Wall clock time and date at job start Tue Mar 31 2020 11:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47049 * 2 1 4 4 N 1.46908 * 109.47086 * 119.99771 * 2 1 3 5 5 C 1.46896 * 111.00003 * 275.00263 * 4 2 1 6 6 C 1.53001 * 109.47036 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.46795 * 304.99772 * 6 5 4 8 8 C 1.53003 * 109.47313 * 64.99472 * 6 5 4 9 9 C 1.52993 * 109.47182 * 185.00006 * 6 5 4 10 10 C 1.50696 * 109.47420 * 174.99840 * 9 6 5 11 11 H 1.08006 * 119.99899 * 359.97438 * 10 9 6 12 12 C 1.37877 * 120.00333 * 179.97438 * 10 9 6 13 13 N 1.31516 * 120.00153 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99994 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46819 * 60.00448 * 14 12 10 16 16 H 1.48501 * 109.46911 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47602 * 299.99986 * 14 12 10 18 18 C 1.50701 * 109.47069 * 239.99821 * 2 1 3 19 19 C 1.38301 * 119.96328 * 279.99804 * 18 2 1 20 20 C 1.38264 * 120.15005 * 180.02562 * 19 18 2 21 21 C 1.38124 * 120.07654 * 359.96289 * 20 19 18 22 22 C 1.38898 * 119.92434 * 0.26623 * 21 20 19 23 23 N 1.39669 * 120.07990 * 179.75111 * 22 21 20 24 24 C 1.48537 * 110.99755 * 296.82122 * 23 22 21 25 25 C 1.54936 * 103.22532 * 159.71617 * 24 23 22 26 26 C 1.54595 * 102.92438 * 322.58490 * 25 24 23 27 27 C 1.47897 * 110.99863 * 54.21457 * 23 22 21 28 28 C 1.38085 * 119.95934 * 100.02181 * 18 2 1 29 29 H 1.08998 * 109.46809 * 299.99791 * 1 2 3 30 30 H 1.08998 * 109.46767 * 59.99849 * 1 2 3 31 31 H 1.09000 * 109.47049 * 180.02562 * 1 2 3 32 32 H 1.00896 * 110.99549 * 151.04230 * 4 2 1 33 33 H 1.09004 * 109.47126 * 300.00119 * 5 4 2 34 34 H 1.08997 * 109.47239 * 59.99813 * 5 4 2 35 35 H 1.08995 * 109.46584 * 60.00089 * 8 6 5 36 36 H 1.08994 * 109.47094 * 180.02562 * 8 6 5 37 37 H 1.08994 * 109.47193 * 300.00304 * 8 6 5 38 38 H 1.09004 * 109.47307 * 294.99916 * 9 6 5 39 39 H 1.09006 * 109.47305 * 54.99395 * 9 6 5 40 40 H 0.96990 * 120.00181 * 179.97438 * 13 12 10 41 41 H 1.08002 * 119.92718 * 0.02789 * 19 18 2 42 42 H 1.07998 * 119.96728 * 179.97438 * 20 19 18 43 43 H 1.07992 * 120.04370 * 180.02562 * 21 20 19 44 44 H 1.08997 * 110.66759 * 278.15517 * 24 23 22 45 45 H 1.09003 * 110.66744 * 41.28607 * 24 23 22 46 46 H 1.09000 * 110.72468 * 204.22869 * 25 24 23 47 47 H 1.09001 * 110.72352 * 80.94978 * 25 24 23 48 48 H 1.08998 * 110.31216 * 263.03969 * 26 25 24 49 49 H 1.09003 * 110.30626 * 140.86826 * 26 25 24 50 50 H 1.09006 * 109.91778 * 333.51282 * 27 23 22 51 51 H 1.09000 * 109.91921 * 94.80480 * 27 23 22 52 52 H 1.08000 * 120.04148 * 359.97438 * 28 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5962 -0.5328 3.5742 7 1 1.9709 -1.4082 3.7501 8 6 4.0399 -0.9778 3.3318 9 6 2.5439 0.3852 4.7970 10 6 2.9329 -0.3937 6.0270 11 1 3.1911 -1.4392 5.9449 12 6 2.9590 0.2283 7.2573 13 7 2.6450 1.5015 7.3573 14 14 3.4405 -0.7375 8.7820 15 1 4.8184 -1.2666 8.6182 16 1 3.3910 0.1540 9.9687 17 1 2.4956 -1.8673 8.9714 18 6 2.0324 -0.7105 -1.2304 19 6 2.0665 -2.0926 -1.2645 20 6 2.5271 -2.7484 -2.3912 21 6 2.9542 -2.0246 -3.4873 22 6 2.9258 -0.6363 -3.4548 23 7 3.3617 0.0989 -4.5594 24 6 4.8040 -0.1402 -4.8223 25 6 4.9704 0.2887 -6.3018 26 6 3.6535 -0.1939 -6.9519 27 6 2.6531 -0.3201 -5.7880 28 6 2.4585 0.0194 -2.3225 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.9173 -1.1205 1.0288 33 1 2.7588 1.0463 2.1182 34 1 1.0871 0.6163 2.5525 35 1 4.6651 -0.1025 3.1560 36 1 4.4057 -1.5163 4.2060 37 1 4.0771 -1.6318 2.4607 38 1 3.2369 1.2151 4.6582 39 1 1.5323 0.7730 4.9172 40 1 2.6631 1.9389 8.2227 41 1 1.7325 -2.6611 -0.4090 42 1 2.5529 -3.8278 -2.4144 43 1 3.3135 -2.5374 -4.3672 44 1 5.4214 0.4780 -4.1707 45 1 5.0479 -1.1953 -4.6978 46 1 5.8286 -0.2091 -6.7534 47 1 5.0656 1.3716 -6.3810 48 1 3.8006 -1.1619 -7.4310 49 1 3.2993 0.5383 -7.6775 50 1 2.3235 -1.3547 -5.6922 51 1 1.7962 0.3306 -5.9627 52 1 2.4316 1.0987 -2.2953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602573700.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:11 Heat of formation + Delta-G solvation = -2.440860 kcal Electronic energy + Delta-G solvation = -26003.182966 eV Core-core repulsion = 22579.709159 eV Total energy + Delta-G solvation = -3423.473807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30809 -39.53253 -38.13474 -36.16252 -34.37242 -33.32339 -32.02659 -30.21174 -29.84263 -29.16494 -28.64945 -26.97537 -25.00169 -24.13697 -23.19052 -22.49976 -21.80431 -20.81065 -20.42878 -18.56741 -18.20975 -17.15338 -16.89967 -16.74316 -16.57482 -16.15628 -15.61120 -15.31362 -15.06960 -14.93461 -14.67825 -14.37983 -14.22461 -14.07322 -13.75881 -13.61945 -13.48763 -13.27581 -13.06272 -12.96394 -12.82062 -12.71834 -12.61467 -12.49696 -12.26511 -12.23054 -12.22310 -12.06636 -11.88490 -11.75563 -11.47218 -11.45434 -11.05874 -10.92782 -10.51991 -9.77631 -9.64644 -9.46157 -9.37979 -8.16244 -6.25402 0.29444 0.42571 1.40607 1.43552 1.51133 2.42774 2.71466 2.85824 3.16868 3.25452 3.68421 3.70243 3.87227 3.99175 4.06834 4.16072 4.18902 4.25617 4.29867 4.30476 4.43963 4.47121 4.51823 4.55049 4.57500 4.68468 4.74994 4.78618 4.83395 4.86742 4.93669 4.96018 4.96361 5.02359 5.04091 5.09538 5.13997 5.25242 5.26190 5.33681 5.39824 5.47374 5.49071 5.52076 5.55138 5.62417 5.78553 5.81478 5.85123 5.90439 6.11893 6.32250 6.42662 6.49544 6.90373 7.42567 8.95571 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026265 B = 0.002079 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.784698 B =13465.952596 C =13623.915772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.124 3.876 3 H 0.044 0.956 4 N -0.677 5.677 5 C 0.078 3.922 6 C -0.074 4.074 7 H 0.059 0.941 8 C -0.126 4.126 9 C 0.033 3.967 10 C -0.528 4.528 11 H 0.062 0.938 12 C -0.004 4.004 13 N -0.935 5.935 14 Si 0.962 3.038 15 H -0.267 1.267 16 H -0.285 1.285 17 H -0.268 1.268 18 C -0.082 4.082 19 C -0.110 4.110 20 C -0.110 4.110 21 C -0.153 4.153 22 C 0.074 3.926 23 N -0.499 5.499 24 C 0.035 3.965 25 C -0.119 4.119 26 C -0.127 4.127 27 C 0.034 3.966 28 C -0.102 4.102 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.344 0.656 33 H 0.020 0.980 34 H 0.060 0.940 35 H 0.038 0.962 36 H 0.046 0.954 37 H 0.065 0.935 38 H -0.012 1.012 39 H -0.013 1.013 40 H 0.262 0.738 41 H 0.132 0.868 42 H 0.143 0.857 43 H 0.132 0.868 44 H 0.076 0.924 45 H 0.052 0.948 46 H 0.089 0.911 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.052 0.948 51 H 0.076 0.924 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.748 -6.725 -30.924 31.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.014 3.986 3 H 0.062 0.938 4 N -0.309 5.309 5 C -0.051 4.051 6 C -0.093 4.093 7 H 0.077 0.923 8 C -0.183 4.183 9 C -0.004 4.004 10 C -0.567 4.567 11 H 0.080 0.920 12 C -0.202 4.202 13 N -0.576 5.576 14 Si 0.787 3.213 15 H -0.192 1.192 16 H -0.211 1.211 17 H -0.193 1.193 18 C -0.083 4.083 19 C -0.128 4.128 20 C -0.128 4.128 21 C -0.173 4.173 22 C -0.021 4.021 23 N -0.220 5.220 24 C -0.091 4.091 25 C -0.157 4.157 26 C -0.165 4.165 27 C -0.093 4.093 28 C -0.122 4.122 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.164 0.836 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.006 0.994 39 H 0.005 0.995 40 H 0.070 0.930 41 H 0.150 0.850 42 H 0.161 0.839 43 H 0.150 0.850 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.100 0.900 50 H 0.071 0.929 51 H 0.094 0.906 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.013 -6.270 -30.537 31.191 hybrid contribution 0.916 -0.135 0.959 1.333 sum 1.929 -6.405 -29.578 30.325 Atomic orbital electron populations 1.21728 0.93164 1.02458 1.01377 1.20432 0.96455 0.94957 0.86725 0.93782 1.60663 1.33677 1.32985 1.03623 1.21887 0.99557 0.93305 0.90390 1.21000 0.96724 0.98147 0.93381 0.92259 1.21643 0.95697 1.00181 1.00828 1.18995 0.94420 0.94226 0.92792 1.21611 1.44978 0.96948 0.93121 0.92028 1.25976 0.95601 0.95913 1.02664 1.70097 1.50313 1.11777 1.25426 0.85549 0.79176 0.78427 0.78187 1.19208 1.21092 1.19255 1.19847 0.99273 0.94323 0.94870 1.21206 0.99131 0.93653 0.98801 1.21281 0.98012 1.00905 0.92621 1.21736 1.01820 0.94056 0.99671 1.19008 0.99516 0.90749 0.92786 1.62380 1.04704 1.52653 1.02305 1.23390 0.87572 1.00048 0.98050 1.22497 0.98111 1.02001 0.93135 1.22419 0.94448 1.02648 0.96976 1.23060 0.97870 0.99734 0.88610 1.20906 0.99023 0.99987 0.92248 0.93145 0.91595 0.91961 0.83635 0.96186 0.92195 0.94332 0.93480 0.91657 0.99359 0.99490 0.92979 0.84980 0.83937 0.85018 0.90544 0.92981 0.89231 0.90763 0.90139 0.89977 0.92943 0.90552 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.39 71.98 0.68 -2.43 16 2 C 0.12 3.14 2.82 44.17 0.12 3.26 16 3 H 0.04 1.18 7.66 -2.39 -0.02 1.16 16 4 N -0.68 -19.43 5.69 -495.43 -2.82 -22.24 16 5 C 0.08 2.74 4.94 86.30 0.43 3.16 16 6 C -0.07 -3.05 2.54 -10.79 -0.03 -3.07 16 7 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 8 C -0.13 -4.67 8.77 71.98 0.63 -4.04 16 9 C 0.03 1.77 4.45 29.84 0.13 1.91 16 10 C -0.53 -30.18 8.41 25.60 0.22 -29.97 16 11 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 12 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 13 N -0.94 -57.84 13.29 21.45 0.28 -57.56 16 14 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 C -0.08 -1.89 4.71 -19.89 -0.09 -1.98 16 19 C -0.11 -2.31 9.00 22.29 0.20 -2.11 16 20 C -0.11 -1.96 10.04 22.25 0.22 -1.74 16 21 C -0.15 -2.72 7.90 22.40 0.18 -2.55 16 22 C 0.07 1.50 4.86 38.22 0.19 1.69 16 23 N -0.50 -9.10 5.28 -682.76 -3.60 -12.71 16 24 C 0.04 0.53 6.43 86.65 0.56 1.09 16 25 C -0.12 -1.26 7.06 31.80 0.22 -1.03 16 26 C -0.13 -1.24 6.93 31.47 0.22 -1.02 16 27 C 0.03 0.48 6.48 86.45 0.56 1.04 16 28 C -0.10 -2.32 9.59 22.40 0.21 -2.11 16 29 H 0.05 1.30 7.45 -2.39 -0.02 1.28 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.34 9.43 6.24 -89.70 -0.56 8.87 16 33 H 0.02 0.72 8.06 -2.38 -0.02 0.70 16 34 H 0.06 2.21 7.44 -2.39 -0.02 2.19 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 1.88 6.95 -2.39 -0.02 1.86 16 37 H 0.06 1.97 6.68 -2.39 -0.02 1.95 16 38 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 39 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 40 H 0.26 15.26 8.31 -92.72 -0.77 14.49 16 41 H 0.13 2.81 7.71 -2.91 -0.02 2.79 16 42 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 43 H 0.13 1.88 7.04 -2.91 -0.02 1.86 16 44 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.05 0.75 7.03 -2.39 -0.02 0.73 16 46 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.05 0.73 6.30 -2.38 -0.02 0.71 16 51 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.12 2.78 8.03 -2.91 -0.02 2.76 16 Total: -1.00 -64.66 402.62 1.31 -63.35 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.31 Total: 21.92 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 5.11 Total: -39.70 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -6.14 Total: -92.51 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -64.66 1.31 -63.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602573700.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.910 kcal (2) G-P(sol) polarization free energy of solvation -64.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds