Wall clock time and date at job start Tue Mar 31 2020 11:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47049 * 2 1 4 4 N 1.46908 * 109.47086 * 119.99771 * 2 1 3 5 5 C 1.46896 * 111.00003 * 275.00263 * 4 2 1 6 6 C 1.53001 * 109.47036 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.46795 * 304.99772 * 6 5 4 8 8 C 1.53003 * 109.47313 * 64.99472 * 6 5 4 9 9 C 1.52993 * 109.47182 * 185.00006 * 6 5 4 10 10 C 1.50696 * 109.47420 * 174.99840 * 9 6 5 11 11 H 1.08006 * 119.99899 * 359.97438 * 10 9 6 12 12 C 1.37877 * 120.00333 * 179.97438 * 10 9 6 13 13 N 1.31516 * 120.00153 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99994 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46819 * 60.00448 * 14 12 10 16 16 H 1.48501 * 109.46911 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47602 * 299.99986 * 14 12 10 18 18 C 1.50701 * 109.47069 * 239.99821 * 2 1 3 19 19 C 1.38301 * 119.96328 * 279.99804 * 18 2 1 20 20 C 1.38264 * 120.15005 * 180.02562 * 19 18 2 21 21 C 1.38124 * 120.07654 * 359.96289 * 20 19 18 22 22 C 1.38898 * 119.92434 * 0.26623 * 21 20 19 23 23 N 1.39669 * 120.07990 * 179.75111 * 22 21 20 24 24 C 1.48537 * 110.99755 * 296.82122 * 23 22 21 25 25 C 1.54936 * 103.22532 * 159.71617 * 24 23 22 26 26 C 1.54595 * 102.92438 * 322.58490 * 25 24 23 27 27 C 1.47897 * 110.99863 * 54.21457 * 23 22 21 28 28 C 1.38085 * 119.95934 * 100.02181 * 18 2 1 29 29 H 1.08998 * 109.46809 * 299.99791 * 1 2 3 30 30 H 1.08998 * 109.46767 * 59.99849 * 1 2 3 31 31 H 1.09000 * 109.47049 * 180.02562 * 1 2 3 32 32 H 1.00896 * 110.99549 * 151.04230 * 4 2 1 33 33 H 1.09004 * 109.47126 * 300.00119 * 5 4 2 34 34 H 1.08997 * 109.47239 * 59.99813 * 5 4 2 35 35 H 1.08995 * 109.46584 * 60.00089 * 8 6 5 36 36 H 1.08994 * 109.47094 * 180.02562 * 8 6 5 37 37 H 1.08994 * 109.47193 * 300.00304 * 8 6 5 38 38 H 1.09004 * 109.47307 * 294.99916 * 9 6 5 39 39 H 1.09006 * 109.47305 * 54.99395 * 9 6 5 40 40 H 0.96990 * 120.00181 * 179.97438 * 13 12 10 41 41 H 1.08002 * 119.92718 * 0.02789 * 19 18 2 42 42 H 1.07998 * 119.96728 * 179.97438 * 20 19 18 43 43 H 1.07992 * 120.04370 * 180.02562 * 21 20 19 44 44 H 1.08997 * 110.66759 * 278.15517 * 24 23 22 45 45 H 1.09003 * 110.66744 * 41.28607 * 24 23 22 46 46 H 1.09000 * 110.72468 * 204.22869 * 25 24 23 47 47 H 1.09001 * 110.72352 * 80.94978 * 25 24 23 48 48 H 1.08998 * 110.31216 * 263.03969 * 26 25 24 49 49 H 1.09003 * 110.30626 * 140.86826 * 26 25 24 50 50 H 1.09006 * 109.91778 * 333.51282 * 27 23 22 51 51 H 1.09000 * 109.91921 * 94.80480 * 27 23 22 52 52 H 1.08000 * 120.04148 * 359.97438 * 28 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5962 -0.5328 3.5742 7 1 1.9709 -1.4082 3.7501 8 6 4.0399 -0.9778 3.3318 9 6 2.5439 0.3852 4.7970 10 6 2.9329 -0.3937 6.0270 11 1 3.1911 -1.4392 5.9449 12 6 2.9590 0.2283 7.2573 13 7 2.6450 1.5015 7.3573 14 14 3.4405 -0.7375 8.7820 15 1 4.8184 -1.2666 8.6182 16 1 3.3910 0.1540 9.9687 17 1 2.4956 -1.8673 8.9714 18 6 2.0324 -0.7105 -1.2304 19 6 2.0665 -2.0926 -1.2645 20 6 2.5271 -2.7484 -2.3912 21 6 2.9542 -2.0246 -3.4873 22 6 2.9258 -0.6363 -3.4548 23 7 3.3617 0.0989 -4.5594 24 6 4.8040 -0.1402 -4.8223 25 6 4.9704 0.2887 -6.3018 26 6 3.6535 -0.1939 -6.9519 27 6 2.6531 -0.3201 -5.7880 28 6 2.4585 0.0194 -2.3225 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.9173 -1.1205 1.0288 33 1 2.7588 1.0463 2.1182 34 1 1.0871 0.6163 2.5525 35 1 4.6651 -0.1025 3.1560 36 1 4.4057 -1.5163 4.2060 37 1 4.0771 -1.6318 2.4607 38 1 3.2369 1.2151 4.6582 39 1 1.5323 0.7730 4.9172 40 1 2.6631 1.9389 8.2227 41 1 1.7325 -2.6611 -0.4090 42 1 2.5529 -3.8278 -2.4144 43 1 3.3135 -2.5374 -4.3672 44 1 5.4214 0.4780 -4.1707 45 1 5.0479 -1.1953 -4.6978 46 1 5.8286 -0.2091 -6.7534 47 1 5.0656 1.3716 -6.3810 48 1 3.8006 -1.1619 -7.4310 49 1 3.2993 0.5383 -7.6775 50 1 2.3235 -1.3547 -5.6922 51 1 1.7962 0.3306 -5.9627 52 1 2.4316 1.0987 -2.2953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602573700.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:11 Heat of formation + Delta-G solvation = 13.073774 kcal Electronic energy + Delta-G solvation = -26002.510201 eV Core-core repulsion = 22579.709159 eV Total energy + Delta-G solvation = -3422.801042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.54917 -38.64598 -36.87885 -34.71425 -32.76045 -32.29577 -30.82769 -29.28248 -29.09080 -28.37677 -26.75495 -25.47785 -23.80393 -22.87724 -22.11990 -21.58341 -21.27352 -19.72046 -18.95103 -17.44791 -16.52656 -16.30118 -16.02032 -15.71884 -15.20712 -14.60221 -14.52125 -14.41559 -14.04834 -13.73565 -13.64278 -13.38549 -13.08078 -12.88913 -12.52757 -12.51053 -12.32653 -12.06873 -11.95755 -11.78845 -11.70581 -11.57909 -11.54375 -11.37587 -11.26517 -10.99147 -10.86038 -10.83610 -10.61593 -10.32167 -10.16150 -9.68476 -9.14247 -8.98774 -8.94337 -8.87689 -8.65898 -8.30280 -8.13700 -5.95067 -3.96175 1.12356 1.25693 3.36104 3.40382 3.42891 3.53494 3.56366 4.24008 4.39169 4.40649 4.51201 4.56528 4.63005 4.80427 4.88285 4.95760 5.08667 5.16432 5.29914 5.32372 5.36334 5.40472 5.40926 5.45289 5.47912 5.57151 5.62433 5.62928 5.74600 5.77693 5.85018 5.87165 5.90777 6.02167 6.08263 6.27760 6.30364 6.31600 6.35040 6.39495 6.45966 6.53601 6.60496 6.67056 6.99066 7.13601 7.18426 7.20508 7.41309 7.68531 7.72840 7.89209 8.05284 8.49109 9.09959 9.66929 11.16391 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026265 B = 0.002079 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.784698 B =13465.952596 C =13623.915772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.121 3.879 3 H 0.050 0.950 4 N -0.683 5.683 5 C 0.064 3.936 6 C -0.083 4.083 7 H 0.065 0.935 8 C -0.134 4.134 9 C 0.028 3.972 10 C -0.513 4.513 11 H 0.055 0.945 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.890 3.110 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.077 4.077 19 C -0.101 4.101 20 C -0.112 4.112 21 C -0.155 4.155 22 C 0.076 3.924 23 N -0.483 5.483 24 C 0.038 3.962 25 C -0.124 4.124 26 C -0.132 4.132 27 C 0.036 3.964 28 C -0.089 4.089 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.340 0.660 33 H 0.024 0.976 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.031 0.969 38 H 0.014 0.986 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.134 0.866 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.085 0.915 45 H 0.050 0.950 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.067 0.933 49 H 0.073 0.927 50 H 0.051 0.949 51 H 0.081 0.919 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.965 -4.796 -29.226 29.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.012 3.988 3 H 0.068 0.932 4 N -0.316 5.316 5 C -0.064 4.064 6 C -0.102 4.102 7 H 0.084 0.916 8 C -0.191 4.191 9 C -0.009 4.009 10 C -0.551 4.551 11 H 0.074 0.926 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.078 4.078 19 C -0.119 4.119 20 C -0.131 4.131 21 C -0.175 4.175 22 C -0.018 4.018 23 N -0.204 5.204 24 C -0.088 4.088 25 C -0.162 4.162 26 C -0.170 4.170 27 C -0.090 4.090 28 C -0.108 4.108 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.159 0.841 33 H 0.042 0.958 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.032 0.968 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.152 0.848 42 H 0.139 0.861 43 H 0.133 0.867 44 H 0.103 0.897 45 H 0.068 0.932 46 H 0.091 0.909 47 H 0.095 0.905 48 H 0.086 0.914 49 H 0.092 0.908 50 H 0.070 0.930 51 H 0.099 0.901 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.229 -4.329 -28.817 29.141 hybrid contribution 1.176 -0.767 0.509 1.493 sum 1.405 -5.096 -28.308 28.798 Atomic orbital electron populations 1.21764 0.93655 1.02452 1.01257 1.20449 0.96111 0.95273 0.86996 0.93207 1.60732 1.33475 1.33668 1.03678 1.22195 1.00374 0.93453 0.90411 1.21212 0.95286 0.99445 0.94281 0.91647 1.21738 0.97374 0.99902 1.00106 1.19102 0.97026 0.94197 0.90595 1.21201 1.45315 0.96479 0.92103 0.92639 1.25026 0.95649 0.94896 0.99033 1.69954 1.49162 1.10003 1.24542 0.86688 0.79043 0.79847 0.82584 1.20345 1.21403 1.20284 1.19998 0.98413 0.94004 0.95342 1.21163 0.98557 0.93995 0.98211 1.21033 0.99054 0.99741 0.93262 1.21540 1.02437 0.94377 0.99120 1.18875 1.00024 0.90189 0.92733 1.62390 1.03772 1.52339 1.01934 1.23346 0.88535 1.00046 0.96844 1.22499 0.97291 1.01966 0.94451 1.22420 0.95308 1.01653 0.97619 1.23004 0.97538 0.99882 0.88587 1.20871 0.98172 1.00086 0.91667 0.92058 0.92930 0.91963 0.84064 0.95799 0.91354 0.94060 0.91897 0.95018 0.96785 0.96669 0.93065 0.84807 0.86115 0.86701 0.89691 0.93191 0.90852 0.90505 0.91434 0.90790 0.93029 0.90097 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 9.39 37.16 0.35 -1.27 16 2 C 0.12 1.56 2.82 -68.86 -0.19 1.37 16 3 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 4 N -0.68 -10.00 5.69 -107.95 -0.61 -10.62 16 5 C 0.06 1.12 4.94 -3.83 -0.02 1.10 16 6 C -0.08 -1.71 2.54 -90.62 -0.23 -1.94 16 7 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 8 C -0.13 -2.52 8.77 37.16 0.33 -2.20 16 9 C 0.03 0.73 4.45 -27.89 -0.12 0.60 16 10 C -0.51 -14.42 8.41 -34.44 -0.29 -14.71 16 11 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 12 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 14 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C -0.08 -0.91 4.71 -104.65 -0.49 -1.40 16 19 C -0.10 -1.14 9.00 -39.55 -0.36 -1.50 16 20 C -0.11 -1.13 10.04 -39.61 -0.40 -1.53 16 21 C -0.15 -1.54 7.90 -39.38 -0.31 -1.85 16 22 C 0.08 0.82 4.86 -83.78 -0.41 0.41 16 23 N -0.48 -4.68 5.28 -167.16 -0.88 -5.56 16 24 C 0.04 0.31 6.43 -1.90 -0.01 0.30 16 25 C -0.12 -0.78 7.06 -24.87 -0.18 -0.95 16 26 C -0.13 -0.80 6.93 -25.37 -0.18 -0.97 16 27 C 0.04 0.29 6.48 -2.76 -0.02 0.27 16 28 C -0.09 -1.03 9.59 -39.38 -0.38 -1.41 16 29 H 0.06 0.79 7.45 -51.93 -0.39 0.40 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.34 4.89 6.24 -39.29 -0.25 4.65 16 33 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 34 H 0.07 1.22 7.44 -51.93 -0.39 0.84 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 37 H 0.03 0.50 6.68 -51.93 -0.35 0.16 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.13 1.53 7.71 -52.49 -0.40 1.12 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.12 0.98 7.04 -52.49 -0.37 0.61 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.41 7.03 -51.93 -0.36 0.04 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.05 0.41 6.30 -51.93 -0.33 0.08 16 51 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 52 H 0.13 1.43 8.03 -52.49 -0.42 1.01 16 LS Contribution 402.62 15.07 6.07 6.07 Total: -1.00 -29.84 402.62 -12.15 -41.99 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -9.43 Total: 1.90 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -3.00 Total: -24.20 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -0.76 Total: -42.58 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.84 -12.15 -41.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602573700.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.066 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds