Wall clock time and date at job start Tue Mar 31 2020 11:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 H 1.07996 * 119.99521 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00003 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00392 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47090 * 59.99390 * 9 7 5 11 11 H 1.48494 * 109.47443 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46898 * 299.99772 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 N 1.46895 * 109.46799 * 294.99463 * 13 2 1 15 15 C 1.46907 * 111.00034 * 179.97438 * 14 13 2 16 16 H 1.08992 * 110.62445 * 34.30043 * 15 14 13 17 17 C 1.55138 * 110.70661 * 157.40834 * 15 14 13 18 18 C 1.55113 * 101.55971 * 153.90849 * 17 15 14 19 19 H 1.08998 * 110.31092 * 82.01727 * 18 17 15 20 20 C 1.52998 * 110.42683 * 204.24037 * 18 17 15 21 21 N 1.47851 * 104.90454 * 323.15518 * 18 17 15 22 22 C 1.46894 * 110.99675 * 146.23774 * 21 18 17 23 23 C 1.50697 * 109.47922 * 309.03396 * 22 21 18 24 24 C 1.38233 * 119.99938 * 269.73367 * 23 22 21 25 25 C 1.38236 * 120.00011 * 179.80472 * 24 23 22 26 26 C 1.38235 * 120.00078 * 0.39266 * 25 24 23 27 27 C 1.38233 * 119.99585 * 359.85913 * 26 25 24 28 28 C 1.38232 * 120.00397 * 359.95203 * 27 26 25 29 29 C 1.47439 * 108.56314 * 23.97499 * 21 18 17 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 34 34 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 35 35 H 0.96995 * 120.00234 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47326 * 54.99931 * 13 2 1 37 37 H 1.09000 * 109.46904 * 175.00284 * 13 2 1 38 38 H 1.00900 * 111.00812 * 303.95845 * 14 13 2 39 39 H 1.09004 * 110.99006 * 272.13345 * 17 15 14 40 40 H 1.09006 * 110.99234 * 35.94249 * 17 15 14 41 41 H 1.08996 * 109.47603 * 175.53383 * 20 18 17 42 42 H 1.09004 * 109.46946 * 295.53575 * 20 18 17 43 43 H 1.09001 * 109.47096 * 55.53598 * 20 18 17 44 44 H 1.09008 * 109.47151 * 69.03371 * 22 21 18 45 45 H 1.09009 * 109.47032 * 189.03317 * 22 21 18 46 46 H 1.08003 * 119.99998 * 359.97438 * 24 23 22 47 47 H 1.08000 * 120.00570 * 180.22378 * 25 24 23 48 48 H 1.07993 * 120.00394 * 179.82998 * 26 25 24 49 49 H 1.08008 * 120.00188 * 179.97438 * 27 26 25 50 50 H 1.08003 * 120.00204 * 180.02562 * 28 27 26 51 51 H 1.09005 * 109.88693 * 239.60053 * 29 21 18 52 52 H 1.08999 * 109.89282 * 118.41831 * 29 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8512 9 14 1.4989 0.5628 -5.2497 10 1 2.0920 1.9228 -5.1871 11 1 1.9938 -0.1373 -6.4621 12 1 0.0190 0.6704 -5.3090 13 6 2.0400 -0.7213 1.2493 14 7 1.6515 0.0374 2.4456 15 6 2.1248 -0.6271 3.6673 16 1 3.0828 -1.1164 3.4916 17 6 2.2327 0.3867 4.8366 18 6 2.0567 -0.5395 6.0683 19 1 3.0016 -1.0230 6.3163 20 6 1.5370 0.2579 7.2661 21 7 1.0584 -1.5458 5.6478 22 6 1.3341 -2.8503 6.2642 23 6 2.7762 -3.2211 6.0319 24 6 3.1319 -3.9425 4.9077 25 6 4.4553 -4.2792 4.6925 26 6 5.4218 -3.9014 5.6057 27 6 5.0654 -3.1844 6.7326 28 6 3.7426 -2.8444 6.9457 29 6 1.0794 -1.6415 4.1766 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1263 -0.7996 -1.2055 34 1 1.6054 -1.7198 -1.2952 35 1 2.9228 -1.8423 -4.7318 36 1 1.6054 -1.7199 1.2952 37 1 3.1263 -0.7995 1.2056 38 1 1.9882 0.9873 2.3967 39 1 3.2094 0.8707 4.8448 40 1 1.4329 1.1257 4.7877 41 1 1.3438 -0.4198 8.0976 42 1 2.2834 0.9945 7.5636 43 1 0.6136 0.7673 6.9905 44 1 1.1416 -2.7939 7.3356 45 1 0.6882 -3.6067 5.8182 46 1 2.3762 -4.2408 4.1960 47 1 4.7338 -4.8397 3.8124 48 1 6.4553 -4.1667 5.4391 49 1 5.8204 -2.8895 7.4463 50 1 3.4641 -2.2839 7.8259 51 1 0.0966 -1.3946 3.7749 52 1 1.3631 -2.6497 3.8746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602568275.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:55 Heat of formation + Delta-G solvation = 16.239144 kcal Electronic energy + Delta-G solvation = -26954.428935 eV Core-core repulsion = 23531.765153 eV Total energy + Delta-G solvation = -3422.663781 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.51828 -38.52921 -36.52300 -34.17133 -32.84355 -31.96098 -31.23210 -30.59995 -29.08396 -26.74880 -26.19205 -25.25298 -24.37369 -22.86190 -22.43450 -21.61193 -20.69440 -19.64573 -18.97658 -16.96346 -16.76630 -16.28279 -15.81994 -15.35465 -15.18744 -14.58627 -14.42109 -14.37909 -14.23729 -13.76608 -13.69219 -13.35206 -13.29396 -12.76139 -12.63617 -12.51355 -12.25867 -12.18926 -11.79372 -11.60003 -11.44797 -11.42234 -11.37423 -11.15833 -11.06669 -10.93402 -10.82837 -10.70523 -10.60617 -10.26728 -10.18522 -9.68520 -9.12886 -9.12179 -8.97223 -8.93475 -8.44966 -8.31360 -8.08129 -5.96329 -3.97430 1.10169 1.16853 3.35291 3.39507 3.42167 3.52098 3.88198 4.33410 4.47169 4.50303 4.58659 4.65008 4.70477 4.78482 4.89519 5.05145 5.13720 5.23042 5.26941 5.37609 5.39220 5.40150 5.43079 5.53171 5.61288 5.67346 5.72737 5.76713 5.78726 5.82340 5.84343 5.91166 6.02149 6.16941 6.18032 6.22120 6.23973 6.30958 6.34793 6.45345 6.58291 6.72014 6.77252 6.89731 6.96463 7.04635 7.21009 7.22788 7.41241 7.66308 7.71499 7.87078 8.03950 8.48076 9.08785 9.65838 11.15222 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016992 B = 0.002759 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.425770 B =10146.403149 C =11169.646864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.065 3.935 14 N -0.675 5.675 15 C 0.069 3.931 16 H 0.045 0.955 17 C -0.126 4.126 18 C 0.053 3.947 19 H 0.072 0.928 20 C -0.133 4.133 21 N -0.510 5.510 22 C 0.085 3.915 23 C -0.118 4.118 24 C -0.108 4.108 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.123 4.123 28 C -0.111 4.111 29 C 0.049 3.951 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.039 0.961 33 H 0.011 0.989 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.064 0.936 37 H 0.022 0.978 38 H 0.339 0.661 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.120 0.880 49 H 0.120 0.880 50 H 0.120 0.880 51 H 0.091 0.909 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.126 -2.505 25.406 25.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.063 4.063 14 N -0.306 5.306 15 C -0.042 4.042 16 H 0.063 0.937 17 C -0.165 4.165 18 C -0.055 4.055 19 H 0.089 0.911 20 C -0.190 4.190 21 N -0.232 5.232 22 C -0.043 4.043 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.136 4.136 26 C -0.139 4.139 27 C -0.141 4.141 28 C -0.129 4.129 29 C -0.079 4.079 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.030 0.970 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.157 0.843 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.140 0.860 47 H 0.141 0.859 48 H 0.138 0.862 49 H 0.138 0.862 50 H 0.138 0.862 51 H 0.109 0.891 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.040 -2.746 25.466 25.634 hybrid contribution 1.735 0.255 -1.363 2.221 sum 2.776 -2.490 24.103 24.390 Atomic orbital electron populations 1.21579 0.95653 1.00535 1.00151 1.21197 0.96045 0.98858 0.94006 0.92890 1.19108 0.95816 0.95554 0.90465 1.21207 1.34598 1.08283 0.91001 0.92614 1.25020 0.95349 0.95096 0.99082 1.69957 1.39097 1.21248 1.23456 0.86690 0.78925 0.80095 0.82485 1.20326 1.21386 1.20242 1.22184 0.96921 0.97692 0.89536 1.60542 1.63584 1.05526 1.00980 1.22664 0.95923 0.95098 0.90514 0.93664 1.22956 1.02066 0.97865 0.93564 1.22847 0.94719 0.92626 0.95345 0.91067 1.21669 1.01310 0.99253 0.96803 1.63963 1.46628 1.05323 1.07269 1.21428 0.90270 0.91736 1.00873 1.20650 0.97627 0.98355 0.95397 1.21166 0.96515 0.98017 0.96932 1.21228 0.93155 0.99896 0.99284 1.21175 0.99448 0.98587 0.94661 1.21141 0.96201 0.98940 0.97859 1.21026 0.92996 0.99849 0.99057 1.22942 1.00695 0.98099 0.86200 0.92834 0.93876 0.94220 0.97049 0.96612 0.93066 0.91711 0.95986 0.84305 0.91409 0.89723 0.92911 0.92703 0.91926 0.89951 0.89888 0.86005 0.85918 0.86176 0.86202 0.86164 0.89054 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 2 C -0.08 -1.69 2.48 -90.62 -0.22 -1.91 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.47 8.41 -34.44 -0.29 -14.76 16 6 H 0.06 1.53 7.05 -52.49 -0.37 1.16 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.07 1.14 4.94 -3.82 -0.02 1.12 16 14 N -0.68 -9.82 5.76 -104.80 -0.60 -10.42 16 15 C 0.07 0.89 3.25 -65.89 -0.21 0.67 16 16 H 0.05 0.64 7.86 -51.93 -0.41 0.24 16 17 C -0.13 -1.37 5.93 -24.48 -0.15 -1.52 16 18 C 0.05 0.52 2.77 -66.07 -0.18 0.34 16 19 H 0.07 0.72 4.14 -51.93 -0.21 0.51 16 20 C -0.13 -1.12 9.59 37.16 0.36 -0.77 16 21 N -0.51 -5.48 5.07 -224.68 -1.14 -6.62 16 22 C 0.08 0.79 5.52 -4.98 -0.03 0.77 16 23 C -0.12 -1.16 4.21 -104.63 -0.44 -1.60 16 24 C -0.11 -1.13 8.63 -39.58 -0.34 -1.47 16 25 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 26 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 27 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16 28 C -0.11 -1.00 7.42 -39.58 -0.29 -1.29 16 29 C 0.05 0.60 6.14 -2.84 -0.02 0.58 16 30 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 31 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 38 H 0.34 4.72 8.46 -39.29 -0.33 4.38 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 44 H 0.08 0.68 8.09 -51.92 -0.42 0.26 16 45 H 0.08 0.76 7.98 -51.92 -0.41 0.34 16 46 H 0.12 1.24 6.90 -52.48 -0.36 0.88 16 47 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 48 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 49 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 50 H 0.12 0.91 7.85 -52.48 -0.41 0.50 16 51 H 0.09 1.28 8.03 -51.93 -0.42 0.86 16 52 H 0.05 0.66 5.20 -51.93 -0.27 0.39 16 LS Contribution 401.33 15.07 6.05 6.05 Total: -1.00 -29.96 401.33 -12.33 -42.29 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -9.43 Total: 2.72 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -2.92 Total: -24.42 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -1.01 Total: -43.48 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.96 -12.33 -42.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602568275.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.533 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds