Wall clock time and date at job start Tue Mar 31 2020 11:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47199 * 2 1 4 4 C 1.52999 * 109.47069 * 239.99565 * 2 1 3 5 5 C 1.50706 * 109.46573 * 65.00394 * 4 2 1 6 6 H 1.07995 * 120.00167 * 359.72054 * 5 4 2 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47487 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47233 * 120.00158 * 9 7 5 12 12 H 1.48508 * 109.46883 * 239.99963 * 9 7 5 13 13 C 1.53003 * 109.46755 * 119.99953 * 2 1 3 14 14 N 1.46894 * 109.47533 * 294.99652 * 13 2 1 15 15 C 1.46897 * 111.00411 * 180.02562 * 14 13 2 16 16 H 1.08998 * 110.28628 * 32.87337 * 15 14 13 17 17 C 1.54390 * 110.32300 * 270.64061 * 15 14 13 18 18 N 1.48559 * 104.59103 * 217.24886 * 17 15 14 19 19 C 1.46900 * 110.99837 * 159.03923 * 18 17 15 20 20 C 1.50700 * 109.47600 * 174.70874 * 19 18 17 21 21 C 1.38235 * 119.99710 * 269.72916 * 20 19 18 22 22 C 1.38237 * 119.99829 * 179.76074 * 21 20 19 23 23 C 1.38235 * 119.99913 * 0.50728 * 22 21 20 24 24 C 1.38229 * 120.00005 * 359.74350 * 23 22 21 25 25 C 1.38235 * 120.00172 * 89.99719 * 20 19 18 26 26 C 1.48561 * 104.22556 * 39.48534 * 18 17 15 27 27 C 1.54264 * 110.32597 * 155.00224 * 15 14 13 28 28 H 1.08993 * 110.32159 * 359.97438 * 27 15 14 29 29 C 1.53000 * 110.31986 * 237.78995 * 27 15 14 30 30 H 1.09000 * 109.47048 * 59.99887 * 1 2 3 31 31 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46743 * 300.00156 * 1 2 3 33 33 H 1.09000 * 109.47486 * 305.00460 * 4 2 1 34 34 H 1.09001 * 109.47362 * 184.99737 * 4 2 1 35 35 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.47422 * 55.00049 * 13 2 1 37 37 H 1.09005 * 109.46949 * 174.99658 * 13 2 1 38 38 H 1.00905 * 111.00040 * 56.04663 * 14 13 2 39 39 H 1.09007 * 110.40680 * 336.02578 * 17 15 14 40 40 H 1.08997 * 110.40924 * 98.47142 * 17 15 14 41 41 H 1.09007 * 109.47406 * 294.70737 * 19 18 17 42 42 H 1.09007 * 109.47292 * 54.70433 * 19 18 17 43 43 H 1.08001 * 120.00092 * 359.97438 * 21 20 19 44 44 H 1.08001 * 119.99930 * 180.22953 * 22 21 20 45 45 H 1.08000 * 119.99493 * 179.72057 * 23 22 21 46 46 H 1.08006 * 120.00272 * 179.97438 * 24 23 22 47 47 H 1.07998 * 119.99756 * 0.02562 * 25 20 19 48 48 H 1.08998 * 110.41095 * 201.74060 * 26 18 17 49 49 H 1.08996 * 110.51254 * 79.33828 * 26 18 17 50 50 H 1.09002 * 109.47369 * 60.00194 * 29 27 15 51 51 H 1.09005 * 109.46630 * 179.97438 * 29 27 15 52 52 H 1.08994 * 109.47582 * 299.99872 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0765 0.9720 -2.3759 7 6 1.9933 -0.4018 -3.7282 8 7 2.6764 -1.5189 -3.8511 9 14 1.4997 0.5634 -5.2495 10 1 0.7423 1.7743 -4.8434 11 1 2.7181 0.9682 -5.9958 12 1 0.6459 -0.2855 -6.1188 13 6 2.0399 -0.7213 1.2493 14 7 1.6514 0.0374 2.4457 15 6 2.1257 -0.6266 3.6672 16 1 3.0715 -1.1343 3.4784 17 6 1.0686 -1.6295 4.1773 18 7 1.1339 -1.5215 5.6576 19 6 -0.1040 -2.0140 6.2764 20 6 0.0480 -2.0107 7.7757 21 6 0.5371 -3.1298 8.4233 22 6 0.6812 -3.1250 9.7981 23 6 0.3262 -2.0049 10.5264 24 6 -0.1678 -0.8878 9.8793 25 6 -0.3070 -0.8906 8.5040 26 6 1.3138 -0.0686 5.9100 27 6 2.2870 0.4003 4.8071 28 1 2.0146 1.3969 4.4600 29 6 3.7251 0.3931 5.3291 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6053 -1.7199 -1.2951 34 1 3.1263 -0.7995 -1.2056 35 1 2.9236 -1.8418 -4.7316 36 1 1.6053 -1.7199 1.2952 37 1 3.1263 -0.7996 1.2056 38 1 0.6528 0.1793 2.4754 39 1 0.0772 -1.3519 3.8192 40 1 1.3195 -2.6412 3.8585 41 1 -0.9341 -1.3664 5.9940 42 1 -0.3026 -3.0295 5.9336 43 1 0.8100 -4.0066 7.8548 44 1 1.0668 -3.9980 10.3037 45 1 0.4345 -2.0029 11.6009 46 1 -0.4455 -0.0128 10.4483 47 1 -0.6936 -0.0181 7.9985 48 1 1.7493 0.0949 6.8958 49 1 0.3615 0.4547 5.8243 50 1 4.4071 0.6511 4.5189 51 1 3.8236 1.1230 6.1327 52 1 3.9695 -0.5995 5.7074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602617844.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:45 Heat of formation + Delta-G solvation = -6.100014 kcal Electronic energy + Delta-G solvation = -26103.781553 eV Core-core repulsion = 22680.149073 eV Total energy + Delta-G solvation = -3423.632480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.88699 -39.74769 -37.95628 -35.65433 -34.53509 -33.17764 -32.05434 -31.74923 -29.36348 -28.41556 -27.60436 -26.82739 -25.29864 -23.92298 -23.43419 -22.41072 -21.88298 -21.06409 -20.32071 -18.53865 -17.68529 -17.15336 -16.93390 -16.56749 -16.36580 -16.03100 -15.82065 -15.33803 -15.04957 -14.81374 -14.48622 -14.30386 -14.23751 -14.09266 -13.94845 -13.90396 -13.46861 -13.32422 -13.27679 -13.12796 -12.91105 -12.76230 -12.66018 -12.33286 -12.22047 -12.09576 -11.86771 -11.80253 -11.78236 -11.67929 -11.56403 -11.48089 -11.06587 -10.86560 -10.53956 -9.80166 -9.75793 -9.43623 -9.27384 -8.17416 -6.26370 0.45149 0.54534 1.39720 1.40325 1.53264 2.41930 2.75099 3.09044 3.16017 3.40881 3.58784 3.67819 3.93857 3.98043 4.08334 4.19300 4.22571 4.25163 4.28330 4.31882 4.36198 4.40507 4.45957 4.56312 4.63588 4.67950 4.72490 4.75170 4.79327 4.85021 4.88040 4.95634 4.99100 5.04762 5.13704 5.17182 5.20056 5.22948 5.27859 5.38150 5.41789 5.48746 5.55371 5.59514 5.66062 5.70596 5.79120 5.82446 5.90213 5.98928 6.14983 6.16392 6.32107 6.50390 6.90034 7.41849 8.94776 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031197 B = 0.002028 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.296943 B =13806.060261 C =13979.688858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.075 4.075 3 H 0.056 0.944 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.079 3.921 14 N -0.677 5.677 15 C 0.088 3.912 16 H 0.076 0.924 17 C 0.010 3.990 18 N -0.505 5.505 19 C 0.083 3.917 20 C -0.085 4.085 21 C -0.115 4.115 22 C -0.129 4.129 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.122 4.122 26 C 0.044 3.956 27 C -0.084 4.084 28 H 0.084 0.916 29 C -0.132 4.132 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.065 0.935 33 H -0.010 1.010 34 H -0.014 1.014 35 H 0.261 0.739 36 H 0.024 0.976 37 H 0.055 0.945 38 H 0.343 0.657 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.083 0.917 43 H 0.123 0.877 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.125 0.875 48 H 0.082 0.918 49 H 0.048 0.952 50 H 0.048 0.952 51 H 0.064 0.936 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.043 0.551 29.987 30.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.094 4.094 3 H 0.075 0.925 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.202 4.202 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.206 1.206 13 C -0.050 4.050 14 N -0.309 5.309 15 C -0.023 4.023 16 H 0.094 0.906 17 C -0.120 4.120 18 N -0.229 5.229 19 C -0.045 4.045 20 C -0.086 4.086 21 C -0.133 4.133 22 C -0.147 4.147 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.141 4.141 26 C -0.084 4.084 27 C -0.103 4.103 28 H 0.102 0.898 29 C -0.190 4.190 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.008 0.992 34 H 0.004 0.996 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.164 0.836 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.141 0.859 44 H 0.154 0.846 45 H 0.157 0.843 46 H 0.156 0.844 47 H 0.142 0.858 48 H 0.101 0.899 49 H 0.066 0.934 50 H 0.067 0.933 51 H 0.083 0.917 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.012 0.550 30.037 30.457 hybrid contribution -1.200 -0.348 -1.578 2.013 sum -6.212 0.202 28.459 29.130 Atomic orbital electron populations 1.21640 0.94986 1.00619 1.01039 1.21017 0.96182 0.98984 0.93243 0.92535 1.19005 0.94192 0.94566 0.92723 1.21678 1.34150 1.08642 0.92058 0.92059 1.25969 0.95354 0.96126 1.02706 1.70109 1.40392 1.22942 1.24184 0.85447 0.78039 0.78887 0.78976 1.18546 1.20622 1.20553 1.21846 0.99405 0.94297 0.89428 1.60655 1.19963 1.49465 1.00806 1.22414 0.97488 0.92855 0.89528 0.90614 1.23823 0.98414 1.00904 0.88824 1.65399 1.33856 1.16416 1.07232 1.21215 0.90862 1.01396 0.91009 1.19764 0.99563 0.94621 0.94643 1.21198 0.98819 0.98294 0.95017 1.21419 1.00031 0.99272 0.94009 1.21460 0.98856 0.93376 1.00968 1.21401 0.99555 0.99187 0.94431 1.21220 1.00425 0.97750 0.94673 1.23189 0.98264 0.87537 0.99371 1.21900 0.96179 0.99005 0.93233 0.89778 1.21707 0.94759 1.01814 1.00671 0.93644 0.94092 0.91577 0.99212 0.99580 0.92980 0.95814 0.92642 0.83633 0.93332 0.90643 0.93350 0.89873 0.85885 0.84580 0.84272 0.84393 0.85753 0.89926 0.93402 0.93264 0.91684 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 8.77 71.98 0.63 -3.87 16 2 C -0.08 -3.06 2.55 -10.79 -0.03 -3.09 16 3 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.03 1.73 4.45 29.85 0.13 1.86 16 5 C -0.53 -29.94 8.41 25.60 0.22 -29.73 16 6 H 0.06 3.35 7.05 -2.91 -0.02 3.33 16 7 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 8 N -0.94 -57.55 13.29 21.45 0.28 -57.27 16 9 Si 0.96 44.77 29.54 68.60 2.03 46.79 16 10 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 C 0.08 2.71 4.99 86.31 0.43 3.14 16 14 N -0.68 -18.55 6.22 -486.93 -3.03 -21.57 16 15 C 0.09 2.09 3.03 45.82 0.14 2.23 16 16 H 0.08 2.01 7.38 -2.39 -0.02 1.99 16 17 C 0.01 0.22 6.15 86.45 0.53 0.75 16 18 N -0.51 -9.96 5.36 -885.99 -4.75 -14.71 16 19 C 0.08 1.45 4.97 85.56 0.42 1.87 16 20 C -0.09 -1.48 5.10 -19.87 -0.10 -1.58 16 21 C -0.11 -1.93 9.70 22.27 0.22 -1.72 16 22 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 23 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 24 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 25 C -0.12 -1.90 8.73 22.27 0.19 -1.70 16 26 C 0.04 0.81 5.02 86.45 0.43 1.24 16 27 C -0.08 -1.71 3.44 -9.90 -0.03 -1.75 16 28 H 0.08 1.80 7.95 -2.39 -0.02 1.78 16 29 C -0.13 -2.58 8.90 71.98 0.64 -1.94 16 30 H 0.04 1.78 6.94 -2.39 -0.02 1.76 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.89 6.68 -2.39 -0.02 1.88 16 33 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 34 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 35 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.06 2.02 8.07 -2.38 -0.02 2.00 16 38 H 0.34 8.66 6.34 -89.69 -0.57 8.09 16 39 H 0.05 1.02 7.41 -2.38 -0.02 1.00 16 40 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.05 0.80 7.83 -2.38 -0.02 0.78 16 42 H 0.08 1.42 8.07 -2.38 -0.02 1.40 16 43 H 0.12 1.92 8.06 -2.91 -0.02 1.90 16 44 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 45 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 46 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 47 H 0.12 1.67 8.06 -2.91 -0.02 1.65 16 48 H 0.08 1.50 7.53 -2.39 -0.02 1.48 16 49 H 0.05 0.82 7.83 -2.39 -0.02 0.80 16 50 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 52 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -64.20 406.49 -0.22 -64.42 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.29 Total: 21.05 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 4.96 Total: -38.71 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -7.49 Total: -93.55 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -64.20 -0.22 -64.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602617844.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.318 kcal (2) G-P(sol) polarization free energy of solvation -64.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds