Wall clock time and date at job start Tue Mar 31 2020 11:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47187 * 2 1 4 4 C 1.52999 * 109.46860 * 240.00265 * 2 1 3 5 5 C 1.50697 * 109.47235 * 64.99920 * 4 2 1 6 6 H 1.08005 * 120.00069 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00138 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99945 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00118 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47066 * 60.00584 * 9 7 5 11 11 H 1.48498 * 109.47127 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47411 * 300.00431 * 9 7 5 13 13 C 1.53002 * 109.46564 * 120.00508 * 2 1 3 14 14 N 1.46903 * 109.47165 * 294.99181 * 13 2 1 15 15 C 1.46898 * 110.99774 * 180.02562 * 14 13 2 16 16 C 1.50709 * 109.46669 * 180.02562 * 15 14 13 17 17 C 1.38262 * 119.99658 * 90.00485 * 16 15 14 18 18 C 1.38208 * 119.99554 * 180.02562 * 17 16 15 19 19 C 1.38255 * 120.00357 * 359.97438 * 18 17 16 20 20 C 1.38220 * 119.99681 * 359.97438 * 19 18 17 21 21 C 1.50706 * 119.99654 * 180.02562 * 20 19 18 22 22 N 1.46898 * 109.46877 * 90.00316 * 21 20 19 23 23 C 1.48538 * 111.00166 * 52.60356 * 22 21 20 24 24 C 1.54933 * 103.23069 * 159.71948 * 23 22 21 25 25 C 1.54596 * 102.91920 * 322.58709 * 24 23 22 26 26 C 1.47905 * 111.00115 * 169.99761 * 22 21 20 27 27 C 1.38205 * 119.99867 * 270.02162 * 16 15 14 28 28 H 1.09004 * 109.47385 * 59.99214 * 1 2 3 29 29 H 1.08997 * 109.47695 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46886 * 300.00111 * 1 2 3 31 31 H 1.08993 * 109.47037 * 185.00556 * 4 2 1 32 32 H 1.09005 * 109.46790 * 305.00479 * 4 2 1 33 33 H 0.96991 * 120.00214 * 180.02562 * 8 7 5 34 34 H 1.09006 * 109.46342 * 174.99751 * 13 2 1 35 35 H 1.08991 * 109.47547 * 54.99891 * 13 2 1 36 36 H 1.00902 * 110.99696 * 56.05224 * 14 13 2 37 37 H 1.08990 * 109.47083 * 60.00577 * 15 14 13 38 38 H 1.08997 * 109.47102 * 300.00100 * 15 14 13 39 39 H 1.07992 * 119.99989 * 359.97438 * 17 16 15 40 40 H 1.08000 * 120.00313 * 179.97438 * 18 17 16 41 41 H 1.08000 * 120.00604 * 179.70652 * 19 18 17 42 42 H 1.08997 * 109.47118 * 210.00049 * 21 20 19 43 43 H 1.08996 * 109.47165 * 330.00477 * 21 20 19 44 44 H 1.09004 * 110.66284 * 278.15399 * 23 22 21 45 45 H 1.09005 * 110.66673 * 41.28092 * 23 22 21 46 46 H 1.08994 * 110.72953 * 204.22743 * 24 23 22 47 47 H 1.08998 * 110.72295 * 80.94284 * 24 23 22 48 48 H 1.08998 * 110.30581 * 263.03783 * 25 24 23 49 49 H 1.09004 * 110.31200 * 140.87505 * 25 24 23 50 50 H 1.08999 * 109.91135 * 333.50696 * 26 22 21 51 51 H 1.08996 * 109.91870 * 94.60450 * 26 22 21 52 52 H 1.08005 * 120.00151 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9747 -2.3756 7 6 1.9931 -0.4016 -3.7283 8 7 2.6763 -1.5186 -3.8512 9 14 1.4995 0.5636 -5.2495 10 1 2.0918 1.9240 -5.1865 11 1 1.9954 -0.1358 -6.4620 12 1 0.0196 0.6704 -5.3095 13 6 2.0399 -0.7214 1.2492 14 7 1.6514 0.0373 2.4457 15 6 2.1257 -0.6268 3.6671 16 6 1.7087 0.1784 4.8709 17 6 0.4946 -0.0720 5.4833 18 6 0.1120 0.6668 6.5869 19 6 0.9434 1.6559 7.0788 20 6 2.1575 1.9055 6.4671 21 6 3.0640 2.9832 7.0037 22 7 3.9674 2.4076 8.0088 23 6 4.6755 1.2184 7.4694 24 6 5.9040 1.0832 8.4037 25 6 6.2990 2.5538 8.6703 26 6 5.0253 3.3707 8.3843 27 6 2.5397 1.1674 5.3623 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.1262 -0.7995 -1.2056 32 1 1.6052 -1.7197 -1.2952 33 1 2.9241 -1.8412 -4.7317 34 1 3.1263 -0.7996 1.2055 35 1 1.6053 -1.7199 1.2951 36 1 0.6528 0.1792 2.4753 37 1 3.2125 -0.7040 3.6400 38 1 1.6919 -1.6248 3.7299 39 1 -0.1549 -0.8443 5.0988 40 1 -0.8365 0.4715 7.0651 41 1 0.6423 2.2364 7.9383 42 1 3.6503 3.4047 6.1872 43 1 2.4630 3.7683 7.4625 44 1 4.0437 0.3325 7.5340 45 1 4.9916 1.3926 6.4409 46 1 6.7129 0.5513 7.9028 47 1 5.6292 0.5831 9.3324 48 1 7.1020 2.8576 7.9988 49 1 6.6048 2.6812 9.7088 50 1 5.2053 4.0635 7.5623 51 1 4.7262 3.9220 9.2757 52 1 3.4881 1.3629 4.8840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602593143.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:29 Heat of formation + Delta-G solvation = -9.816863 kcal Electronic energy + Delta-G solvation = -25693.661320 eV Core-core repulsion = 22269.867665 eV Total energy + Delta-G solvation = -3423.793655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.83232 -39.40898 -38.30814 -35.87511 -34.43250 -33.77278 -31.86210 -31.13169 -29.67858 -28.91662 -27.47084 -26.46147 -25.83345 -23.90129 -22.92280 -22.44947 -21.70520 -21.06136 -20.53331 -18.54695 -17.52434 -17.15397 -16.89099 -16.85566 -16.61470 -16.12294 -15.78347 -15.72048 -15.20450 -14.92659 -14.61828 -14.33384 -14.21569 -14.13705 -13.94778 -13.60195 -13.41964 -13.23389 -13.14807 -13.07511 -12.89371 -12.74213 -12.57017 -12.45268 -12.24573 -12.21499 -12.02328 -11.97526 -11.77744 -11.71406 -11.50104 -11.43690 -11.08133 -10.95209 -10.53152 -9.75161 -9.69431 -9.37170 -9.28531 -8.17531 -6.26680 0.41268 0.50161 1.39798 1.42616 1.50271 2.41814 2.70977 3.15621 3.18534 3.45122 3.63563 3.76463 3.81120 3.96137 4.05081 4.09240 4.19301 4.21919 4.24919 4.33898 4.37294 4.41843 4.45284 4.59533 4.61858 4.65595 4.67495 4.75279 4.77057 4.81262 4.86235 4.91593 4.96391 5.02236 5.07094 5.13127 5.16195 5.21272 5.23023 5.29787 5.37312 5.47439 5.54564 5.57284 5.67698 5.71783 5.79082 5.88785 5.92176 6.01395 6.03832 6.14662 6.30887 6.46698 6.88909 7.41339 8.94291 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.002119 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.505469 B =13210.229347 C =13961.081801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.075 4.075 3 H 0.054 0.946 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.077 3.923 14 N -0.685 5.685 15 C 0.099 3.901 16 C -0.088 4.088 17 C -0.120 4.120 18 C -0.122 4.122 19 C -0.105 4.105 20 C -0.090 4.090 21 C 0.089 3.911 22 N -0.520 5.520 23 C 0.036 3.964 24 C -0.124 4.124 25 C -0.129 4.129 26 C 0.030 3.970 27 C -0.100 4.100 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.064 0.936 31 H -0.014 1.014 32 H -0.009 1.009 33 H 0.262 0.738 34 H 0.058 0.942 35 H 0.026 0.974 36 H 0.344 0.656 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.129 0.871 40 H 0.143 0.857 41 H 0.136 0.864 42 H 0.040 0.960 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.039 0.961 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.082 0.918 50 H 0.045 0.955 51 H 0.086 0.914 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.762 7.170 29.301 30.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.094 4.094 3 H 0.073 0.927 4 C -0.004 4.004 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.052 4.052 14 N -0.317 5.317 15 C -0.029 4.029 16 C -0.088 4.088 17 C -0.139 4.139 18 C -0.140 4.140 19 C -0.124 4.124 20 C -0.091 4.091 21 C -0.039 4.039 22 N -0.244 5.244 23 C -0.092 4.092 24 C -0.162 4.162 25 C -0.167 4.167 26 C -0.097 4.097 27 C -0.119 4.119 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.005 0.995 32 H 0.009 0.991 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.163 0.837 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.147 0.853 40 H 0.161 0.839 41 H 0.154 0.846 42 H 0.059 0.941 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.057 0.943 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.101 0.899 50 H 0.064 0.936 51 H 0.105 0.895 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.061 7.363 29.587 30.508 hybrid contribution -0.079 -0.455 -2.004 2.057 sum 0.982 6.908 27.583 28.451 Atomic orbital electron populations 1.21649 0.94975 1.00724 1.01027 1.21011 0.96232 0.98913 0.93241 0.92706 1.18998 0.94212 0.94614 0.92620 1.21606 1.34524 1.08551 0.92079 0.92149 1.25962 0.95289 0.96134 1.02666 1.70092 1.40218 1.22925 1.24338 0.85558 0.78956 0.78738 0.78151 1.19360 1.21001 1.19153 1.21859 0.99666 0.94317 0.89341 1.60541 1.20191 1.50225 1.00772 1.20863 1.00584 0.94432 0.87058 1.19759 0.95346 0.97411 0.96300 1.21251 0.95754 1.00364 0.96546 1.21363 1.00438 0.95803 0.96388 1.21214 0.93503 0.97990 0.99662 1.19806 0.95903 0.97779 0.95590 1.21216 0.94436 0.94812 0.93417 1.64919 1.16667 1.06160 1.36654 1.23209 0.95122 0.94112 0.96711 1.22499 0.96843 0.97093 0.99781 1.22406 0.96820 0.94536 1.02922 1.22970 0.90884 0.94741 1.01113 1.20932 0.99453 0.95439 0.96065 0.93585 0.93925 0.91690 0.99524 0.99084 0.92936 0.92386 0.95587 0.83651 0.90789 0.93912 0.85332 0.83937 0.84592 0.94149 0.88836 0.91174 0.94292 0.90367 0.90753 0.91034 0.89904 0.93647 0.89546 0.87044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 8.77 71.98 0.63 -4.02 16 2 C -0.08 -3.11 2.55 -10.79 -0.03 -3.14 16 3 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 4 C 0.03 1.76 4.45 29.85 0.13 1.89 16 5 C -0.53 -30.25 8.41 25.60 0.22 -30.04 16 6 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 8 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 9 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 C 0.08 2.69 5.14 86.30 0.44 3.14 16 14 N -0.69 -19.92 6.49 -517.93 -3.36 -23.28 16 15 C 0.10 2.44 5.81 85.56 0.50 2.94 16 16 C -0.09 -1.99 5.39 -19.86 -0.11 -2.09 16 17 C -0.12 -2.39 9.70 22.27 0.22 -2.18 16 18 C -0.12 -2.13 10.05 22.27 0.22 -1.91 16 19 C -0.11 -1.88 9.70 22.27 0.22 -1.66 16 20 C -0.09 -1.79 4.59 -19.86 -0.09 -1.88 16 21 C 0.09 1.53 5.19 85.56 0.44 1.97 16 22 N -0.52 -8.84 5.39 -887.56 -4.78 -13.62 16 23 C 0.04 0.63 4.97 86.65 0.43 1.06 16 24 C -0.12 -1.69 7.06 31.80 0.22 -1.46 16 25 C -0.13 -1.51 6.93 31.47 0.22 -1.29 16 26 C 0.03 0.42 6.70 86.44 0.58 0.99 16 27 C -0.10 -2.23 8.00 22.27 0.18 -2.05 16 28 H 0.05 1.84 6.95 -2.38 -0.02 1.82 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.95 6.68 -2.38 -0.02 1.94 16 31 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 32 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 33 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 34 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.34 9.41 6.98 -89.69 -0.63 8.78 16 37 H 0.07 1.86 8.09 -2.39 -0.02 1.84 16 38 H 0.04 1.00 8.08 -2.39 -0.02 0.98 16 39 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.04 0.73 7.75 -2.39 -0.02 0.71 16 43 H 0.09 1.40 8.09 -2.39 -0.02 1.38 16 44 H 0.07 1.37 7.74 -2.38 -0.02 1.35 16 45 H 0.04 0.73 7.09 -2.38 -0.02 0.71 16 46 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.05 0.61 7.57 -2.39 -0.02 0.60 16 51 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.11 2.57 7.39 -2.91 -0.02 2.55 16 Total: -1.00 -64.74 406.39 -0.71 -65.45 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.24 Total: 21.36 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 4.89 Total: -39.46 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -7.86 Total: -94.22 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -64.74 -0.71 -65.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602593143.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.630 kcal (2) G-P(sol) polarization free energy of solvation -64.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds