Wall clock time and date at job start Tue Mar 31 2020 11:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46618 * 2 1 4 4 C 1.53004 * 109.46678 * 240.00401 * 2 1 3 5 5 C 1.50695 * 109.47384 * 65.00186 * 4 2 1 6 6 H 1.08004 * 120.00169 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99793 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00302 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99631 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47049 * 60.00092 * 9 7 5 11 11 H 1.48505 * 109.46605 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47107 * 299.99709 * 9 7 5 13 13 C 1.52993 * 109.47237 * 120.00219 * 2 1 3 14 14 N 1.46905 * 109.47039 * 295.00079 * 13 2 1 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 2 16 16 H 1.09005 * 110.28798 * 325.69877 * 15 14 13 17 17 C 1.54265 * 110.32150 * 203.57483 * 15 14 13 18 18 C 1.54607 * 104.94542 * 241.12880 * 17 15 14 19 19 H 1.08998 * 110.56413 * 94.92159 * 18 17 15 20 20 C 1.52996 * 110.36281 * 217.31346 * 18 17 15 21 21 N 1.48566 * 104.59704 * 336.06781 * 18 17 15 22 22 C 1.46903 * 110.99832 * 159.09659 * 21 18 17 23 23 C 1.50699 * 109.47207 * 314.45237 * 22 21 18 24 24 C 1.38233 * 120.00583 * 269.73005 * 23 22 21 25 25 C 1.38234 * 119.99877 * 179.79045 * 24 23 22 26 26 C 1.38230 * 120.00211 * 0.43849 * 25 24 23 27 27 C 1.38233 * 120.00032 * 359.81028 * 26 25 24 28 28 C 1.38232 * 119.99820 * 359.97438 * 27 26 25 29 29 C 1.48555 * 104.22098 * 39.54060 * 21 18 17 30 30 H 1.08995 * 109.46725 * 299.99546 * 1 2 3 31 31 H 1.08995 * 109.47462 * 60.00244 * 1 2 3 32 32 H 1.08999 * 109.46618 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46592 * 184.99906 * 4 2 1 34 34 H 1.09003 * 109.47168 * 304.99277 * 4 2 1 35 35 H 0.96996 * 120.00329 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47393 * 175.00360 * 13 2 1 37 37 H 1.08998 * 109.47408 * 55.00006 * 13 2 1 38 38 H 1.00901 * 110.99869 * 56.04956 * 14 13 2 39 39 H 1.08994 * 110.32228 * 359.97438 * 17 15 14 40 40 H 1.08998 * 110.31983 * 122.20898 * 17 15 14 41 41 H 1.09001 * 109.47169 * 175.14571 * 20 18 17 42 42 H 1.08996 * 109.47407 * 295.14342 * 20 18 17 43 43 H 1.08996 * 109.47225 * 55.14990 * 20 18 17 44 44 H 1.08994 * 109.47300 * 74.45737 * 22 21 18 45 45 H 1.08998 * 109.47001 * 194.45558 * 22 21 18 46 46 H 1.08000 * 119.99526 * 359.97438 * 24 23 22 47 47 H 1.08007 * 119.99709 * 180.27474 * 25 24 23 48 48 H 1.08005 * 119.99988 * 179.83764 * 26 25 24 49 49 H 1.08001 * 120.00097 * 179.97438 * 27 26 25 50 50 H 1.08005 * 119.99715 * 179.97438 * 28 27 26 51 51 H 1.09000 * 110.41380 * 201.73812 * 29 21 18 52 52 H 1.09006 * 110.51360 * 79.34437 * 29 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0572 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6772 -1.5181 -3.8512 9 14 1.4984 0.5629 -5.2497 10 1 2.0896 1.9237 -5.1870 11 1 1.9946 -0.1365 -6.4621 12 1 0.0184 0.6684 -5.3092 13 6 2.0401 -0.7213 1.2491 14 7 1.6514 0.0374 2.4456 15 6 2.1259 -0.6266 3.6671 16 1 2.0998 -1.7093 3.5433 17 6 1.2646 -0.2046 4.8753 18 6 2.2506 0.4842 5.8467 19 1 2.2429 1.5640 5.6982 20 6 1.8960 0.1435 7.2955 21 7 3.5793 -0.0780 5.4926 22 6 4.6626 0.7999 5.9550 23 6 4.3360 2.2285 5.6035 24 6 4.7469 2.7538 4.3926 25 6 4.4435 4.0629 4.0686 26 6 3.7372 4.8495 4.9591 27 6 3.3308 4.3259 6.1721 28 6 3.6303 3.0154 6.4944 29 6 3.5572 -0.1604 4.0095 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1263 -0.7994 -1.2057 34 1 1.6054 -1.7198 -1.2953 35 1 2.9244 -1.8410 -4.7318 36 1 3.1264 -0.7994 1.2055 37 1 1.6055 -1.7198 1.2951 38 1 0.6529 0.1792 2.4753 39 1 0.4901 0.4955 4.5621 40 1 0.8173 -1.0803 5.3456 41 1 2.6485 0.5643 7.9624 42 1 0.9197 0.5627 7.5389 43 1 1.8672 -0.9392 7.4175 44 1 4.7694 0.7069 7.0357 45 1 5.5958 0.5111 5.4714 46 1 5.3023 2.1404 3.6986 47 1 4.7607 4.4719 3.1206 48 1 3.5024 5.8731 4.7070 49 1 2.7793 4.9406 6.8681 50 1 3.3131 2.6064 7.4423 51 1 4.2884 -0.8886 3.6582 52 1 3.7540 0.8173 3.5696 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602568273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:53 Heat of formation + Delta-G solvation = 16.752382 kcal Electronic energy + Delta-G solvation = -26971.472436 eV Core-core repulsion = 23548.830911 eV Total energy + Delta-G solvation = -3422.641526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.45229 -38.50853 -36.58000 -34.19974 -32.77854 -31.95112 -31.15031 -30.56525 -29.00412 -26.79278 -26.23457 -25.26369 -24.42130 -22.79631 -22.36632 -21.72965 -20.30027 -19.88639 -18.90188 -16.91611 -16.43935 -16.28646 -15.58974 -15.35588 -15.26056 -15.07802 -14.56119 -14.48588 -13.99830 -13.78768 -13.56548 -13.24451 -13.12428 -12.72047 -12.57090 -12.48304 -12.34933 -12.08091 -11.98460 -11.64143 -11.47006 -11.35992 -11.27258 -11.12551 -11.03203 -10.93868 -10.86996 -10.77843 -10.58383 -10.31790 -10.15887 -9.69734 -9.12934 -9.00946 -8.95595 -8.85768 -8.54719 -8.31529 -8.11968 -5.96273 -3.97495 1.18239 1.26521 3.34997 3.39360 3.41832 3.60381 3.91999 4.45305 4.50267 4.54453 4.62059 4.69125 4.74245 4.86083 4.97301 5.00017 5.14715 5.30941 5.34191 5.39337 5.41549 5.47011 5.50518 5.53845 5.62198 5.72426 5.77742 5.82010 5.83465 5.86263 5.89502 5.91944 6.02313 6.07379 6.10264 6.14719 6.29379 6.30835 6.38182 6.42024 6.49287 6.57900 6.75515 6.85787 6.91904 6.99782 7.12245 7.19211 7.44081 7.68316 7.71736 7.87942 8.04060 8.47939 9.08711 9.65758 11.15227 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.002868 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.045481 B = 9761.270657 C =10674.986598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.064 0.936 4 C 0.029 3.971 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.065 3.935 14 N -0.683 5.683 15 C 0.083 3.917 16 H 0.051 0.949 17 C -0.121 4.121 18 C 0.049 3.951 19 H 0.072 0.928 20 C -0.135 4.135 21 N -0.497 5.497 22 C 0.081 3.919 23 C -0.119 4.119 24 C -0.103 4.103 25 C -0.115 4.115 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.109 4.109 29 C 0.033 3.967 30 H 0.031 0.969 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.014 0.986 34 H 0.014 0.986 35 H 0.260 0.740 36 H 0.065 0.935 37 H 0.024 0.976 38 H 0.339 0.661 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.075 0.925 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.241 7.254 24.403 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.082 0.918 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.063 4.063 14 N -0.316 5.316 15 C -0.028 4.028 16 H 0.069 0.931 17 C -0.159 4.159 18 C -0.059 4.059 19 H 0.089 0.911 20 C -0.193 4.193 21 N -0.219 5.219 22 C -0.047 4.047 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.133 4.133 26 C -0.138 4.138 27 C -0.143 4.143 28 C -0.128 4.128 29 C -0.095 4.095 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.042 0.958 38 H 0.159 0.841 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.140 0.860 47 H 0.141 0.859 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.094 0.906 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.954 6.991 24.492 25.545 hybrid contribution -0.935 0.536 -1.366 1.740 sum 1.019 7.527 23.126 24.341 Atomic orbital electron populations 1.21733 0.96746 1.00400 1.00192 1.21215 0.94808 1.00014 0.94216 0.91771 1.19096 0.96084 0.95331 0.90347 1.21204 1.34671 1.08274 0.91024 0.92658 1.25016 0.95336 0.95088 0.99064 1.69951 1.39007 1.21249 1.23468 0.86700 0.78861 0.80155 0.82529 1.20282 1.21374 1.20312 1.22171 1.00249 0.94371 0.89558 1.60684 1.19399 1.50368 1.01166 1.22171 0.94363 0.96506 0.89784 0.93096 1.22611 0.97572 1.00394 0.95368 1.22864 0.89053 0.98768 0.95189 0.91069 1.21716 1.00522 1.02108 0.94948 1.65752 1.02154 1.43073 1.10948 1.21352 0.95733 0.86218 1.01411 1.20531 0.99182 0.97170 0.95136 1.21127 0.99601 0.95381 0.96039 1.21199 0.98407 0.94261 0.99442 1.21160 0.98432 0.99879 0.94290 1.21112 1.00508 0.95531 0.97138 1.21037 0.98671 0.93912 0.99201 1.23282 0.96997 1.01891 0.87315 0.95031 0.91923 0.94043 0.96721 0.96799 0.93045 0.91616 0.95822 0.84135 0.90917 0.91122 0.92939 0.92551 0.92014 0.89903 0.89983 0.86007 0.85941 0.86255 0.86311 0.86313 0.90635 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.78 37.16 0.33 -2.17 16 2 C -0.08 -1.71 2.55 -90.62 -0.23 -1.95 16 3 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 4 C 0.03 0.74 4.45 -27.88 -0.12 0.62 16 5 C -0.51 -14.44 8.41 -34.44 -0.29 -14.73 16 6 H 0.06 1.51 7.06 -52.48 -0.37 1.14 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.07 1.14 4.99 -3.82 -0.02 1.12 16 14 N -0.68 -10.07 6.28 -105.26 -0.66 -10.73 16 15 C 0.08 1.07 3.38 -66.33 -0.22 0.85 16 16 H 0.05 0.70 7.84 -51.93 -0.41 0.29 16 17 C -0.12 -1.33 6.24 -25.23 -0.16 -1.49 16 18 C 0.05 0.51 2.38 -65.95 -0.16 0.35 16 19 H 0.07 0.81 4.76 -51.93 -0.25 0.56 16 20 C -0.14 -1.15 9.25 37.16 0.34 -0.80 16 21 N -0.50 -5.45 5.33 -223.43 -1.19 -6.64 16 22 C 0.08 0.78 5.57 -4.97 -0.03 0.76 16 23 C -0.12 -1.21 3.84 -104.62 -0.40 -1.62 16 24 C -0.10 -1.14 8.04 -39.58 -0.32 -1.46 16 25 C -0.12 -1.23 10.05 -39.59 -0.40 -1.63 16 26 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 27 C -0.12 -1.16 10.05 -39.59 -0.40 -1.55 16 28 C -0.11 -1.03 7.50 -39.58 -0.30 -1.33 16 29 C 0.03 0.42 6.00 -2.19 -0.01 0.41 16 30 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 31 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 38 H 0.34 4.78 6.34 -39.29 -0.25 4.53 16 39 H 0.07 0.80 7.54 -51.93 -0.39 0.40 16 40 H 0.07 0.72 7.83 -51.93 -0.41 0.32 16 41 H 0.05 0.41 7.08 -51.93 -0.37 0.04 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 44 H 0.08 0.71 7.79 -51.93 -0.40 0.31 16 45 H 0.08 0.77 8.03 -51.93 -0.42 0.35 16 46 H 0.12 1.32 7.53 -52.49 -0.40 0.92 16 47 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 48 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 49 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 50 H 0.12 0.95 7.23 -52.48 -0.38 0.57 16 51 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 52 H 0.07 0.95 5.18 -51.93 -0.27 0.68 16 LS Contribution 396.18 15.07 5.97 5.97 Total: -1.00 -29.90 396.18 -12.26 -42.16 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -9.21 Total: 3.54 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -2.88 Total: -24.69 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: -1.12 Total: -43.75 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.90 -12.26 -42.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602568273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.915 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds