Wall clock time and date at job start Tue Mar 31 2020 11:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.53004 * 109.46798 * 240.00265 * 2 1 3 5 5 C 1.50701 * 109.47211 * 65.00508 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 C 1.52997 * 109.46903 * 120.00662 * 2 1 3 14 14 N 1.46908 * 109.46699 * 294.99532 * 13 2 1 15 15 C 1.46900 * 110.99509 * 180.02562 * 14 13 2 16 16 H 1.09000 * 110.28927 * 34.30628 * 15 14 13 17 17 C 1.54262 * 110.31863 * 156.42929 * 15 14 13 18 18 C 1.54378 * 105.06183 * 118.89713 * 17 15 14 19 19 H 1.08995 * 110.41220 * 265.07657 * 18 17 15 20 20 C 1.53002 * 110.41455 * 142.62868 * 18 17 15 21 21 N 1.48562 * 104.59259 * 23.85152 * 18 17 15 22 22 C 1.46906 * 110.99899 * 200.95928 * 21 18 17 23 23 C 1.50705 * 109.46985 * 169.99798 * 22 21 18 24 24 C 1.38224 * 120.00360 * 269.73094 * 23 22 21 25 25 C 1.38236 * 120.00207 * 179.78994 * 24 23 22 26 26 C 1.38230 * 119.99923 * 0.45691 * 25 24 23 27 27 C 1.38233 * 120.00009 * 359.77183 * 26 25 24 28 28 C 1.38232 * 119.99669 * 90.00007 * 23 22 21 29 29 C 1.48723 * 104.28919 * 320.57307 * 21 18 17 30 30 H 1.08990 * 109.47425 * 299.99608 * 1 2 3 31 31 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 32 32 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47211 * 304.99535 * 4 2 1 34 34 H 1.09007 * 109.46376 * 185.00077 * 4 2 1 35 35 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.47572 * 54.99886 * 13 2 1 37 37 H 1.09000 * 109.47136 * 175.00019 * 13 2 1 38 38 H 1.00891 * 111.00258 * 303.95434 * 14 13 2 39 39 H 1.09007 * 110.32189 * 237.79265 * 17 15 14 40 40 H 1.08995 * 110.32979 * 0.02562 * 17 15 14 41 41 H 1.08999 * 109.46927 * 61.45538 * 20 18 17 42 42 H 1.09001 * 109.47292 * 181.45553 * 20 18 17 43 43 H 1.08998 * 109.46929 * 301.45581 * 20 18 17 44 44 H 1.08992 * 109.47250 * 289.99831 * 22 21 18 45 45 H 1.08992 * 109.46881 * 50.00302 * 22 21 18 46 46 H 1.08002 * 119.99997 * 359.97438 * 24 23 22 47 47 H 1.08003 * 120.00125 * 180.25097 * 25 24 23 48 48 H 1.08000 * 120.00184 * 179.79193 * 26 25 24 49 49 H 1.08003 * 120.00271 * 179.97438 * 27 26 25 50 50 H 1.08003 * 120.00132 * 359.97438 * 28 23 22 51 51 H 1.08998 * 110.38714 * 280.64080 * 29 21 18 52 52 H 1.08996 * 110.50772 * 158.14509 * 29 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0801 0.9744 -2.3756 7 6 1.9879 -0.4048 -3.7286 8 7 2.6711 -1.5218 -3.8515 9 14 1.4871 0.5560 -5.2502 10 1 0.7308 1.7677 -4.8440 11 1 2.7019 0.9595 -6.0030 12 1 0.6299 -0.2955 -6.1136 13 6 2.0400 -0.7214 1.2491 14 7 1.6514 0.0373 2.4456 15 6 2.1257 -0.6268 3.6671 16 1 3.0840 -1.1132 3.4850 17 6 2.2529 0.3938 4.8168 18 6 1.2775 -0.1041 5.9049 19 1 0.3149 0.3986 5.8113 20 6 1.8683 0.1267 7.2973 21 7 1.1306 -1.5583 5.6389 22 6 -0.1036 -2.0814 6.2398 23 6 -0.3452 -3.4856 5.7491 24 6 -1.0918 -3.6994 4.6056 25 6 -1.3098 -4.9873 4.1531 26 6 -0.7891 -6.0619 4.8494 27 6 -0.0464 -5.8484 5.9956 28 6 0.1751 -4.5603 6.4457 29 6 1.0854 -1.6574 4.1557 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7198 -1.2952 34 1 3.1264 -0.7994 -1.2056 35 1 2.9146 -1.8469 -4.7323 36 1 1.6054 -1.7199 1.2950 37 1 3.1263 -0.7996 1.2055 38 1 1.9882 0.9871 2.3967 39 1 3.2732 0.4069 5.2002 40 1 1.9629 1.3874 4.4750 41 1 2.0251 1.1940 7.4531 42 1 1.1795 -0.2533 8.0518 43 1 2.8212 -0.3963 7.3788 44 1 -0.0050 -2.0877 7.3252 45 1 -0.9433 -1.4475 5.9549 46 1 -1.5024 -2.8601 4.0640 47 1 -1.8897 -5.1541 3.2574 48 1 -0.9621 -7.0683 4.4978 49 1 0.3601 -6.6880 6.5399 50 1 0.7552 -4.3934 7.3413 51 1 0.0924 -1.3988 3.7880 52 1 1.3626 -2.6604 3.8313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602568277.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:57 Heat of formation + Delta-G solvation = -4.777729 kcal Electronic energy + Delta-G solvation = -26553.321755 eV Core-core repulsion = 23129.746614 eV Total energy + Delta-G solvation = -3423.575141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.89384 -39.62680 -37.98771 -35.66071 -34.29115 -33.46257 -31.81914 -31.29095 -30.33574 -28.68810 -27.11372 -26.54818 -25.45356 -24.23272 -23.48594 -22.19158 -21.34573 -21.19436 -20.58143 -18.51016 -17.65408 -17.04778 -16.64582 -16.51224 -16.43171 -16.18554 -15.99556 -15.45463 -15.24331 -14.89453 -14.60196 -14.40094 -14.21604 -14.05956 -13.73542 -13.67150 -13.42434 -13.33210 -13.15561 -12.94139 -12.80967 -12.67645 -12.59340 -12.46582 -12.23203 -12.04656 -11.94189 -11.90068 -11.79604 -11.71513 -11.58021 -11.45716 -11.08823 -10.86790 -10.54781 -9.79837 -9.75735 -9.41793 -9.32620 -8.17964 -6.27265 0.42735 0.52084 1.39382 1.39867 1.52940 2.41445 2.73871 3.05943 3.15490 3.43708 3.59347 3.66906 3.92756 3.96204 4.10476 4.15165 4.17371 4.26141 4.30099 4.35852 4.40860 4.49112 4.56277 4.59023 4.62158 4.65817 4.78364 4.80338 4.83797 4.88604 4.93263 4.96066 5.01726 5.06155 5.09412 5.12729 5.17849 5.18889 5.27732 5.42330 5.45266 5.49389 5.54610 5.57528 5.64108 5.68556 5.79483 5.84133 5.88319 6.05427 6.12234 6.14766 6.30778 6.52124 6.89067 7.41180 8.94404 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013219 B = 0.002822 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.707909 B = 9918.114967 C =11467.845322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.072 4.072 3 H 0.056 0.944 4 C 0.032 3.968 5 C -0.527 4.527 6 H 0.062 0.938 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.080 3.920 14 N -0.674 5.674 15 C 0.078 3.922 16 H 0.040 0.960 17 C -0.114 4.114 18 C 0.062 3.938 19 H 0.054 0.946 20 C -0.130 4.130 21 N -0.505 5.505 22 C 0.088 3.912 23 C -0.091 4.091 24 C -0.125 4.125 25 C -0.135 4.135 26 C -0.130 4.130 27 C -0.128 4.128 28 C -0.109 4.109 29 C 0.058 3.942 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.031 0.969 33 H -0.013 1.013 34 H -0.015 1.015 35 H 0.262 0.738 36 H 0.054 0.946 37 H 0.016 0.984 38 H 0.347 0.653 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.098 0.902 45 H 0.043 0.957 46 H 0.114 0.886 47 H 0.127 0.873 48 H 0.137 0.863 49 H 0.142 0.858 50 H 0.135 0.865 51 H 0.047 0.953 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.452 -1.519 26.264 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 H 0.075 0.925 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.049 4.049 14 N -0.306 5.306 15 C -0.032 4.032 16 H 0.058 0.942 17 C -0.152 4.152 18 C -0.046 4.046 19 H 0.072 0.928 20 C -0.187 4.187 21 N -0.229 5.229 22 C -0.039 4.039 23 C -0.092 4.092 24 C -0.144 4.144 25 C -0.153 4.153 26 C -0.148 4.148 27 C -0.146 4.146 28 C -0.127 4.127 29 C -0.071 4.071 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.006 0.994 34 H 0.003 0.997 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.166 0.834 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.116 0.884 45 H 0.061 0.939 46 H 0.132 0.868 47 H 0.145 0.855 48 H 0.155 0.845 49 H 0.160 0.840 50 H 0.153 0.847 51 H 0.066 0.934 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.573 -2.196 26.431 27.101 hybrid contribution 0.220 0.483 -1.869 1.943 sum -5.353 -1.712 24.562 25.197 Atomic orbital electron populations 1.21460 0.94698 1.00151 1.00480 1.21003 0.96665 0.98462 0.93005 0.92520 1.19012 0.94013 0.94611 0.92874 1.21662 1.34348 1.08490 0.91990 0.91998 1.25967 0.95300 0.96090 1.02711 1.70112 1.40450 1.22952 1.24193 0.85449 0.78078 0.78899 0.78947 1.18470 1.20510 1.20602 1.21848 0.96294 0.97142 0.89626 1.60575 1.63812 1.05691 1.00555 1.22237 0.95667 0.95244 0.90055 0.94234 1.22564 1.00468 0.98335 0.93864 1.22677 0.98067 0.87388 0.96492 0.92835 1.21680 1.01133 1.01999 0.93938 1.65542 1.34148 1.15374 1.07874 1.21217 0.90923 0.91381 1.00414 1.19876 0.98005 0.95570 0.95712 1.21214 0.99365 0.97361 0.96424 1.21374 1.00614 0.92932 1.00374 1.21446 0.97975 0.99584 0.95771 1.21458 0.98707 0.97578 0.96865 1.21240 0.98948 0.92139 1.00398 1.22931 0.98237 0.97906 0.88014 0.91468 0.94337 0.94962 0.99449 0.99697 0.92963 0.92748 0.96572 0.83366 0.90034 0.89690 0.90997 0.92198 0.92256 0.88369 0.93883 0.86750 0.85470 0.84514 0.84036 0.84668 0.93429 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.26 8.89 71.98 0.64 -3.62 16 2 C -0.07 -2.98 2.48 -10.79 -0.03 -3.01 16 3 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 4 C 0.03 1.74 4.45 29.85 0.13 1.87 16 5 C -0.53 -30.07 8.41 25.60 0.22 -29.86 16 6 H 0.06 3.40 7.06 -2.91 -0.02 3.37 16 7 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 8 N -0.94 -57.93 13.29 21.45 0.28 -57.64 16 9 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 C 0.08 2.82 4.92 86.30 0.42 3.25 16 14 N -0.67 -18.61 5.73 -486.94 -2.79 -21.40 16 15 C 0.08 1.93 3.38 45.81 0.15 2.09 16 16 H 0.04 1.09 7.84 -2.39 -0.02 1.07 16 17 C -0.11 -2.12 6.22 31.49 0.20 -1.93 16 18 C 0.06 1.08 2.89 45.06 0.13 1.21 16 19 H 0.05 0.95 7.82 -2.39 -0.02 0.94 16 20 C -0.13 -1.73 9.34 71.98 0.67 -1.06 16 21 N -0.50 -10.40 5.16 -860.80 -4.44 -14.84 16 22 C 0.09 1.63 5.08 85.56 0.43 2.06 16 23 C -0.09 -1.90 4.65 -19.87 -0.09 -1.99 16 24 C -0.13 -2.82 8.39 22.27 0.19 -2.63 16 25 C -0.13 -2.91 10.05 22.27 0.22 -2.68 16 26 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 27 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 28 C -0.11 -2.05 9.70 22.27 0.22 -1.84 16 29 C 0.06 1.45 4.64 86.42 0.40 1.85 16 30 H 0.07 2.23 7.75 -2.39 -0.02 2.21 16 31 H 0.04 1.58 6.95 -2.39 -0.02 1.56 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 34 H -0.02 -0.89 8.14 -2.38 -0.02 -0.91 16 35 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.02 0.59 8.07 -2.39 -0.02 0.57 16 38 H 0.35 8.71 8.08 -89.70 -0.73 7.99 16 39 H 0.08 1.40 7.86 -2.38 -0.02 1.38 16 40 H 0.08 1.45 7.54 -2.39 -0.02 1.43 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.06 0.72 7.75 -2.39 -0.02 0.70 16 43 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.10 1.49 7.72 -2.39 -0.02 1.47 16 45 H 0.04 0.80 7.82 -2.39 -0.02 0.78 16 46 H 0.11 2.60 7.41 -2.91 -0.02 2.57 16 47 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 48 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 49 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 50 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 51 H 0.05 1.30 7.05 -2.39 -0.02 1.28 16 52 H 0.05 1.61 7.76 -2.39 -0.02 1.59 16 Total: -1.00 -65.27 406.09 0.03 -65.24 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.13 Total: 22.12 kcal Atomic # 6 Polarization: -45.17 SS G_CDS: 4.82 Total: -40.35 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -6.95 Total: -93.88 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -65.27 0.03 -65.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602568277.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.463 kcal (2) G-P(sol) polarization free energy of solvation -65.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds