Wall clock time and date at job start Tue Mar 31 2020 11:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46618 * 2 1 4 4 C 1.53004 * 109.46678 * 240.00401 * 2 1 3 5 5 C 1.50695 * 109.47384 * 65.00186 * 4 2 1 6 6 H 1.08004 * 120.00169 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99793 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00302 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99631 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47049 * 60.00092 * 9 7 5 11 11 H 1.48505 * 109.46605 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47107 * 299.99709 * 9 7 5 13 13 C 1.52993 * 109.47237 * 120.00219 * 2 1 3 14 14 N 1.46905 * 109.47039 * 295.00079 * 13 2 1 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 2 16 16 H 1.09005 * 110.28798 * 325.69877 * 15 14 13 17 17 C 1.54265 * 110.32150 * 203.57483 * 15 14 13 18 18 C 1.54607 * 104.94542 * 241.12880 * 17 15 14 19 19 H 1.08998 * 110.56413 * 94.92159 * 18 17 15 20 20 C 1.52996 * 110.36281 * 217.31346 * 18 17 15 21 21 N 1.48566 * 104.59704 * 336.06781 * 18 17 15 22 22 C 1.46903 * 110.99832 * 159.09659 * 21 18 17 23 23 C 1.50699 * 109.47207 * 314.45237 * 22 21 18 24 24 C 1.38233 * 120.00583 * 269.73005 * 23 22 21 25 25 C 1.38234 * 119.99877 * 179.79045 * 24 23 22 26 26 C 1.38230 * 120.00211 * 0.43849 * 25 24 23 27 27 C 1.38233 * 120.00032 * 359.81028 * 26 25 24 28 28 C 1.38232 * 119.99820 * 359.97438 * 27 26 25 29 29 C 1.48555 * 104.22098 * 39.54060 * 21 18 17 30 30 H 1.08995 * 109.46725 * 299.99546 * 1 2 3 31 31 H 1.08995 * 109.47462 * 60.00244 * 1 2 3 32 32 H 1.08999 * 109.46618 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46592 * 184.99906 * 4 2 1 34 34 H 1.09003 * 109.47168 * 304.99277 * 4 2 1 35 35 H 0.96996 * 120.00329 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47393 * 175.00360 * 13 2 1 37 37 H 1.08998 * 109.47408 * 55.00006 * 13 2 1 38 38 H 1.00901 * 110.99869 * 56.04956 * 14 13 2 39 39 H 1.08994 * 110.32228 * 359.97438 * 17 15 14 40 40 H 1.08998 * 110.31983 * 122.20898 * 17 15 14 41 41 H 1.09001 * 109.47169 * 175.14571 * 20 18 17 42 42 H 1.08996 * 109.47407 * 295.14342 * 20 18 17 43 43 H 1.08996 * 109.47225 * 55.14990 * 20 18 17 44 44 H 1.08994 * 109.47300 * 74.45737 * 22 21 18 45 45 H 1.08998 * 109.47001 * 194.45558 * 22 21 18 46 46 H 1.08000 * 119.99526 * 359.97438 * 24 23 22 47 47 H 1.08007 * 119.99709 * 180.27474 * 25 24 23 48 48 H 1.08005 * 119.99988 * 179.83764 * 26 25 24 49 49 H 1.08001 * 120.00097 * 179.97438 * 27 26 25 50 50 H 1.08005 * 119.99715 * 179.97438 * 28 27 26 51 51 H 1.09000 * 110.41380 * 201.73812 * 29 21 18 52 52 H 1.09006 * 110.51360 * 79.34437 * 29 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0572 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6772 -1.5181 -3.8512 9 14 1.4984 0.5629 -5.2497 10 1 2.0896 1.9237 -5.1870 11 1 1.9946 -0.1365 -6.4621 12 1 0.0184 0.6684 -5.3092 13 6 2.0401 -0.7213 1.2491 14 7 1.6514 0.0374 2.4456 15 6 2.1259 -0.6266 3.6671 16 1 2.0998 -1.7093 3.5433 17 6 1.2646 -0.2046 4.8753 18 6 2.2506 0.4842 5.8467 19 1 2.2429 1.5640 5.6982 20 6 1.8960 0.1435 7.2955 21 7 3.5793 -0.0780 5.4926 22 6 4.6626 0.7999 5.9550 23 6 4.3360 2.2285 5.6035 24 6 4.7469 2.7538 4.3926 25 6 4.4435 4.0629 4.0686 26 6 3.7372 4.8495 4.9591 27 6 3.3308 4.3259 6.1721 28 6 3.6303 3.0154 6.4944 29 6 3.5572 -0.1604 4.0095 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1263 -0.7994 -1.2057 34 1 1.6054 -1.7198 -1.2953 35 1 2.9244 -1.8410 -4.7318 36 1 3.1264 -0.7994 1.2055 37 1 1.6055 -1.7198 1.2951 38 1 0.6529 0.1792 2.4753 39 1 0.4901 0.4955 4.5621 40 1 0.8173 -1.0803 5.3456 41 1 2.6485 0.5643 7.9624 42 1 0.9197 0.5627 7.5389 43 1 1.8672 -0.9392 7.4175 44 1 4.7694 0.7069 7.0357 45 1 5.5958 0.5111 5.4714 46 1 5.3023 2.1404 3.6986 47 1 4.7607 4.4719 3.1206 48 1 3.5024 5.8731 4.7070 49 1 2.7793 4.9406 6.8681 50 1 3.3131 2.6064 7.4423 51 1 4.2884 -0.8886 3.6582 52 1 3.7540 0.8173 3.5696 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602568273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:52 Heat of formation + Delta-G solvation = -0.196982 kcal Electronic energy + Delta-G solvation = -26972.207416 eV Core-core repulsion = 23548.830911 eV Total energy + Delta-G solvation = -3423.376505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.28472 -39.41838 -38.00364 -35.66756 -34.25161 -33.25057 -32.03833 -31.37317 -30.15636 -28.65682 -27.21556 -26.58067 -25.47345 -24.19437 -23.52739 -22.54758 -21.34861 -20.79093 -20.51057 -18.53443 -17.65649 -17.28266 -16.62217 -16.51704 -16.45050 -16.15272 -15.95763 -15.48941 -15.30711 -14.92486 -14.51625 -14.44985 -14.30094 -13.92680 -13.79029 -13.62194 -13.32731 -13.29788 -13.25481 -12.89773 -12.78135 -12.71590 -12.51247 -12.32175 -12.21586 -12.08370 -12.04307 -11.91127 -11.86677 -11.74737 -11.58076 -11.44801 -11.07382 -10.89157 -10.53572 -9.77774 -9.62414 -9.44335 -9.34132 -8.17745 -6.27181 0.42568 0.50446 1.39459 1.42358 1.50011 2.41549 2.81307 3.01504 3.15503 3.41974 3.64612 3.69257 3.90164 3.97088 4.14184 4.14960 4.18719 4.25196 4.27509 4.36726 4.42016 4.46120 4.57412 4.63051 4.63273 4.73754 4.74812 4.76233 4.81858 4.88439 4.93866 4.97544 5.01942 5.05811 5.09130 5.11430 5.15360 5.21735 5.24081 5.37634 5.43971 5.47439 5.54065 5.57120 5.62091 5.65048 5.79310 5.87045 5.89301 6.07694 6.12280 6.15558 6.31227 6.52055 6.88617 7.41086 8.94205 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.002868 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.045481 B = 9761.270657 C =10674.986598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 H 0.054 0.946 4 C 0.035 3.965 5 C -0.530 4.530 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.080 3.920 14 N -0.680 5.680 15 C 0.081 3.919 16 H 0.044 0.956 17 C -0.117 4.117 18 C 0.051 3.949 19 H 0.064 0.936 20 C -0.130 4.130 21 N -0.497 5.497 22 C 0.082 3.918 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.133 4.133 26 C -0.127 4.127 27 C -0.127 4.127 28 C -0.110 4.110 29 C 0.035 3.965 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.040 0.960 33 H -0.016 1.016 34 H -0.011 1.011 35 H 0.262 0.738 36 H 0.052 0.948 37 H 0.022 0.978 38 H 0.346 0.654 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.123 0.877 48 H 0.136 0.864 49 H 0.143 0.857 50 H 0.137 0.863 51 H 0.066 0.934 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.266 8.659 26.250 27.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.003 4.003 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.191 1.191 13 C -0.049 4.049 14 N -0.313 5.313 15 C -0.030 4.030 16 H 0.062 0.938 17 C -0.155 4.155 18 C -0.057 4.057 19 H 0.082 0.918 20 C -0.188 4.188 21 N -0.219 5.219 22 C -0.046 4.046 23 C -0.125 4.125 24 C -0.140 4.140 25 C -0.151 4.151 26 C -0.145 4.145 27 C -0.145 4.145 28 C -0.129 4.129 29 C -0.093 4.093 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.003 0.997 34 H 0.007 0.993 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.166 0.834 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.118 0.882 45 H 0.097 0.903 46 H 0.130 0.870 47 H 0.142 0.858 48 H 0.154 0.846 49 H 0.161 0.839 50 H 0.155 0.845 51 H 0.084 0.916 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.439 8.408 26.361 27.673 hybrid contribution -0.425 0.095 -1.900 1.949 sum 0.014 8.503 24.461 25.897 Atomic orbital electron populations 1.21636 0.94898 1.00658 1.01072 1.21002 0.96255 0.98822 0.93205 0.92737 1.18982 0.94076 0.94539 0.92706 1.21611 1.34542 1.08595 0.92078 0.92100 1.25956 0.95230 0.96089 1.02656 1.70093 1.40212 1.22989 1.24349 0.85567 0.78991 0.78759 0.78149 1.19309 1.21007 1.19099 1.21840 0.99304 0.94121 0.89615 1.60604 1.19905 1.49995 1.00805 1.22212 0.95092 0.95947 0.89721 0.93814 1.22615 0.97466 1.01005 0.94444 1.22888 0.88295 0.98170 0.96309 0.91792 1.21686 1.01539 1.02084 0.93467 1.65782 1.03012 1.43728 1.09412 1.21395 0.95173 0.85809 1.02233 1.20588 0.99435 0.97466 0.94993 1.21190 1.00436 0.95733 0.96652 1.21363 0.99228 0.94482 1.00075 1.21426 0.98038 1.00628 0.94408 1.21443 1.00093 0.95758 0.97208 1.21270 0.98013 0.93977 0.99602 1.23173 0.96566 1.00865 0.88730 0.91513 0.93607 0.94076 0.99724 0.99268 0.92927 0.92913 0.95984 0.83375 0.90506 0.90007 0.91979 0.91246 0.92281 0.88242 0.90303 0.86980 0.85849 0.84614 0.83920 0.84487 0.91601 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 8.78 71.99 0.63 -3.96 16 2 C -0.07 -3.07 2.55 -10.79 -0.03 -3.10 16 3 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.03 1.85 4.45 29.85 0.13 1.98 16 5 C -0.53 -30.37 8.41 25.60 0.22 -30.15 16 6 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 7 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 8 N -0.94 -57.90 13.29 21.45 0.28 -57.62 16 9 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 13 C 0.08 2.85 4.99 86.30 0.43 3.28 16 14 N -0.68 -19.57 6.28 -486.94 -3.06 -22.63 16 15 C 0.08 2.04 3.38 45.81 0.15 2.19 16 16 H 0.04 1.18 7.84 -2.38 -0.02 1.16 16 17 C -0.12 -2.34 6.24 31.57 0.20 -2.15 16 18 C 0.05 0.95 2.38 45.14 0.11 1.06 16 19 H 0.06 1.31 4.76 -2.39 -0.01 1.30 16 20 C -0.13 -1.81 9.25 71.98 0.67 -1.14 16 21 N -0.50 -10.33 5.33 -860.79 -4.59 -14.92 16 22 C 0.08 1.49 5.57 85.56 0.48 1.97 16 23 C -0.12 -2.41 3.84 -19.87 -0.08 -2.48 16 24 C -0.12 -2.73 8.04 22.27 0.18 -2.55 16 25 C -0.13 -2.87 10.05 22.27 0.22 -2.64 16 26 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 27 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 28 C -0.11 -1.84 7.50 22.27 0.17 -1.67 16 29 C 0.04 0.89 6.00 86.45 0.52 1.41 16 30 H 0.07 1.97 6.68 -2.39 -0.02 1.95 16 31 H 0.04 1.82 6.95 -2.39 -0.02 1.80 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 34 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 37 H 0.02 0.79 8.07 -2.39 -0.02 0.77 16 38 H 0.35 9.11 6.34 -89.69 -0.57 8.54 16 39 H 0.08 1.49 7.54 -2.39 -0.02 1.47 16 40 H 0.08 1.47 7.83 -2.39 -0.02 1.45 16 41 H 0.06 0.75 7.08 -2.39 -0.02 0.73 16 42 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.06 0.87 8.09 -2.39 -0.02 0.85 16 44 H 0.10 1.49 7.79 -2.39 -0.02 1.47 16 45 H 0.08 1.47 8.03 -2.39 -0.02 1.45 16 46 H 0.11 2.61 7.53 -2.91 -0.02 2.59 16 47 H 0.12 2.47 8.06 -2.91 -0.02 2.45 16 48 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 49 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 50 H 0.14 1.74 7.23 -2.91 -0.02 1.72 16 51 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 52 H 0.06 1.59 5.18 -2.38 -0.01 1.58 16 Total: -1.00 -65.24 396.18 -0.12 -65.36 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.31 Total: 24.46 kcal Atomic # 6 Polarization: -46.45 SS G_CDS: 4.91 Total: -41.54 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -7.36 Total: -95.17 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -65.24 -0.12 -65.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602568273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.166 kcal (2) G-P(sol) polarization free energy of solvation -65.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds