -15.78203 -15.46703 -15.27760 -14.86781 -14.84002 -14.52018 -14.24407 -14.14493 -14.02843 -13.75539 -13.50053 -13.35906 -13.29036 -13.19880 -12.93870 -12.75316 -12.60554 -12.29539 -12.20054 -11.96580 -11.91176 -11.90158 -11.74624 -11.65767 -11.47291 -11.39880 -11.06016 -10.87007 -10.52219 -9.77141 -9.70604 -9.33354 -9.15818 -8.16435 -6.25736 0.42818 0.53682 1.40510 1.43470 1.51092 2.42557 2.66228 3.05635 3.16690 3.46259 3.79181 3.84860 3.85735 3.99598 4.03124 4.17919 4.18916 4.28957 4.30512 4.34369 4.39885 4.45195 4.48019 4.59989 4.62243 4.66807 4.70589 4.72821 4.76680 4.83894 4.88950 4.93164 5.00640 5.03557 5.06988 5.13496 5.19352 5.20386 5.28423 5.32873 5.40006 5.49340 5.56313 5.58897 5.66058 5.72940 5.81312 5.90156 6.02502 6.09173 6.15456 6.20716 6.32444 6.53520 6.90117 7.42348 8.95369 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.036072 B = 0.001923 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.040920 B =14557.401728 C =14654.068163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.076 4.076 3 H 0.057 0.943 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.062 0.938 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.083 3.917 14 N -0.683 5.683 15 C 0.094 3.906 16 H 0.067 0.933 17 C -0.145 4.145 18 C -0.109 4.109 19 C 0.058 3.942 20 N -0.540 5.540 21 C 0.096 3.904 22 C -0.091 4.091 23 C -0.113 4.113 24 C -0.129 4.129 25 C -0.127 4.127 26 C -0.128 4.128 27 C -0.121 4.121 28 C 0.078 3.922 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.045 0.955 32 H -0.011 1.011 33 H -0.015 1.015 34 H 0.262 0.738 35 H 0.023 0.977 36 H 0.053 0.947 37 H 0.345 0.655 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.035 0.965 43 H 0.081 0.919 44 H 0.047 0.953 45 H 0.085 0.915 46 H 0.124 0.876 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.139 0.861 50 H 0.125 0.875 51 H 0.075 0.925 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.798 1.381 -31.561 31.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.095 4.095 3 H 0.075 0.925 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.193 1.193 13 C -0.047 4.047 14 N -0.314 5.314 15 C -0.016 4.016 16 H 0.085 0.915 17 C -0.185 4.185 18 C -0.148 4.148 19 C -0.070 4.070 20 N -0.265 5.265 21 C -0.030 4.030 22 C -0.091 4.091 23 C -0.132 4.132 24 C -0.147 4.147 25 C -0.145 4.145 26 C -0.146 4.146 27 C -0.140 4.140 28 C -0.050 4.050 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.007 0.993 33 H 0.003 0.997 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.164 0.836 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.053 0.947 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.142 0.858 47 H 0.154 0.846 48 H 0.157 0.843 49 H 0.156 0.844 50 H 0.143 0.857 51 H 0.093 0.907 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.756 1.475 -31.271 31.315 hybrid contribution -1.198 -0.244 1.089 1.637 sum -1.954 1.231 -30.182 30.270 Atomic orbital electron populations 1.21637 0.94910 1.00618 1.01096 1.21024 0.96257 0.98992 0.93189 0.92488 1.18995 0.94141 0.94565 0.92738 1.21615 1.34510 1.08564 0.92050 0.92027 1.25974 0.95297 0.96137 1.02710 1.70101 1.40254 1.22960 1.24300 0.85546 0.78931 0.78738 0.78107 1.19161 1.21066 1.19308 1.21799 0.99241 0.94276 0.89347 1.60441 1.20065 1.50002 1.00938 1.21486 0.98016 0.92932 0.89198 0.91497 1.22269 0.99208 0.98874 0.98119 1.21501 1.01563 0.97562 0.94127 1.22169 0.93290 0.93270 0.98220 1.61949 1.44797 1.15743 1.04020 1.21058 1.01513 0.92721 0.87749 1.19811 0.94004 0.99729 0.95600 1.21217 0.96816 0.98187 0.96985 1.21431 1.00080 0.98799 0.94400 1.21468 0.92827 0.99874 1.00359 1.21392 0.97967 0.98458 0.96754 1.21228 0.98582 0.99460 0.94728 1.21865 0.99120 0.95417 0.88583 0.91476 0.94151 0.93597 0.99257 0.99659 0.92970 0.95918 0.92838 0.83566 0.91415 0.92760 0.90302 0.92116 0.94711 0.90082 0.93528 0.89672 0.85757 0.84608 0.84287 0.84362 0.85736 0.90653 0.94469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 8.77 71.98 0.63 -3.92 16 2 C -0.08 -3.13 2.54 -10.79 -0.03 -3.16 16 3 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.03 1.77 4.45 29.85 0.13 1.91 16 5 C -0.53 -30.26 8.41 25.60 0.22 -30.05 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -57.87 13.29 21.44 0.28 -57.59 16 9 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 C 0.08 2.90 4.94 86.30 0.43 3.33 16 14 N -0.68 -19.31 6.25 -491.31 -3.07 -22.38 16 15 C 0.09 2.31 2.63 44.97 0.12 2.43 16 16 H 0.07 1.90 7.80 -2.39 -0.02 1.88 16 17 C -0.15 -3.13 5.25 30.68 0.16 -2.97 16 18 C -0.11 -2.07 6.09 30.65 0.19 -1.88 16 19 C 0.06 1.04 4.58 86.33 0.40 1.44 16 20 N -0.54 -10.63 4.80 -900.96 -4.32 -14.95 16 21 C 0.10 1.63 5.43 85.56 0.46 2.10 16 22 C -0.09 -1.49 4.13 -19.87 -0.08 -1.57 16 23 C -0.11 -1.83 9.70 22.27 0.22 -1.61 16 24 C -0.13 -1.78 10.05 22.27 0.22 -1.56 16 25 C -0.13 -1.58 10.05 22.27 0.22 -1.35 16 26 C -0.13 -1.62 10.05 22.27 0.22 -1.39 16 27 C -0.12 -1.75 7.79 22.27 0.17 -1.58 16 28 C 0.08 1.69 5.03 86.32 0.43 2.13 16 29 H 0.07 1.95 6.68 -2.39 -0.02 1.94 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.04 1.81 6.95 -2.39 -0.02 1.79 16 32 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 33 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 34 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 35 H 0.02 0.80 7.50 -2.38 -0.02 0.78 16 36 H 0.05 2.02 8.06 -2.39 -0.02 2.00 16 37 H 0.34 8.92 6.70 -89.69 -0.60 8.32 16 38 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 39 H 0.05 1.30 7.54 -2.39 -0.02 1.28 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.08 1.46 5.64 -2.39 -0.01 1.45 16 44 H 0.05 0.74 8.02 -2.39 -0.02 0.72 16 45 H 0.08 1.42 8.08 -2.39 -0.02 1.40 16 46 H 0.12 1.89 8.06 -2.91 -0.02 1.87 16 47 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 48 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 49 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 50 H 0.12 1.55 8.06 -2.91 -0.02 1.53 16 51 H 0.07 1.74 8.12 -2.39 -0.02 1.72 16 52 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -64.56 400.53 -0.24 -64.80 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.26 Total: 20.67 kcal Atomic # 6 Polarization: -42.07 SS G_CDS: 4.58 Total: -37.49 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -7.11 Total: -94.92 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -64.56 -0.24 -64.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602562681.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.925 kcal (2) G-P(sol) polarization free energy of solvation -64.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds