Wall clock time and date at job start Tue Mar 31 2020 11:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.50701 * 109.46738 * 179.97438 * 15 14 13 17 17 C 1.38267 * 120.00046 * 269.72606 * 16 15 14 18 18 C 1.38210 * 119.99753 * 179.74765 * 17 16 15 19 19 C 1.38253 * 120.00310 * 0.52820 * 18 17 16 20 20 C 1.38217 * 119.99931 * 359.74703 * 19 18 17 21 21 C 1.50702 * 120.00202 * 179.97438 * 20 19 18 22 22 N 1.46905 * 109.47137 * 269.98076 * 21 20 19 23 23 C 1.48529 * 111.00195 * 52.59956 * 22 21 20 24 24 C 1.54929 * 103.22839 * 159.71932 * 23 22 21 25 25 C 1.54600 * 102.92408 * 322.59069 * 24 23 22 26 26 C 1.47891 * 111.00062 * 170.00063 * 22 21 20 27 27 C 1.38208 * 120.00158 * 90.00347 * 16 15 14 28 28 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 30 30 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 31 31 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 32 32 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 33 33 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 34 34 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 35 35 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 36 36 H 1.00902 * 110.99988 * 303.95038 * 14 13 2 37 37 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 38 38 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 39 39 H 1.07995 * 119.99790 * 359.97438 * 17 16 15 40 40 H 1.08001 * 119.99907 * 180.29794 * 18 17 16 41 41 H 1.07995 * 120.00420 * 179.76931 * 19 18 17 42 42 H 1.09001 * 109.46664 * 29.98045 * 21 20 19 43 43 H 1.09000 * 109.46814 * 149.97982 * 21 20 19 44 44 H 1.08993 * 110.66962 * 278.16261 * 23 22 21 45 45 H 1.09004 * 110.66262 * 41.28766 * 23 22 21 46 46 H 1.09000 * 110.72726 * 204.23297 * 24 23 22 47 47 H 1.09002 * 110.72263 * 80.94610 * 24 23 22 48 48 H 1.08998 * 110.30888 * 263.04104 * 25 24 23 49 49 H 1.08995 * 110.31042 * 140.87112 * 25 24 23 50 50 H 1.09006 * 109.91663 * 333.50615 * 26 22 21 51 51 H 1.09002 * 109.92173 * 94.60194 * 26 22 21 52 52 H 1.08002 * 119.99848 * 0.02562 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7089 0.1782 -4.8708 17 6 0.4973 -0.0761 -5.4867 18 6 0.1126 0.6658 -6.5875 19 6 0.9440 1.6548 -7.0795 20 6 2.1576 1.9052 -6.4672 21 6 3.0641 2.9829 -7.0038 22 7 3.9688 2.4069 -8.0078 23 6 3.2084 1.6667 -9.0471 24 6 4.2010 1.6037 -10.2350 25 6 4.8997 2.9815 -10.1753 26 6 4.7069 3.4677 -8.7269 27 6 2.5400 1.1669 -5.3626 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.1263 -0.7995 1.2057 32 1 1.6053 -1.7197 1.2953 33 1 2.9286 -2.0221 3.0617 34 1 3.1263 -0.7997 -1.2054 35 1 1.6053 -1.7200 -1.2950 36 1 0.6529 0.1791 -2.4753 37 1 3.2127 -0.7042 -3.6399 38 1 1.6921 -1.6250 -3.7299 39 1 -0.1499 -0.8520 -5.1053 40 1 -0.8359 0.4704 -7.0656 41 1 0.6450 2.2320 -7.9419 42 1 2.4632 3.7674 -7.4637 43 1 3.6495 3.4052 -6.1870 44 1 2.9591 0.6639 -8.7004 45 1 2.3077 2.2131 -9.3270 46 1 3.6673 1.4824 -11.1777 47 1 4.9224 0.7990 -10.0926 48 1 4.4295 3.6747 -10.8728 49 1 5.9609 2.8777 -10.4014 50 1 4.1295 4.3922 -8.7194 51 1 5.6757 3.6313 -8.2550 52 1 3.4885 1.3622 -4.8845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602593142.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:27 Heat of formation + Delta-G solvation = 3.412416 kcal Electronic energy + Delta-G solvation = -25550.001816 eV Core-core repulsion = 22126.781826 eV Total energy + Delta-G solvation = -3423.219990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.10415 -38.73449 -36.97986 -34.57049 -33.41517 -32.28536 -30.73955 -30.40495 -29.14173 -26.63942 -26.18637 -25.80288 -24.18297 -22.52198 -22.21016 -21.29354 -21.18484 -20.40941 -19.18296 -16.82905 -16.66842 -16.43036 -16.23176 -15.92743 -15.44975 -14.78816 -14.55771 -14.35428 -13.98261 -13.76340 -13.68503 -13.49107 -13.28495 -13.06485 -12.90587 -12.49077 -12.34922 -12.32026 -11.99349 -11.82286 -11.67674 -11.61408 -11.46408 -11.39893 -11.05169 -10.99286 -10.96494 -10.93055 -10.67164 -10.20713 -10.05449 -9.82532 -9.44145 -9.00804 -8.88449 -8.65170 -8.44553 -8.27168 -8.16525 -6.29651 -3.97572 1.16569 1.30261 3.45318 3.47166 3.49276 3.67731 3.87193 4.23547 4.30486 4.50045 4.54930 4.59690 4.61651 4.68939 4.84749 4.87032 4.98712 5.03507 5.12978 5.22841 5.28384 5.32688 5.37955 5.41030 5.44452 5.46596 5.56609 5.59317 5.62012 5.71133 5.71682 5.74612 5.79160 5.93223 5.97241 5.98814 6.17767 6.30975 6.38093 6.40116 6.48500 6.53699 6.57666 6.66346 6.82857 6.89116 7.03873 7.05930 7.28143 7.45607 7.57503 7.66123 8.29861 8.53275 8.95482 9.73764 11.10737 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023327 B = 0.001932 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.039630 B =14489.509797 C =14977.781592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 H 0.067 0.933 4 C 0.015 3.985 5 C -0.593 4.593 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.916 5.916 9 Si 1.068 2.932 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.063 3.937 14 N -0.684 5.684 15 C 0.095 3.905 16 C -0.075 4.075 17 C -0.113 4.113 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.086 4.086 21 C 0.087 3.913 22 N -0.511 5.511 23 C 0.037 3.963 24 C -0.126 4.126 25 C -0.131 4.131 26 C 0.033 3.967 27 C -0.074 4.074 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.006 0.994 32 H 0.005 0.995 33 H 0.268 0.732 34 H 0.067 0.933 35 H 0.023 0.977 36 H 0.339 0.661 37 H 0.079 0.921 38 H 0.035 0.965 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.044 0.956 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.072 0.928 50 H 0.044 0.956 51 H 0.080 0.920 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.663 7.042 -30.677 31.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.096 4.096 3 H 0.085 0.915 4 C -0.023 4.023 5 C -0.632 4.632 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.552 5.552 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.065 4.065 14 N -0.315 5.315 15 C -0.034 4.034 16 C -0.076 4.076 17 C -0.132 4.132 18 C -0.140 4.140 19 C -0.136 4.136 20 C -0.087 4.087 21 C -0.040 4.040 22 N -0.236 5.236 23 C -0.091 4.091 24 C -0.164 4.164 25 C -0.169 4.169 26 C -0.094 4.094 27 C -0.093 4.093 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.024 0.976 32 H 0.023 0.977 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.158 0.842 37 H 0.097 0.903 38 H 0.053 0.947 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.132 0.868 42 H 0.061 0.939 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.062 0.938 46 H 0.088 0.912 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.091 0.909 50 H 0.062 0.938 51 H 0.099 0.901 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.337 7.140 -28.681 29.558 hybrid contribution -1.355 -0.202 -2.140 2.541 sum -1.018 6.939 -30.820 31.608 Atomic orbital electron populations 1.21731 0.96491 1.00390 1.00455 1.21084 0.95005 1.00047 0.93480 0.91474 1.19240 0.95364 0.95404 0.92267 1.22033 1.38607 1.10258 0.92276 0.93217 1.25829 0.94770 0.97172 1.01388 1.70780 1.36295 1.14701 1.33465 0.83564 0.75995 0.75177 0.75652 1.20872 1.21482 1.21548 1.22171 1.00348 0.94420 0.89591 1.60606 1.19793 1.50306 1.00835 1.20896 1.00914 0.93949 0.87620 1.19857 0.94517 0.96955 0.96251 1.21072 0.96119 0.99858 0.96177 1.21017 0.99510 0.96419 0.97008 1.20971 0.94317 0.98520 0.99741 1.19653 0.94836 0.97879 0.96311 1.21229 0.93239 0.93679 0.95894 1.64890 1.24133 1.22315 1.12221 1.23251 0.95170 0.99535 0.91139 1.22501 0.98472 0.97560 0.97854 1.22397 1.01463 0.97002 0.96062 1.22902 0.99508 0.93344 0.93693 1.20895 0.99395 0.94137 0.94912 0.94132 0.91728 0.94807 0.97580 0.97690 0.92201 0.91465 0.95863 0.84195 0.90258 0.94725 0.86398 0.86268 0.86794 0.93882 0.89533 0.89889 0.93796 0.91152 0.90689 0.91608 0.90946 0.93762 0.90149 0.85747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.77 37.16 0.33 -2.23 16 2 C -0.08 -1.62 2.55 -90.62 -0.23 -1.85 16 3 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 4 C 0.01 0.38 3.76 -27.88 -0.10 0.28 16 5 C -0.59 -17.00 8.41 -34.44 -0.29 -17.29 16 6 H 0.05 1.40 7.06 -52.49 -0.37 1.03 16 7 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 8 N -0.92 -28.49 13.65 55.43 0.76 -27.74 16 9 Si 1.07 25.73 29.90 -169.99 -5.08 20.65 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 13 C 0.06 1.11 5.14 -3.82 -0.02 1.09 16 14 N -0.68 -10.35 6.49 -115.06 -0.75 -11.10 16 15 C 0.10 1.22 5.81 -4.98 -0.03 1.20 16 16 C -0.08 -0.90 5.39 -104.62 -0.56 -1.46 16 17 C -0.11 -1.22 9.70 -39.58 -0.38 -1.60 16 18 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 19 C -0.12 -1.10 8.34 -39.58 -0.33 -1.43 16 20 C -0.09 -0.89 4.59 -104.62 -0.48 -1.37 16 21 C 0.09 0.79 5.19 -4.97 -0.03 0.76 16 22 N -0.51 -4.57 5.39 -231.90 -1.25 -5.82 16 23 C 0.04 0.29 4.97 -1.90 -0.01 0.28 16 24 C -0.13 -0.82 7.06 -24.87 -0.18 -1.00 16 25 C -0.13 -0.79 6.93 -25.37 -0.18 -0.97 16 26 C 0.03 0.24 6.69 -2.76 -0.02 0.22 16 27 C -0.07 -0.87 9.36 -39.58 -0.37 -1.24 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.35 6.95 -51.93 -0.36 0.99 16 30 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 31 H 0.01 0.16 8.01 -51.93 -0.42 -0.25 16 32 H 0.00 0.13 8.00 -51.93 -0.42 -0.28 16 33 H 0.27 8.30 7.22 -40.82 -0.29 8.00 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.34 4.98 6.98 -39.29 -0.27 4.70 16 37 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 38 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 41 H 0.11 0.88 7.39 -52.49 -0.39 0.50 16 42 H 0.04 0.36 7.76 -51.93 -0.40 -0.05 16 43 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 44 H 0.08 0.75 7.73 -51.93 -0.40 0.35 16 45 H 0.04 0.33 7.09 -51.93 -0.37 -0.04 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.04 0.30 7.57 -51.93 -0.39 -0.09 16 51 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 52 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 405.07 15.07 6.10 6.10 Total: -1.00 -31.06 405.07 -13.16 -44.21 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -9.56 Total: 1.63 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -3.38 Total: -27.94 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: -1.24 Total: -44.66 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.65 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.06 -13.16 -44.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602593142.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.624 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds