Wall clock time and date at job start Tue Mar 31 2020 11:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47187 * 2 1 4 4 C 1.52999 * 109.46860 * 240.00265 * 2 1 3 5 5 C 1.50697 * 109.47235 * 64.99920 * 4 2 1 6 6 H 1.08005 * 120.00069 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00138 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99945 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00118 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47066 * 60.00584 * 9 7 5 11 11 H 1.48498 * 109.47127 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47411 * 300.00431 * 9 7 5 13 13 C 1.53002 * 109.46564 * 120.00508 * 2 1 3 14 14 N 1.46903 * 109.47165 * 294.99181 * 13 2 1 15 15 C 1.46898 * 110.99774 * 180.02562 * 14 13 2 16 16 C 1.50709 * 109.46669 * 180.02562 * 15 14 13 17 17 C 1.38262 * 119.99658 * 90.00485 * 16 15 14 18 18 C 1.38208 * 119.99554 * 180.02562 * 17 16 15 19 19 C 1.38255 * 120.00357 * 359.97438 * 18 17 16 20 20 C 1.38220 * 119.99681 * 359.97438 * 19 18 17 21 21 C 1.50706 * 119.99654 * 180.02562 * 20 19 18 22 22 N 1.46898 * 109.46877 * 90.00316 * 21 20 19 23 23 C 1.48538 * 111.00166 * 52.60356 * 22 21 20 24 24 C 1.54933 * 103.23069 * 159.71948 * 23 22 21 25 25 C 1.54596 * 102.91920 * 322.58709 * 24 23 22 26 26 C 1.47905 * 111.00115 * 169.99761 * 22 21 20 27 27 C 1.38205 * 119.99867 * 270.02162 * 16 15 14 28 28 H 1.09004 * 109.47385 * 59.99214 * 1 2 3 29 29 H 1.08997 * 109.47695 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46886 * 300.00111 * 1 2 3 31 31 H 1.08993 * 109.47037 * 185.00556 * 4 2 1 32 32 H 1.09005 * 109.46790 * 305.00479 * 4 2 1 33 33 H 0.96991 * 120.00214 * 180.02562 * 8 7 5 34 34 H 1.09006 * 109.46342 * 174.99751 * 13 2 1 35 35 H 1.08991 * 109.47547 * 54.99891 * 13 2 1 36 36 H 1.00902 * 110.99696 * 56.05224 * 14 13 2 37 37 H 1.08990 * 109.47083 * 60.00577 * 15 14 13 38 38 H 1.08997 * 109.47102 * 300.00100 * 15 14 13 39 39 H 1.07992 * 119.99989 * 359.97438 * 17 16 15 40 40 H 1.08000 * 120.00313 * 179.97438 * 18 17 16 41 41 H 1.08000 * 120.00604 * 179.70652 * 19 18 17 42 42 H 1.08997 * 109.47118 * 210.00049 * 21 20 19 43 43 H 1.08996 * 109.47165 * 330.00477 * 21 20 19 44 44 H 1.09004 * 110.66284 * 278.15399 * 23 22 21 45 45 H 1.09005 * 110.66673 * 41.28092 * 23 22 21 46 46 H 1.08994 * 110.72953 * 204.22743 * 24 23 22 47 47 H 1.08998 * 110.72295 * 80.94284 * 24 23 22 48 48 H 1.08998 * 110.30581 * 263.03783 * 25 24 23 49 49 H 1.09004 * 110.31200 * 140.87505 * 25 24 23 50 50 H 1.08999 * 109.91135 * 333.50696 * 26 22 21 51 51 H 1.08996 * 109.91870 * 94.60450 * 26 22 21 52 52 H 1.08005 * 120.00151 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9747 -2.3756 7 6 1.9931 -0.4016 -3.7283 8 7 2.6763 -1.5186 -3.8512 9 14 1.4995 0.5636 -5.2495 10 1 2.0918 1.9240 -5.1865 11 1 1.9954 -0.1358 -6.4620 12 1 0.0196 0.6704 -5.3095 13 6 2.0399 -0.7214 1.2492 14 7 1.6514 0.0373 2.4457 15 6 2.1257 -0.6268 3.6671 16 6 1.7087 0.1784 4.8709 17 6 0.4946 -0.0720 5.4833 18 6 0.1120 0.6668 6.5869 19 6 0.9434 1.6559 7.0788 20 6 2.1575 1.9055 6.4671 21 6 3.0640 2.9832 7.0037 22 7 3.9674 2.4076 8.0088 23 6 4.6755 1.2184 7.4694 24 6 5.9040 1.0832 8.4037 25 6 6.2990 2.5538 8.6703 26 6 5.0253 3.3707 8.3843 27 6 2.5397 1.1674 5.3623 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.1262 -0.7995 -1.2056 32 1 1.6052 -1.7197 -1.2952 33 1 2.9241 -1.8412 -4.7317 34 1 3.1263 -0.7996 1.2055 35 1 1.6053 -1.7199 1.2951 36 1 0.6528 0.1792 2.4753 37 1 3.2125 -0.7040 3.6400 38 1 1.6919 -1.6248 3.7299 39 1 -0.1549 -0.8443 5.0988 40 1 -0.8365 0.4715 7.0651 41 1 0.6423 2.2364 7.9383 42 1 3.6503 3.4047 6.1872 43 1 2.4630 3.7683 7.4625 44 1 4.0437 0.3325 7.5340 45 1 4.9916 1.3926 6.4409 46 1 6.7129 0.5513 7.9028 47 1 5.6292 0.5831 9.3324 48 1 7.1020 2.8576 7.9988 49 1 6.6048 2.6812 9.7088 50 1 5.2053 4.0635 7.5623 51 1 4.7262 3.9220 9.2757 52 1 3.4881 1.3629 4.8840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602593143.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:30 Heat of formation + Delta-G solvation = 6.822826 kcal Electronic energy + Delta-G solvation = -25692.939768 eV Core-core repulsion = 22269.867665 eV Total energy + Delta-G solvation = -3423.072104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.06968 -38.67006 -36.89571 -34.43053 -33.32173 -32.19477 -30.75644 -30.36499 -29.06041 -27.01579 -26.16516 -25.73190 -24.32370 -22.23341 -22.08520 -21.69185 -21.13360 -20.16253 -18.93127 -16.76195 -16.48091 -16.33356 -16.18438 -15.84564 -15.21116 -14.87879 -14.74344 -14.27555 -14.17364 -13.89569 -13.59348 -13.43584 -13.15127 -12.92319 -12.64691 -12.49297 -12.33490 -12.20402 -11.95402 -11.79947 -11.71299 -11.60940 -11.40486 -11.36772 -10.97299 -10.95100 -10.88422 -10.86519 -10.72419 -10.33126 -10.20194 -9.71238 -9.18117 -8.99008 -8.98508 -8.79808 -8.61570 -8.31865 -8.12294 -5.96687 -3.97837 1.22122 1.31997 3.35069 3.39316 3.41932 3.49684 3.91085 4.28824 4.36352 4.46844 4.56294 4.61750 4.68771 4.70871 4.89040 4.95419 5.04574 5.08694 5.18855 5.26669 5.33943 5.38920 5.39597 5.40823 5.47709 5.52432 5.57558 5.61681 5.67792 5.77039 5.78505 5.81285 5.84804 5.96584 5.99911 6.06544 6.25948 6.35753 6.45761 6.47027 6.53538 6.56559 6.61183 6.69791 6.90432 6.95692 7.11551 7.17903 7.35790 7.64633 7.70715 7.86883 8.03519 8.47395 9.08257 9.65373 11.14808 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.002119 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.505469 B =13210.229347 C =13961.081801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.685 5.685 15 C 0.095 3.905 16 C -0.075 4.075 17 C -0.113 4.113 18 C -0.122 4.122 19 C -0.102 4.102 20 C -0.087 4.087 21 C 0.086 3.914 22 N -0.512 5.512 23 C 0.035 3.965 24 C -0.125 4.125 25 C -0.131 4.131 26 C 0.033 3.967 27 C -0.090 4.090 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.031 0.969 31 H 0.015 0.985 32 H 0.014 0.986 33 H 0.260 0.740 34 H 0.067 0.933 35 H 0.024 0.976 36 H 0.339 0.661 37 H 0.077 0.923 38 H 0.035 0.965 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.046 0.954 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.047 0.953 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.066 0.934 49 H 0.071 0.929 50 H 0.045 0.955 51 H 0.078 0.922 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.810 5.939 27.897 28.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.316 5.316 15 C -0.034 4.034 16 C -0.076 4.076 17 C -0.132 4.132 18 C -0.140 4.140 19 C -0.121 4.121 20 C -0.087 4.087 21 C -0.041 4.041 22 N -0.237 5.237 23 C -0.092 4.092 24 C -0.164 4.164 25 C -0.169 4.169 26 C -0.095 4.095 27 C -0.109 4.109 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.158 0.842 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.064 0.936 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.063 0.937 51 H 0.097 0.903 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.116 6.120 28.161 28.896 hybrid contribution -0.423 -0.066 -1.645 1.700 sum 1.693 6.055 26.516 27.251 Atomic orbital electron populations 1.21745 0.96697 1.00422 1.00291 1.21220 0.94869 1.00089 0.94093 0.91658 1.19106 0.96118 0.95361 0.90344 1.21201 1.34684 1.08252 0.90993 0.92625 1.25025 0.95353 0.95112 0.99098 1.69954 1.39031 1.21232 1.23474 0.86684 0.78853 0.80143 0.82469 1.20280 1.21384 1.20310 1.22167 1.00369 0.94456 0.89466 1.60629 1.19813 1.50335 1.00869 1.20888 1.00761 0.94014 0.87708 1.19819 0.94513 0.96949 0.96282 1.21072 0.96045 0.99908 0.96204 1.21074 0.99629 0.96415 0.96863 1.20946 0.93838 0.97935 0.99354 1.19654 0.95403 0.97732 0.95916 1.21222 0.94465 0.94987 0.93435 1.64910 1.16104 1.05768 1.36873 1.23269 0.94683 0.94520 0.96741 1.22494 0.97353 0.96392 1.00117 1.22397 0.97118 0.95358 1.02075 1.22896 0.90886 0.94856 1.00822 1.20913 0.99573 0.94968 0.95411 0.91856 0.94028 0.94967 0.96676 0.96755 0.93051 0.91452 0.95778 0.84195 0.90452 0.94688 0.86390 0.86212 0.86248 0.93604 0.89841 0.89890 0.93444 0.91010 0.90818 0.91483 0.91046 0.93662 0.90333 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.77 37.16 0.33 -2.20 16 2 C -0.08 -1.73 2.55 -90.62 -0.23 -1.96 16 3 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.44 8.41 -34.44 -0.29 -14.73 16 6 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.06 1.11 5.14 -3.82 -0.02 1.09 16 14 N -0.68 -10.24 6.49 -115.06 -0.75 -10.99 16 15 C 0.10 1.20 5.81 -4.97 -0.03 1.17 16 16 C -0.08 -0.88 5.39 -104.62 -0.56 -1.45 16 17 C -0.11 -1.22 9.70 -39.58 -0.38 -1.61 16 18 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 19 C -0.10 -1.01 9.70 -39.58 -0.38 -1.39 16 20 C -0.09 -0.90 4.59 -104.62 -0.48 -1.38 16 21 C 0.09 0.79 5.19 -4.97 -0.03 0.76 16 22 N -0.51 -4.61 5.39 -231.89 -1.25 -5.86 16 23 C 0.04 0.31 4.97 -1.90 -0.01 0.30 16 24 C -0.13 -0.91 7.06 -24.87 -0.18 -1.09 16 25 C -0.13 -0.87 6.93 -25.38 -0.18 -1.04 16 26 C 0.03 0.25 6.70 -2.75 -0.02 0.23 16 27 C -0.09 -1.01 8.00 -39.59 -0.32 -1.33 16 28 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.03 0.51 6.68 -51.93 -0.35 0.17 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.34 4.93 6.98 -39.29 -0.27 4.65 16 37 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 38 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.05 0.42 7.75 -51.93 -0.40 0.02 16 43 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 44 H 0.08 0.81 7.74 -51.93 -0.40 0.41 16 45 H 0.05 0.43 7.09 -51.93 -0.37 0.07 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.05 0.33 7.57 -51.93 -0.39 -0.06 16 51 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 52 H 0.12 1.34 7.39 -52.48 -0.39 0.95 16 LS Contribution 406.39 15.07 6.12 6.12 Total: -1.00 -30.06 406.39 -13.17 -43.24 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -9.62 Total: 1.17 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -3.40 Total: -24.13 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: -1.26 Total: -43.20 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.06 -13.17 -43.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602593143.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.058 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds