Wall clock time and date at job start Tue Mar 31 2020 11:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.50701 * 109.46738 * 179.97438 * 15 14 13 17 17 C 1.38267 * 120.00046 * 269.72606 * 16 15 14 18 18 C 1.38210 * 119.99753 * 179.74765 * 17 16 15 19 19 C 1.38253 * 120.00310 * 0.52820 * 18 17 16 20 20 C 1.38217 * 119.99931 * 359.74703 * 19 18 17 21 21 C 1.50702 * 120.00202 * 179.97438 * 20 19 18 22 22 N 1.46905 * 109.47137 * 269.98076 * 21 20 19 23 23 C 1.48529 * 111.00195 * 52.59956 * 22 21 20 24 24 C 1.54929 * 103.22839 * 159.71932 * 23 22 21 25 25 C 1.54600 * 102.92408 * 322.59069 * 24 23 22 26 26 C 1.47891 * 111.00062 * 170.00063 * 22 21 20 27 27 C 1.38208 * 120.00158 * 90.00347 * 16 15 14 28 28 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 30 30 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 31 31 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 32 32 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 33 33 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 34 34 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 35 35 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 36 36 H 1.00902 * 110.99988 * 303.95038 * 14 13 2 37 37 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 38 38 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 39 39 H 1.07995 * 119.99790 * 359.97438 * 17 16 15 40 40 H 1.08001 * 119.99907 * 180.29794 * 18 17 16 41 41 H 1.07995 * 120.00420 * 179.76931 * 19 18 17 42 42 H 1.09001 * 109.46664 * 29.98045 * 21 20 19 43 43 H 1.09000 * 109.46814 * 149.97982 * 21 20 19 44 44 H 1.08993 * 110.66962 * 278.16261 * 23 22 21 45 45 H 1.09004 * 110.66262 * 41.28766 * 23 22 21 46 46 H 1.09000 * 110.72726 * 204.23297 * 24 23 22 47 47 H 1.09002 * 110.72263 * 80.94610 * 24 23 22 48 48 H 1.08998 * 110.30888 * 263.04104 * 25 24 23 49 49 H 1.08995 * 110.31042 * 140.87112 * 25 24 23 50 50 H 1.09006 * 109.91663 * 333.50615 * 26 22 21 51 51 H 1.09002 * 109.92173 * 94.60194 * 26 22 21 52 52 H 1.08002 * 119.99848 * 0.02562 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7089 0.1782 -4.8708 17 6 0.4973 -0.0761 -5.4867 18 6 0.1126 0.6658 -6.5875 19 6 0.9440 1.6548 -7.0795 20 6 2.1576 1.9052 -6.4672 21 6 3.0641 2.9829 -7.0038 22 7 3.9688 2.4069 -8.0078 23 6 3.2084 1.6667 -9.0471 24 6 4.2010 1.6037 -10.2350 25 6 4.8997 2.9815 -10.1753 26 6 4.7069 3.4677 -8.7269 27 6 2.5400 1.1669 -5.3626 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.1263 -0.7995 1.2057 32 1 1.6053 -1.7197 1.2953 33 1 2.9286 -2.0221 3.0617 34 1 3.1263 -0.7997 -1.2054 35 1 1.6053 -1.7200 -1.2950 36 1 0.6529 0.1791 -2.4753 37 1 3.2127 -0.7042 -3.6399 38 1 1.6921 -1.6250 -3.7299 39 1 -0.1499 -0.8520 -5.1053 40 1 -0.8359 0.4704 -7.0656 41 1 0.6450 2.2320 -7.9419 42 1 2.4632 3.7674 -7.4637 43 1 3.6495 3.4052 -6.1870 44 1 2.9591 0.6639 -8.7004 45 1 2.3077 2.2131 -9.3270 46 1 3.6673 1.4824 -11.1777 47 1 4.9224 0.7990 -10.0926 48 1 4.4295 3.6747 -10.8728 49 1 5.9609 2.8777 -10.4014 50 1 4.1295 4.3922 -8.7194 51 1 5.6757 3.6313 -8.2550 52 1 3.4885 1.3622 -4.8845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602593142.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:26 Heat of formation + Delta-G solvation = -14.232035 kcal Electronic energy + Delta-G solvation = -25550.766937 eV Core-core repulsion = 22126.781826 eV Total energy + Delta-G solvation = -3423.985111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.84847 -39.45486 -38.42752 -36.09120 -34.51879 -33.78241 -31.85356 -31.13445 -29.71651 -28.54974 -27.52273 -26.48838 -25.76096 -24.04946 -23.24394 -22.02250 -21.70852 -21.26769 -20.81737 -18.88864 -17.64798 -17.11787 -16.90567 -16.85616 -16.34968 -16.01521 -15.75668 -15.58876 -15.43710 -15.03783 -14.89825 -14.55248 -14.16161 -14.14101 -13.88578 -13.59379 -13.55015 -13.27416 -13.15033 -13.03508 -12.96842 -12.85096 -12.50400 -12.45120 -12.22273 -12.03088 -12.01412 -11.93506 -11.75795 -11.71369 -11.60249 -11.43839 -11.30810 -10.58359 -10.52092 -9.76407 -9.73443 -9.39786 -9.29957 -8.65422 -6.34372 0.36220 0.49199 1.52395 1.61186 1.80139 2.57810 2.67648 3.18090 3.18562 3.38865 3.61009 3.76064 3.79132 3.94059 3.99914 4.10000 4.10915 4.12897 4.20926 4.28760 4.32831 4.35926 4.37917 4.53553 4.58441 4.60965 4.64963 4.69410 4.73724 4.74355 4.81489 4.90395 4.91618 4.96501 5.01408 5.06666 5.11048 5.15336 5.19648 5.22542 5.29688 5.29859 5.46806 5.53445 5.60728 5.63128 5.71748 5.93787 5.95274 6.02310 6.08194 6.12405 6.22181 6.41001 6.62108 7.46410 8.75133 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023327 B = 0.001932 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.039630 B =14489.509797 C =14977.781592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.070 4.070 3 H 0.054 0.946 4 C 0.017 3.983 5 C -0.605 4.605 6 H 0.052 0.948 7 C -0.044 4.044 8 N -0.941 5.941 9 Si 1.117 2.883 10 H -0.285 1.285 11 H -0.270 1.270 12 H -0.268 1.268 13 C 0.077 3.923 14 N -0.684 5.684 15 C 0.099 3.901 16 C -0.089 4.089 17 C -0.120 4.120 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.089 4.089 21 C 0.090 3.910 22 N -0.529 5.529 23 C 0.038 3.962 24 C -0.124 4.124 25 C -0.128 4.128 26 C 0.030 3.970 27 C -0.092 4.092 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.067 0.933 31 H -0.017 1.017 32 H -0.012 1.012 33 H 0.254 0.746 34 H 0.057 0.943 35 H 0.027 0.973 36 H 0.344 0.656 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.129 0.871 40 H 0.144 0.856 41 H 0.135 0.865 42 H 0.054 0.946 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.085 0.915 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.050 0.950 51 H 0.076 0.924 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.234 8.383 -32.590 33.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.089 4.089 3 H 0.072 0.928 4 C -0.021 4.021 5 C -0.643 4.643 6 H 0.070 0.930 7 C -0.241 4.241 8 N -0.579 5.579 9 Si 0.938 3.062 10 H -0.210 1.210 11 H -0.195 1.195 12 H -0.193 1.193 13 C -0.052 4.052 14 N -0.316 5.316 15 C -0.029 4.029 16 C -0.089 4.089 17 C -0.139 4.139 18 C -0.138 4.138 19 C -0.133 4.133 20 C -0.090 4.090 21 C -0.038 4.038 22 N -0.254 5.254 23 C -0.090 4.090 24 C -0.162 4.162 25 C -0.166 4.166 26 C -0.097 4.097 27 C -0.111 4.111 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.001 0.999 32 H 0.006 0.994 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.164 0.836 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.147 0.853 40 H 0.162 0.838 41 H 0.152 0.848 42 H 0.072 0.928 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.104 0.896 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.095 0.905 50 H 0.069 0.931 51 H 0.095 0.905 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.238 8.486 -30.633 31.811 hybrid contribution -0.841 -0.618 -1.638 1.942 sum -2.079 7.869 -32.271 33.281 Atomic orbital electron populations 1.21635 0.94769 1.00726 1.01137 1.20908 0.96382 0.98799 0.92801 0.92767 1.19178 0.93841 0.94840 0.94222 1.22434 1.38058 1.10408 0.93407 0.92961 1.27429 0.94099 0.97317 1.05249 1.70918 1.38209 1.15995 1.32779 0.82943 0.76966 0.74500 0.71801 1.21027 1.19531 1.19344 1.21860 0.99651 0.94324 0.89381 1.60519 1.20196 1.50210 1.00723 1.20865 1.00586 0.94437 0.87045 1.19781 0.95442 0.97410 0.96284 1.21251 0.95717 1.00364 0.96585 1.21331 1.00370 0.95729 0.96406 1.21229 0.93678 0.98391 0.99968 1.19805 0.95474 0.97833 0.95853 1.21183 0.93166 0.93514 0.95888 1.64856 1.24506 1.23163 1.12863 1.23223 0.95769 0.98671 0.91312 1.22505 0.98152 0.97628 0.97950 1.22398 1.01902 0.96854 0.95406 1.22953 0.99199 0.93242 0.94319 1.20921 0.99280 0.94988 0.95909 0.93938 0.93662 0.91443 0.99902 0.99414 0.93708 0.92402 0.95519 0.83607 0.90854 0.93872 0.85326 0.83809 0.84761 0.92809 0.90302 0.91364 0.93024 0.89641 0.91465 0.90343 0.90474 0.93127 0.90540 0.86897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 8.77 71.98 0.63 -4.06 16 2 C -0.07 -2.95 2.55 -10.79 -0.03 -2.97 16 3 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 4 C 0.02 0.89 3.76 29.85 0.11 1.00 16 5 C -0.61 -35.15 8.41 25.60 0.22 -34.93 16 6 H 0.05 2.95 7.06 -2.91 -0.02 2.93 16 7 C -0.04 -2.63 5.46 84.65 0.46 -2.17 16 8 N -0.94 -59.85 13.65 21.45 0.29 -59.56 16 9 Si 1.12 51.43 29.90 68.60 2.05 53.48 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 13 C 0.08 2.71 5.14 86.31 0.44 3.15 16 14 N -0.68 -20.21 6.49 -517.93 -3.36 -23.57 16 15 C 0.10 2.50 5.81 85.56 0.50 3.00 16 16 C -0.09 -2.05 5.39 -19.86 -0.11 -2.16 16 17 C -0.12 -2.37 9.70 22.27 0.22 -2.15 16 18 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 19 C -0.11 -1.90 8.34 22.27 0.19 -1.71 16 20 C -0.09 -1.75 4.59 -19.86 -0.09 -1.84 16 21 C 0.09 1.55 5.19 85.56 0.44 1.99 16 22 N -0.53 -9.01 5.39 -887.60 -4.78 -13.79 16 23 C 0.04 0.55 4.97 86.65 0.43 0.98 16 24 C -0.12 -1.42 7.06 31.80 0.22 -1.20 16 25 C -0.13 -1.31 6.93 31.47 0.22 -1.09 16 26 C 0.03 0.41 6.69 86.45 0.58 0.98 16 27 C -0.09 -2.14 9.36 22.27 0.21 -1.93 16 28 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.04 1.85 6.95 -2.39 -0.02 1.83 16 30 H 0.07 2.06 6.68 -2.39 -0.02 2.04 16 31 H -0.02 -0.99 8.01 -2.39 -0.02 -1.01 16 32 H -0.01 -0.70 8.00 -2.39 -0.02 -0.72 16 33 H 0.25 16.35 7.22 -92.71 -0.67 15.68 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.34 9.51 6.98 -89.69 -0.63 8.89 16 37 H 0.07 1.92 8.09 -2.39 -0.02 1.90 16 38 H 0.04 1.02 8.08 -2.39 -0.02 1.00 16 39 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 40 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 41 H 0.13 1.66 7.39 -2.91 -0.02 1.64 16 42 H 0.05 0.79 7.76 -2.39 -0.02 0.78 16 43 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16 44 H 0.07 1.18 7.73 -2.39 -0.02 1.16 16 45 H 0.05 0.66 7.09 -2.39 -0.02 0.64 16 46 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.05 0.60 7.57 -2.38 -0.02 0.58 16 51 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.11 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -67.53 405.07 -0.60 -68.12 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.34 Total: 22.21 kcal Atomic # 6 Polarization: -51.75 SS G_CDS: 4.87 Total: -46.89 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -7.85 Total: -96.92 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.05 Total: 53.48 kcal Total: -67.53 -0.60 -68.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602593142.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.891 kcal (2) G-P(sol) polarization free energy of solvation -67.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds