Wall clock time and date at job start Tue Mar 31 2020 11:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.53004 * 109.46798 * 240.00265 * 2 1 3 5 5 C 1.50701 * 109.47211 * 65.00508 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 C 1.52997 * 109.46903 * 120.00662 * 2 1 3 14 14 N 1.46908 * 109.46699 * 294.99532 * 13 2 1 15 15 C 1.46900 * 110.99509 * 180.02562 * 14 13 2 16 16 H 1.09000 * 110.28927 * 34.30628 * 15 14 13 17 17 C 1.54262 * 110.31863 * 156.42929 * 15 14 13 18 18 C 1.54378 * 105.06183 * 118.89713 * 17 15 14 19 19 H 1.08995 * 110.41220 * 265.07657 * 18 17 15 20 20 C 1.53002 * 110.41455 * 142.62868 * 18 17 15 21 21 N 1.48562 * 104.59259 * 23.85152 * 18 17 15 22 22 C 1.46906 * 110.99899 * 200.95928 * 21 18 17 23 23 C 1.50705 * 109.46985 * 169.99798 * 22 21 18 24 24 C 1.38224 * 120.00360 * 269.73094 * 23 22 21 25 25 C 1.38236 * 120.00207 * 179.78994 * 24 23 22 26 26 C 1.38230 * 119.99923 * 0.45691 * 25 24 23 27 27 C 1.38233 * 120.00009 * 359.77183 * 26 25 24 28 28 C 1.38232 * 119.99669 * 90.00007 * 23 22 21 29 29 C 1.48723 * 104.28919 * 320.57307 * 21 18 17 30 30 H 1.08990 * 109.47425 * 299.99608 * 1 2 3 31 31 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 32 32 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47211 * 304.99535 * 4 2 1 34 34 H 1.09007 * 109.46376 * 185.00077 * 4 2 1 35 35 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.47572 * 54.99886 * 13 2 1 37 37 H 1.09000 * 109.47136 * 175.00019 * 13 2 1 38 38 H 1.00891 * 111.00258 * 303.95434 * 14 13 2 39 39 H 1.09007 * 110.32189 * 237.79265 * 17 15 14 40 40 H 1.08995 * 110.32979 * 0.02562 * 17 15 14 41 41 H 1.08999 * 109.46927 * 61.45538 * 20 18 17 42 42 H 1.09001 * 109.47292 * 181.45553 * 20 18 17 43 43 H 1.08998 * 109.46929 * 301.45581 * 20 18 17 44 44 H 1.08992 * 109.47250 * 289.99831 * 22 21 18 45 45 H 1.08992 * 109.46881 * 50.00302 * 22 21 18 46 46 H 1.08002 * 119.99997 * 359.97438 * 24 23 22 47 47 H 1.08003 * 120.00125 * 180.25097 * 25 24 23 48 48 H 1.08000 * 120.00184 * 179.79193 * 26 25 24 49 49 H 1.08003 * 120.00271 * 179.97438 * 27 26 25 50 50 H 1.08003 * 120.00132 * 359.97438 * 28 23 22 51 51 H 1.08998 * 110.38714 * 280.64080 * 29 21 18 52 52 H 1.08996 * 110.50772 * 158.14509 * 29 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0801 0.9744 -2.3756 7 6 1.9879 -0.4048 -3.7286 8 7 2.6711 -1.5218 -3.8515 9 14 1.4871 0.5560 -5.2502 10 1 0.7308 1.7677 -4.8440 11 1 2.7019 0.9595 -6.0030 12 1 0.6299 -0.2955 -6.1136 13 6 2.0400 -0.7214 1.2491 14 7 1.6514 0.0373 2.4456 15 6 2.1257 -0.6268 3.6671 16 1 3.0840 -1.1132 3.4850 17 6 2.2529 0.3938 4.8168 18 6 1.2775 -0.1041 5.9049 19 1 0.3149 0.3986 5.8113 20 6 1.8683 0.1267 7.2973 21 7 1.1306 -1.5583 5.6389 22 6 -0.1036 -2.0814 6.2398 23 6 -0.3452 -3.4856 5.7491 24 6 -1.0918 -3.6994 4.6056 25 6 -1.3098 -4.9873 4.1531 26 6 -0.7891 -6.0619 4.8494 27 6 -0.0464 -5.8484 5.9956 28 6 0.1751 -4.5603 6.4457 29 6 1.0854 -1.6574 4.1557 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7198 -1.2952 34 1 3.1264 -0.7994 -1.2056 35 1 2.9146 -1.8469 -4.7323 36 1 1.6054 -1.7199 1.2950 37 1 3.1263 -0.7996 1.2055 38 1 1.9882 0.9871 2.3967 39 1 3.2732 0.4069 5.2002 40 1 1.9629 1.3874 4.4750 41 1 2.0251 1.1940 7.4531 42 1 1.1795 -0.2533 8.0518 43 1 2.8212 -0.3963 7.3788 44 1 -0.0050 -2.0877 7.3252 45 1 -0.9433 -1.4475 5.9549 46 1 -1.5024 -2.8601 4.0640 47 1 -1.8897 -5.1541 3.2574 48 1 -0.9621 -7.0683 4.4978 49 1 0.3601 -6.6880 6.5399 50 1 0.7552 -4.3934 7.3413 51 1 0.0924 -1.3988 3.7880 52 1 1.3626 -2.6604 3.8313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602568277.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:57 Heat of formation + Delta-G solvation = 11.736021 kcal Electronic energy + Delta-G solvation = -26552.605665 eV Core-core repulsion = 23129.746614 eV Total energy + Delta-G solvation = -3422.859051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.04133 -38.76262 -36.52728 -34.19782 -32.98748 -31.94224 -31.03520 -30.44129 -29.19035 -26.76446 -26.19778 -25.21702 -24.35541 -22.72758 -22.41985 -21.33597 -20.40424 -20.24517 -18.96871 -16.88562 -16.38468 -16.05822 -15.67320 -15.48067 -15.27556 -15.01187 -14.50732 -14.27155 -13.92534 -13.79433 -13.59368 -13.25999 -13.24121 -12.96484 -12.71217 -12.35430 -12.26252 -12.15697 -11.89000 -11.67343 -11.54201 -11.40741 -11.16192 -11.02249 -11.00522 -10.95470 -10.85426 -10.76379 -10.61587 -10.27788 -10.16390 -9.69201 -9.13038 -9.01087 -8.96439 -8.91703 -8.52453 -8.32099 -8.12670 -5.96526 -3.97610 1.20886 1.30766 3.32438 3.40054 3.44063 3.55450 3.96880 4.41742 4.46945 4.51247 4.59055 4.71368 4.77909 4.89864 4.94431 5.01521 5.13539 5.22651 5.34019 5.37863 5.39321 5.40768 5.44385 5.54310 5.56796 5.69456 5.71987 5.81613 5.84020 5.87273 5.88895 5.94041 6.04631 6.08158 6.10200 6.17754 6.33918 6.41621 6.42262 6.48742 6.56704 6.68109 6.73413 6.86669 6.92297 7.04217 7.18554 7.21769 7.41204 7.66279 7.71917 7.87201 8.03931 8.47914 9.09088 9.65786 11.15035 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013219 B = 0.002822 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.707909 B = 9918.114967 C =11467.845322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.681 5.681 15 C 0.080 3.920 16 H 0.052 0.948 17 C -0.120 4.120 18 C 0.062 3.938 19 H 0.054 0.946 20 C -0.136 4.136 21 N -0.502 5.502 22 C 0.085 3.915 23 C -0.082 4.082 24 C -0.109 4.109 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.124 4.124 28 C -0.101 4.101 29 C 0.048 3.952 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.038 0.962 33 H 0.016 0.984 34 H 0.012 0.988 35 H 0.259 0.741 36 H 0.065 0.935 37 H 0.025 0.975 38 H 0.338 0.662 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.044 0.956 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.059 0.941 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.994 -2.770 24.750 25.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.313 5.313 15 C -0.031 4.031 16 H 0.070 0.930 17 C -0.159 4.159 18 C -0.047 4.047 19 H 0.072 0.928 20 C -0.193 4.193 21 N -0.227 5.227 22 C -0.043 4.043 23 C -0.082 4.082 24 C -0.128 4.128 25 C -0.137 4.137 26 C -0.140 4.140 27 C -0.142 4.142 28 C -0.120 4.120 29 C -0.080 4.080 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.034 0.966 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.157 0.843 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.062 0.938 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.077 0.923 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.108 -3.463 24.894 25.648 hybrid contribution 0.064 0.930 -1.436 1.712 sum -5.045 -2.533 23.457 24.127 Atomic orbital electron populations 1.21573 0.95801 1.00463 1.00029 1.21195 0.95920 0.98870 0.94102 0.92891 1.19123 0.95900 0.95562 0.90455 1.21274 1.34521 1.08198 0.90974 0.92547 1.25023 0.95379 0.95093 0.99099 1.69976 1.39240 1.21211 1.23226 0.86584 0.78259 0.80119 0.83334 1.19764 1.21117 1.21096 1.22192 0.97132 0.97698 0.89407 1.60660 1.63891 1.05518 1.01257 1.22213 0.96354 0.94483 0.90026 0.93023 1.22577 0.99637 0.98785 0.94874 1.22607 0.98114 0.88372 0.95592 0.92842 1.21720 1.01409 1.01070 0.95151 1.65530 1.33470 1.14335 1.09360 1.21192 0.91461 0.91908 0.99698 1.19726 0.97915 0.94834 0.95714 1.21138 0.98586 0.97243 0.95839 1.21167 1.00061 0.92638 0.99809 1.21164 0.98183 0.98951 0.95653 1.21135 0.99203 0.96912 0.96960 1.20987 0.98980 0.92080 0.99933 1.23147 0.99084 0.99175 0.86568 0.94073 0.92837 0.94250 0.96588 0.96961 0.93167 0.91648 0.95722 0.84314 0.90940 0.90633 0.92375 0.92943 0.91810 0.89987 0.93787 0.86176 0.85982 0.86250 0.86253 0.86145 0.92322 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.89 37.16 0.33 -2.03 16 2 C -0.08 -1.67 2.48 -90.62 -0.22 -1.90 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.40 8.41 -34.44 -0.29 -14.69 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.06 1.12 4.92 -3.82 -0.02 1.10 16 14 N -0.68 -9.69 5.73 -105.26 -0.60 -10.29 16 15 C 0.08 1.01 3.38 -66.33 -0.22 0.79 16 16 H 0.05 0.71 7.84 -51.93 -0.41 0.31 16 17 C -0.12 -1.24 6.22 -25.35 -0.16 -1.40 16 18 C 0.06 0.60 2.89 -66.07 -0.19 0.41 16 19 H 0.05 0.54 7.82 -51.93 -0.41 0.13 16 20 C -0.14 -1.09 9.34 37.16 0.35 -0.74 16 21 N -0.50 -5.47 5.16 -223.43 -1.15 -6.62 16 22 C 0.09 0.84 5.08 -4.97 -0.03 0.81 16 23 C -0.08 -0.87 4.65 -104.63 -0.49 -1.35 16 24 C -0.11 -1.21 8.39 -39.59 -0.33 -1.54 16 25 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 26 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 27 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 28 C -0.10 -1.01 9.70 -39.58 -0.38 -1.40 16 29 C 0.05 0.61 4.64 -2.09 -0.01 0.60 16 30 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 31 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.02 0.44 8.07 -51.93 -0.42 0.02 16 38 H 0.34 4.54 8.08 -39.30 -0.32 4.22 16 39 H 0.07 0.71 7.86 -51.93 -0.41 0.30 16 40 H 0.08 0.74 7.54 -51.93 -0.39 0.35 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.39 7.75 -51.93 -0.40 -0.01 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.71 7.72 -51.93 -0.40 0.31 16 45 H 0.04 0.43 7.82 -51.93 -0.41 0.03 16 46 H 0.12 1.30 7.41 -52.49 -0.39 0.91 16 47 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 48 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 49 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 50 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 51 H 0.06 0.80 7.05 -51.93 -0.37 0.43 16 52 H 0.08 1.07 7.76 -51.93 -0.40 0.67 16 LS Contribution 406.09 15.07 6.12 6.12 Total: -1.00 -30.03 406.09 -12.64 -42.67 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -9.64 Total: 1.86 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -3.08 Total: -24.11 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -1.02 Total: -43.33 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.03 -12.64 -42.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602568277.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.404 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds