Wall clock time and date at job start Tue Mar 31 2020 11:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47199 * 2 1 4 4 C 1.52999 * 109.47069 * 239.99565 * 2 1 3 5 5 C 1.50706 * 109.46573 * 65.00394 * 4 2 1 6 6 H 1.07995 * 120.00167 * 359.72054 * 5 4 2 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47487 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47233 * 120.00158 * 9 7 5 12 12 H 1.48508 * 109.46883 * 239.99963 * 9 7 5 13 13 C 1.53003 * 109.46755 * 119.99953 * 2 1 3 14 14 N 1.46894 * 109.47533 * 294.99652 * 13 2 1 15 15 C 1.46897 * 111.00411 * 180.02562 * 14 13 2 16 16 H 1.08998 * 110.28628 * 32.87337 * 15 14 13 17 17 C 1.54390 * 110.32300 * 270.64061 * 15 14 13 18 18 N 1.48559 * 104.59103 * 217.24886 * 17 15 14 19 19 C 1.46900 * 110.99837 * 159.03923 * 18 17 15 20 20 C 1.50700 * 109.47600 * 174.70874 * 19 18 17 21 21 C 1.38235 * 119.99710 * 269.72916 * 20 19 18 22 22 C 1.38237 * 119.99829 * 179.76074 * 21 20 19 23 23 C 1.38235 * 119.99913 * 0.50728 * 22 21 20 24 24 C 1.38229 * 120.00005 * 359.74350 * 23 22 21 25 25 C 1.38235 * 120.00172 * 89.99719 * 20 19 18 26 26 C 1.48561 * 104.22556 * 39.48534 * 18 17 15 27 27 C 1.54264 * 110.32597 * 155.00224 * 15 14 13 28 28 H 1.08993 * 110.32159 * 359.97438 * 27 15 14 29 29 C 1.53000 * 110.31986 * 237.78995 * 27 15 14 30 30 H 1.09000 * 109.47048 * 59.99887 * 1 2 3 31 31 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46743 * 300.00156 * 1 2 3 33 33 H 1.09000 * 109.47486 * 305.00460 * 4 2 1 34 34 H 1.09001 * 109.47362 * 184.99737 * 4 2 1 35 35 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.47422 * 55.00049 * 13 2 1 37 37 H 1.09005 * 109.46949 * 174.99658 * 13 2 1 38 38 H 1.00905 * 111.00040 * 56.04663 * 14 13 2 39 39 H 1.09007 * 110.40680 * 336.02578 * 17 15 14 40 40 H 1.08997 * 110.40924 * 98.47142 * 17 15 14 41 41 H 1.09007 * 109.47406 * 294.70737 * 19 18 17 42 42 H 1.09007 * 109.47292 * 54.70433 * 19 18 17 43 43 H 1.08001 * 120.00092 * 359.97438 * 21 20 19 44 44 H 1.08001 * 119.99930 * 180.22953 * 22 21 20 45 45 H 1.08000 * 119.99493 * 179.72057 * 23 22 21 46 46 H 1.08006 * 120.00272 * 179.97438 * 24 23 22 47 47 H 1.07998 * 119.99756 * 0.02562 * 25 20 19 48 48 H 1.08998 * 110.41095 * 201.74060 * 26 18 17 49 49 H 1.08996 * 110.51254 * 79.33828 * 26 18 17 50 50 H 1.09002 * 109.47369 * 60.00194 * 29 27 15 51 51 H 1.09005 * 109.46630 * 179.97438 * 29 27 15 52 52 H 1.08994 * 109.47582 * 299.99872 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0765 0.9720 -2.3759 7 6 1.9933 -0.4018 -3.7282 8 7 2.6764 -1.5189 -3.8511 9 14 1.4997 0.5634 -5.2495 10 1 0.7423 1.7743 -4.8434 11 1 2.7181 0.9682 -5.9958 12 1 0.6459 -0.2855 -6.1188 13 6 2.0399 -0.7213 1.2493 14 7 1.6514 0.0374 2.4457 15 6 2.1257 -0.6266 3.6672 16 1 3.0715 -1.1343 3.4784 17 6 1.0686 -1.6295 4.1773 18 7 1.1339 -1.5215 5.6576 19 6 -0.1040 -2.0140 6.2764 20 6 0.0480 -2.0107 7.7757 21 6 0.5371 -3.1298 8.4233 22 6 0.6812 -3.1250 9.7981 23 6 0.3262 -2.0049 10.5264 24 6 -0.1678 -0.8878 9.8793 25 6 -0.3070 -0.8906 8.5040 26 6 1.3138 -0.0686 5.9100 27 6 2.2870 0.4003 4.8071 28 1 2.0146 1.3969 4.4600 29 6 3.7251 0.3931 5.3291 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6053 -1.7199 -1.2951 34 1 3.1263 -0.7995 -1.2056 35 1 2.9236 -1.8418 -4.7316 36 1 1.6053 -1.7199 1.2952 37 1 3.1263 -0.7996 1.2056 38 1 0.6528 0.1793 2.4754 39 1 0.0772 -1.3519 3.8192 40 1 1.3195 -2.6412 3.8585 41 1 -0.9341 -1.3664 5.9940 42 1 -0.3026 -3.0295 5.9336 43 1 0.8100 -4.0066 7.8548 44 1 1.0668 -3.9980 10.3037 45 1 0.4345 -2.0029 11.6009 46 1 -0.4455 -0.0128 10.4483 47 1 -0.6936 -0.0181 7.9985 48 1 1.7493 0.0949 6.8958 49 1 0.3615 0.4547 5.8243 50 1 4.4071 0.6511 4.5189 51 1 3.8236 1.1230 6.1327 52 1 3.9695 -0.5995 5.7074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602617844.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:46 Heat of formation + Delta-G solvation = 10.158193 kcal Electronic energy + Delta-G solvation = -26103.076544 eV Core-core repulsion = 22680.149073 eV Total energy + Delta-G solvation = -3422.927471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.08989 -38.99417 -36.52508 -34.42664 -32.98738 -31.62349 -31.32772 -31.15880 -28.03575 -26.86198 -26.73447 -25.48698 -24.06941 -22.83772 -22.32266 -21.54493 -21.10300 -19.97320 -18.83882 -17.04769 -16.50764 -16.21766 -15.97126 -15.53336 -15.22070 -14.94204 -14.55041 -14.05033 -14.01120 -13.68651 -13.58914 -13.54755 -13.19455 -13.07430 -12.71506 -12.59819 -12.48040 -12.16014 -12.08369 -11.89760 -11.49450 -11.44477 -11.22114 -11.14447 -11.00778 -10.89155 -10.78746 -10.72815 -10.68785 -10.32108 -10.15746 -9.72788 -9.18890 -9.15386 -9.08981 -8.93795 -8.66287 -8.32836 -8.11340 -5.97264 -3.98309 1.06267 1.14549 3.32221 3.39858 3.42567 3.43900 3.94083 4.37060 4.42534 4.48596 4.53727 4.60242 4.72773 4.75502 4.86708 5.01012 5.05613 5.12716 5.22895 5.27903 5.32445 5.37996 5.38586 5.48603 5.55968 5.70803 5.71818 5.73643 5.77229 5.80084 5.85313 5.91351 6.02820 6.06141 6.12879 6.17638 6.24181 6.25516 6.29038 6.35398 6.45251 6.55475 6.63297 6.72083 6.79225 6.97088 7.10172 7.17519 7.40060 7.64023 7.70933 7.86696 8.03181 8.46994 9.08338 9.65101 11.14250 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031197 B = 0.002028 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.296943 B =13806.060261 C =13979.688858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.681 5.681 15 C 0.088 3.912 16 H 0.088 0.912 17 C 0.004 3.996 18 N -0.499 5.499 19 C 0.080 3.920 20 C -0.072 4.072 21 C -0.099 4.099 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.113 4.113 26 C 0.036 3.964 27 C -0.088 4.088 28 H 0.086 0.914 29 C -0.136 4.136 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.030 0.970 33 H 0.014 0.986 34 H 0.015 0.985 35 H 0.259 0.741 36 H 0.024 0.976 37 H 0.067 0.933 38 H 0.337 0.663 39 H 0.045 0.955 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.083 0.917 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.117 0.883 48 H 0.080 0.920 49 H 0.041 0.959 50 H 0.057 0.943 51 H 0.050 0.950 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 -0.644 28.429 28.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.064 4.064 14 N -0.312 5.312 15 C -0.023 4.023 16 H 0.106 0.894 17 C -0.125 4.125 18 N -0.223 5.223 19 C -0.048 4.048 20 C -0.073 4.073 21 C -0.118 4.118 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.140 4.140 25 C -0.132 4.132 26 C -0.092 4.092 27 C -0.108 4.108 28 H 0.105 0.895 29 C -0.194 4.194 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.156 0.844 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.135 0.865 48 H 0.098 0.902 49 H 0.059 0.941 50 H 0.076 0.924 51 H 0.069 0.931 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.836 -0.654 28.456 28.721 hybrid contribution -1.591 0.055 -1.173 1.978 sum -5.427 -0.598 27.283 27.824 Atomic orbital electron populations 1.21738 0.96788 1.00359 1.00195 1.21225 0.94764 1.00114 0.94231 0.91657 1.19112 0.96161 0.95334 0.90368 1.21279 1.34382 1.08380 0.90989 0.92525 1.25030 0.95385 0.95100 0.99124 1.69976 1.39173 1.21228 1.23253 0.86575 0.78250 0.80113 0.83292 1.19769 1.21078 1.21150 1.22176 1.00318 0.94470 0.89438 1.60728 1.19464 1.49777 1.01214 1.22414 0.97763 0.92149 0.89977 0.89374 1.23952 0.98810 1.01654 0.88106 1.65409 1.32918 1.16030 1.07956 1.21226 0.91397 1.01380 0.90763 1.19714 0.98708 0.94072 0.94798 1.21040 0.98305 0.98131 0.94324 1.21156 1.00214 0.98390 0.94211 1.21142 0.99543 0.93677 0.99798 1.21110 0.99973 0.98382 0.94499 1.21062 1.00279 0.97692 0.94138 1.23259 0.98284 0.87841 0.99799 1.21945 0.95518 0.99718 0.93572 0.89523 1.21752 0.95360 1.01697 1.00582 0.91872 0.94070 0.95111 0.96787 0.96632 0.93164 0.95810 0.91407 0.84373 0.93663 0.90057 0.93719 0.89901 0.86011 0.86159 0.86302 0.86222 0.86453 0.90162 0.94106 0.92414 0.93090 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.77 37.16 0.33 -2.13 16 2 C -0.08 -1.71 2.55 -90.62 -0.23 -1.94 16 3 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.33 8.41 -34.44 -0.29 -14.62 16 6 H 0.06 1.55 7.05 -52.49 -0.37 1.18 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.06 1.10 4.99 -3.83 -0.02 1.08 16 14 N -0.68 -9.67 6.22 -105.26 -0.65 -10.33 16 15 C 0.09 1.08 3.03 -66.32 -0.20 0.88 16 16 H 0.09 1.17 7.38 -51.93 -0.38 0.79 16 17 C 0.00 0.05 6.15 -2.18 -0.01 0.04 16 18 N -0.50 -5.23 5.36 -231.39 -1.24 -6.47 16 19 C 0.08 0.75 4.97 -4.98 -0.02 0.72 16 20 C -0.07 -0.67 5.10 -104.62 -0.53 -1.20 16 21 C -0.10 -0.88 9.70 -39.58 -0.38 -1.27 16 22 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 23 C -0.12 -0.94 10.05 -39.59 -0.40 -1.34 16 24 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 25 C -0.11 -0.97 8.73 -39.58 -0.35 -1.32 16 26 C 0.04 0.36 5.02 -2.18 -0.01 0.35 16 27 C -0.09 -0.96 3.44 -89.23 -0.31 -1.27 16 28 H 0.09 1.00 7.95 -51.93 -0.41 0.59 16 29 C -0.14 -1.41 8.90 37.16 0.33 -1.08 16 30 H 0.06 1.27 6.94 -51.93 -0.36 0.91 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.03 0.47 6.68 -51.93 -0.35 0.13 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 38 H 0.34 4.59 6.34 -39.29 -0.25 4.34 16 39 H 0.05 0.51 7.41 -51.93 -0.38 0.13 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.04 0.41 7.83 -51.93 -0.41 0.00 16 42 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 43 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 44 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 46 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 47 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 48 H 0.08 0.81 7.53 -51.93 -0.39 0.42 16 49 H 0.04 0.40 7.83 -51.93 -0.41 -0.01 16 50 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 51 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 52 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 406.49 15.07 6.13 6.13 Total: -1.00 -29.72 406.49 -12.77 -42.49 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -9.60 Total: 1.48 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -3.12 Total: -23.76 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -1.16 Total: -43.07 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -29.72 -12.77 -42.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602617844.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.649 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds