Wall clock time and date at job start Tue Mar 31 2020 11:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 H 1.07996 * 119.99521 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00003 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00392 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47090 * 59.99390 * 9 7 5 11 11 H 1.48494 * 109.47443 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46898 * 299.99772 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 N 1.46895 * 109.46799 * 294.99463 * 13 2 1 15 15 C 1.46907 * 111.00034 * 179.97438 * 14 13 2 16 16 H 1.08992 * 110.62445 * 34.30043 * 15 14 13 17 17 C 1.55138 * 110.70661 * 157.40834 * 15 14 13 18 18 C 1.55113 * 101.55971 * 153.90849 * 17 15 14 19 19 H 1.08998 * 110.31092 * 82.01727 * 18 17 15 20 20 C 1.52998 * 110.42683 * 204.24037 * 18 17 15 21 21 N 1.47851 * 104.90454 * 323.15518 * 18 17 15 22 22 C 1.46894 * 110.99675 * 146.23774 * 21 18 17 23 23 C 1.50697 * 109.47922 * 309.03396 * 22 21 18 24 24 C 1.38233 * 119.99938 * 269.73367 * 23 22 21 25 25 C 1.38236 * 120.00011 * 179.80472 * 24 23 22 26 26 C 1.38235 * 120.00078 * 0.39266 * 25 24 23 27 27 C 1.38233 * 119.99585 * 359.85913 * 26 25 24 28 28 C 1.38232 * 120.00397 * 359.95203 * 27 26 25 29 29 C 1.47439 * 108.56314 * 23.97499 * 21 18 17 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 34 34 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 35 35 H 0.96995 * 120.00234 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47326 * 54.99931 * 13 2 1 37 37 H 1.09000 * 109.46904 * 175.00284 * 13 2 1 38 38 H 1.00900 * 111.00812 * 303.95845 * 14 13 2 39 39 H 1.09004 * 110.99006 * 272.13345 * 17 15 14 40 40 H 1.09006 * 110.99234 * 35.94249 * 17 15 14 41 41 H 1.08996 * 109.47603 * 175.53383 * 20 18 17 42 42 H 1.09004 * 109.46946 * 295.53575 * 20 18 17 43 43 H 1.09001 * 109.47096 * 55.53598 * 20 18 17 44 44 H 1.09008 * 109.47151 * 69.03371 * 22 21 18 45 45 H 1.09009 * 109.47032 * 189.03317 * 22 21 18 46 46 H 1.08003 * 119.99998 * 359.97438 * 24 23 22 47 47 H 1.08000 * 120.00570 * 180.22378 * 25 24 23 48 48 H 1.07993 * 120.00394 * 179.82998 * 26 25 24 49 49 H 1.08008 * 120.00188 * 179.97438 * 27 26 25 50 50 H 1.08003 * 120.00204 * 180.02562 * 28 27 26 51 51 H 1.09005 * 109.88693 * 239.60053 * 29 21 18 52 52 H 1.08999 * 109.89282 * 118.41831 * 29 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8512 9 14 1.4989 0.5628 -5.2497 10 1 2.0920 1.9228 -5.1871 11 1 1.9938 -0.1373 -6.4621 12 1 0.0190 0.6704 -5.3090 13 6 2.0400 -0.7213 1.2493 14 7 1.6515 0.0374 2.4456 15 6 2.1248 -0.6271 3.6673 16 1 3.0828 -1.1164 3.4916 17 6 2.2327 0.3867 4.8366 18 6 2.0567 -0.5395 6.0683 19 1 3.0016 -1.0230 6.3163 20 6 1.5370 0.2579 7.2661 21 7 1.0584 -1.5458 5.6478 22 6 1.3341 -2.8503 6.2642 23 6 2.7762 -3.2211 6.0319 24 6 3.1319 -3.9425 4.9077 25 6 4.4553 -4.2792 4.6925 26 6 5.4218 -3.9014 5.6057 27 6 5.0654 -3.1844 6.7326 28 6 3.7426 -2.8444 6.9457 29 6 1.0794 -1.6415 4.1766 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1263 -0.7996 -1.2055 34 1 1.6054 -1.7198 -1.2952 35 1 2.9228 -1.8423 -4.7318 36 1 1.6054 -1.7199 1.2952 37 1 3.1263 -0.7995 1.2056 38 1 1.9882 0.9873 2.3967 39 1 3.2094 0.8707 4.8448 40 1 1.4329 1.1257 4.7877 41 1 1.3438 -0.4198 8.0976 42 1 2.2834 0.9945 7.5636 43 1 0.6136 0.7673 6.9905 44 1 1.1416 -2.7939 7.3356 45 1 0.6882 -3.6067 5.8182 46 1 2.3762 -4.2408 4.1960 47 1 4.7338 -4.8397 3.8124 48 1 6.4553 -4.1667 5.4391 49 1 5.8204 -2.8895 7.4463 50 1 3.4641 -2.2839 7.8259 51 1 0.0966 -1.3946 3.7749 52 1 1.3631 -2.6497 3.8746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602568275.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:54 Heat of formation + Delta-G solvation = -0.294545 kcal Electronic energy + Delta-G solvation = -26955.145889 eV Core-core repulsion = 23531.765153 eV Total energy + Delta-G solvation = -3423.380736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.33069 -39.40335 -37.97443 -35.65581 -34.22889 -33.34054 -32.06741 -31.39275 -30.22189 -28.67295 -27.07772 -26.60151 -25.46473 -24.25304 -23.58303 -22.38461 -21.71234 -20.72622 -20.45304 -18.49591 -17.76329 -17.55637 -16.80781 -16.50899 -16.14247 -16.07256 -15.74778 -15.67648 -15.22951 -14.85163 -14.65207 -14.45076 -14.25424 -14.08333 -13.88708 -13.49909 -13.37797 -13.29373 -13.15826 -12.94459 -12.82003 -12.70929 -12.60566 -12.28058 -12.19634 -12.15690 -12.11086 -11.94630 -11.79200 -11.73299 -11.54326 -11.49202 -11.09586 -10.87630 -10.53761 -9.86752 -9.69877 -9.47307 -9.17318 -8.18049 -6.27460 0.37150 0.43692 1.39643 1.42562 1.50202 2.41557 2.77072 3.01244 3.15247 3.25020 3.57938 3.79555 3.84491 3.91545 4.09101 4.11650 4.16306 4.22680 4.30037 4.32917 4.35804 4.48973 4.55230 4.55956 4.61712 4.69361 4.73677 4.81554 4.85753 4.89459 4.92485 5.00677 5.01813 5.04769 5.08241 5.10437 5.17413 5.22175 5.28815 5.45861 5.46523 5.50244 5.52826 5.55613 5.58119 5.60112 5.80011 5.87605 6.03271 6.06637 6.08587 6.14812 6.30407 6.48047 6.88314 7.40882 8.93946 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016992 B = 0.002759 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.425770 B =10146.403149 C =11169.646864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.073 4.073 3 H 0.055 0.945 4 C 0.034 3.966 5 C -0.530 4.530 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.082 3.918 14 N -0.669 5.669 15 C 0.071 3.929 16 H 0.031 0.969 17 C -0.121 4.121 18 C 0.054 3.946 19 H 0.074 0.926 20 C -0.128 4.128 21 N -0.512 5.512 22 C 0.086 3.914 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.136 4.136 26 C -0.129 4.129 27 C -0.126 4.126 28 C -0.112 4.112 29 C 0.054 3.946 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.033 0.967 33 H -0.016 1.016 34 H -0.012 1.012 35 H 0.262 0.738 36 H 0.057 0.943 37 H 0.012 0.988 38 H 0.345 0.655 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.099 0.901 45 H 0.080 0.920 46 H 0.114 0.886 47 H 0.123 0.877 48 H 0.135 0.865 49 H 0.144 0.856 50 H 0.140 0.860 51 H 0.075 0.925 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.935 -0.955 27.171 27.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 H 0.073 0.927 4 C -0.004 4.004 5 C -0.568 4.568 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.047 4.047 14 N -0.301 5.301 15 C -0.040 4.040 16 H 0.049 0.951 17 C -0.159 4.159 18 C -0.053 4.053 19 H 0.091 0.909 20 C -0.185 4.185 21 N -0.234 5.234 22 C -0.042 4.042 23 C -0.125 4.125 24 C -0.143 4.143 25 C -0.154 4.154 26 C -0.147 4.147 27 C -0.144 4.144 28 C -0.130 4.130 29 C -0.075 4.075 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.002 0.998 34 H 0.007 0.993 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.030 0.970 38 H 0.164 0.836 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.117 0.883 45 H 0.099 0.901 46 H 0.132 0.868 47 H 0.141 0.859 48 H 0.153 0.847 49 H 0.161 0.839 50 H 0.157 0.843 51 H 0.093 0.907 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.842 -1.184 27.254 27.292 hybrid contribution 1.831 -0.273 -1.868 2.630 sum 2.673 -1.457 25.386 25.568 Atomic orbital electron populations 1.21468 0.94543 1.00289 1.00556 1.21008 0.96796 0.98392 0.92986 0.92681 1.18995 0.93915 0.94647 0.92822 1.21614 1.34484 1.08630 0.92040 0.92002 1.25964 0.95238 0.96097 1.02687 1.70099 1.40289 1.22978 1.24343 0.85556 0.78971 0.78782 0.78099 1.19180 1.21025 1.19189 1.21840 0.96002 0.97252 0.89646 1.60473 1.63510 1.05646 1.00448 1.22656 0.95276 0.95784 0.90302 0.95067 1.22948 1.02609 0.97473 0.92875 1.22901 0.94723 0.92254 0.95462 0.90879 1.21637 1.01271 0.99424 0.96193 1.63984 1.47175 1.06279 1.05970 1.21466 0.90087 0.91002 1.01601 1.20709 0.98044 0.98414 0.95355 1.21238 0.96624 0.98972 0.97509 1.21394 0.93495 1.00580 0.99937 1.21439 1.00046 0.98523 0.94700 1.21464 0.96794 0.98192 0.97906 1.21273 0.92899 0.99561 0.99316 1.22797 0.99460 0.97653 0.87571 0.94316 0.91386 0.94802 0.99812 0.99347 0.92943 0.92479 0.96997 0.83578 0.90468 0.89721 0.91977 0.91323 0.92678 0.88297 0.90132 0.86758 0.85859 0.84665 0.83865 0.84262 0.90682 0.93304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 8.89 71.98 0.64 -3.68 16 2 C -0.07 -3.03 2.48 -10.79 -0.03 -3.06 16 3 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 4 C 0.03 1.81 4.45 29.85 0.13 1.94 16 5 C -0.53 -30.33 8.41 25.60 0.22 -30.12 16 6 H 0.06 3.39 7.05 -2.91 -0.02 3.37 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 8 N -0.94 -57.96 13.29 21.45 0.28 -57.67 16 9 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 C 0.08 2.90 4.94 86.31 0.43 3.33 16 14 N -0.67 -19.06 5.76 -485.49 -2.80 -21.85 16 15 C 0.07 1.77 3.25 46.09 0.15 1.92 16 16 H 0.03 0.89 7.86 -2.39 -0.02 0.87 16 17 C -0.12 -2.41 5.93 32.05 0.19 -2.22 16 18 C 0.05 0.97 2.77 45.46 0.13 1.09 16 19 H 0.07 1.30 4.14 -2.39 -0.01 1.29 16 20 C -0.13 -1.80 9.59 71.98 0.69 -1.11 16 21 N -0.51 -10.34 5.07 -864.75 -4.38 -14.72 16 22 C 0.09 1.50 5.52 85.56 0.47 1.98 16 23 C -0.12 -2.30 4.21 -19.87 -0.08 -2.39 16 24 C -0.12 -2.67 8.63 22.27 0.19 -2.48 16 25 C -0.14 -2.83 10.05 22.27 0.22 -2.60 16 26 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 27 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 28 C -0.11 -1.79 7.42 22.27 0.17 -1.62 16 29 C 0.05 1.32 6.14 86.65 0.53 1.85 16 30 H 0.04 1.60 6.95 -2.39 -0.02 1.58 16 31 H 0.07 2.30 7.75 -2.39 -0.02 2.28 16 32 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 33 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 34 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 35 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.01 0.44 8.08 -2.39 -0.02 0.42 16 38 H 0.35 9.17 8.46 -89.69 -0.76 8.41 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.72 8.05 -2.38 -0.02 1.70 16 41 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.05 0.88 8.13 -2.39 -0.02 0.86 16 44 H 0.10 1.41 8.09 -2.38 -0.02 1.39 16 45 H 0.08 1.43 7.98 -2.38 -0.02 1.41 16 46 H 0.11 2.50 6.90 -2.91 -0.02 2.48 16 47 H 0.12 2.40 8.06 -2.91 -0.02 2.37 16 48 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 49 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 50 H 0.14 1.66 7.85 -2.91 -0.02 1.64 16 51 H 0.07 2.09 8.03 -2.38 -0.02 2.07 16 52 H 0.05 1.23 5.20 -2.39 -0.01 1.22 16 Total: -1.00 -64.93 401.33 0.20 -64.73 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.11 Total: 23.28 kcal Atomic # 6 Polarization: -45.63 SS G_CDS: 4.95 Total: -40.68 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -6.89 Total: -94.24 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -64.93 0.20 -64.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602568275.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.437 kcal (2) G-P(sol) polarization free energy of solvation -64.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds