Wall clock time and date at job start Tue Mar 31 2020 11:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47434 * 2 1 4 4 C 1.53001 * 109.47225 * 239.99759 * 2 1 3 5 5 C 1.50703 * 109.46849 * 64.99798 * 4 2 1 6 6 H 1.08004 * 119.99775 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99912 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99936 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99909 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47014 * 60.00243 * 9 7 5 11 11 H 1.48497 * 109.46951 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47037 * 300.00317 * 9 7 5 13 13 C 1.53001 * 109.47202 * 120.00060 * 2 1 3 14 14 N 1.46902 * 109.47211 * 295.00032 * 13 2 1 15 15 C 1.46896 * 111.00121 * 180.02562 * 14 13 2 16 16 H 1.09003 * 110.28620 * 314.84069 * 15 14 13 17 17 C 1.54374 * 110.32675 * 76.97483 * 15 14 13 18 18 N 1.48557 * 104.59772 * 142.84839 * 17 15 14 19 19 C 1.46897 * 111.00299 * 200.95982 * 18 17 15 20 20 C 1.50695 * 109.47399 * 170.00050 * 19 18 17 21 21 C 1.38245 * 119.99947 * 90.00092 * 20 19 18 22 22 C 1.38230 * 119.99829 * 179.72472 * 21 20 19 23 23 C 1.38239 * 120.00334 * 0.25849 * 22 21 20 24 24 C 1.38244 * 119.99742 * 0.02562 * 23 22 21 25 25 C 1.38230 * 119.99939 * 359.97438 * 24 23 22 26 26 C 1.48557 * 104.22227 * 320.51624 * 18 17 15 27 27 C 1.54270 * 110.40711 * 192.66295 * 15 14 13 28 28 H 1.08993 * 110.32301 * 122.16517 * 27 15 14 29 29 C 1.52996 * 110.32602 * 0.05448 * 27 15 14 30 30 H 1.09000 * 109.46818 * 299.99984 * 1 2 3 31 31 H 1.09001 * 109.46863 * 59.99967 * 1 2 3 32 32 H 1.08991 * 109.46901 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47003 * 185.00089 * 4 2 1 34 34 H 1.09002 * 109.47160 * 305.00728 * 4 2 1 35 35 H 0.97001 * 119.99579 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.47354 * 175.00029 * 13 2 1 37 37 H 1.09002 * 109.47295 * 54.99460 * 13 2 1 38 38 H 1.00902 * 111.00036 * 56.03683 * 14 13 2 39 39 H 1.09003 * 110.41055 * 24.06579 * 17 15 14 40 40 H 1.09002 * 110.41075 * 261.63360 * 17 15 14 41 41 H 1.08996 * 109.47317 * 49.99640 * 19 18 17 42 42 H 1.09007 * 109.46818 * 290.00203 * 19 18 17 43 43 H 1.07997 * 119.99576 * 0.02562 * 21 20 19 44 44 H 1.07998 * 120.00035 * 180.27227 * 22 21 20 45 45 H 1.07998 * 120.00343 * 179.97438 * 23 22 21 46 46 H 1.07995 * 119.99518 * 179.97438 * 24 23 22 47 47 H 1.07996 * 120.00105 * 179.97438 * 25 24 23 48 48 H 1.09002 * 110.41247 * 158.25572 * 26 18 17 49 49 H 1.08998 * 110.41550 * 280.70569 * 26 18 17 50 50 H 1.08996 * 109.46825 * 66.22939 * 29 27 15 51 51 H 1.08991 * 109.47325 * 186.23327 * 29 27 15 52 52 H 1.09006 * 109.47242 * 306.23554 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3756 7 6 1.9933 -0.4018 -3.7283 8 7 2.6765 -1.5188 -3.8511 9 14 1.4996 0.5633 -5.2496 10 1 2.0918 1.9236 -5.1865 11 1 1.9945 -0.1368 -6.4620 12 1 0.0196 0.6699 -5.3095 13 6 2.0401 -0.7213 1.2492 14 7 1.6515 0.0374 2.4457 15 6 2.1259 -0.6265 3.6671 16 1 1.9223 -1.6963 3.6193 17 6 3.6368 -0.3763 3.8612 18 7 3.8050 -0.2208 5.3290 19 6 5.0476 0.4969 5.6434 20 6 5.0662 0.8513 7.1080 21 6 5.6139 -0.0268 8.0247 22 6 5.6361 0.3008 9.3674 23 6 5.1059 1.5040 9.7943 24 6 4.5530 2.3794 8.8783 25 6 4.5308 2.0519 7.5356 26 6 2.6160 0.5631 5.7516 27 6 1.4542 -0.0085 4.9108 28 1 0.9211 -0.7749 5.4733 29 6 0.4950 1.1092 4.4966 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1263 -0.7995 -1.2055 34 1 1.6054 -1.7198 -1.2952 35 1 2.9243 -1.8413 -4.7317 36 1 3.1264 -0.7995 1.2056 37 1 1.6054 -1.7198 1.2952 38 1 0.6529 0.1794 2.4753 39 1 3.9407 0.5344 3.3451 40 1 4.2127 -1.2287 3.5007 41 1 5.1012 1.4085 5.0483 42 1 5.9026 -0.1386 5.4124 43 1 6.0287 -0.9664 7.6911 44 1 6.0679 -0.3832 10.0830 45 1 5.1230 1.7598 10.8434 46 1 4.1385 3.3192 9.2119 47 1 4.0985 2.7356 6.8201 48 1 2.4231 0.4180 6.8146 49 1 2.7600 1.6209 5.5314 50 1 -0.3360 0.6846 3.9335 51 1 0.1131 1.6087 5.3869 52 1 1.0247 1.8305 3.8742 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602617846.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:48 Heat of formation + Delta-G solvation = 17.310275 kcal Electronic energy + Delta-G solvation = -26287.923762 eV Core-core repulsion = 22865.306429 eV Total energy + Delta-G solvation = -3422.617334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.12554 -38.96342 -36.52409 -34.56031 -32.79444 -31.49948 -31.39580 -31.12381 -28.07844 -26.97291 -26.64211 -25.25836 -24.34430 -22.84923 -22.47099 -21.57207 -20.81179 -19.39959 -18.87674 -16.97296 -16.56640 -16.21806 -15.85908 -15.56924 -15.46076 -15.02432 -14.53288 -14.32829 -13.96773 -13.84691 -13.60642 -13.57714 -13.07603 -12.76360 -12.57555 -12.49952 -12.38680 -12.13574 -11.96054 -11.81546 -11.57869 -11.36854 -11.19478 -11.08146 -11.04799 -10.88244 -10.81451 -10.68402 -10.61554 -10.32125 -10.14245 -9.70443 -9.16085 -9.14131 -9.07557 -8.95042 -8.53868 -8.31908 -8.13089 -5.96617 -3.97815 1.07985 1.16645 3.34754 3.39194 3.41566 3.46155 3.97730 4.38941 4.46534 4.54003 4.58523 4.63857 4.68167 4.76032 4.87480 4.97038 5.10314 5.25936 5.32414 5.38955 5.40262 5.41965 5.45514 5.48673 5.60653 5.71425 5.74121 5.76607 5.77932 5.81291 5.83897 5.94980 6.03539 6.06673 6.09312 6.19730 6.26248 6.28854 6.30111 6.38569 6.47071 6.56390 6.68367 6.75456 6.87018 6.97949 7.11313 7.18328 7.41952 7.67192 7.71165 7.87335 8.03636 8.47375 9.08320 9.65371 11.14804 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.025521 B = 0.002156 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.892611 B =12985.331118 C =13385.085866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 H 0.064 0.936 4 C 0.029 3.971 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.063 3.937 14 N -0.684 5.684 15 C 0.085 3.915 16 H 0.048 0.952 17 C 0.042 3.958 18 N -0.506 5.506 19 C 0.081 3.919 20 C -0.077 4.077 21 C -0.099 4.099 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.113 4.113 26 C 0.044 3.956 27 C -0.095 4.095 28 H 0.075 0.925 29 C -0.142 4.142 30 H 0.030 0.970 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.015 0.985 34 H 0.014 0.986 35 H 0.260 0.740 36 H 0.066 0.934 37 H 0.023 0.977 38 H 0.343 0.657 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.085 0.915 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.076 0.924 49 H 0.047 0.953 50 H 0.055 0.945 51 H 0.050 0.950 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.441 4.758 27.106 27.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 H 0.082 0.918 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.073 0.927 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.066 4.066 14 N -0.319 5.319 15 C -0.026 4.026 16 H 0.066 0.934 17 C -0.086 4.086 18 N -0.230 5.230 19 C -0.046 4.046 20 C -0.078 4.078 21 C -0.118 4.118 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.140 4.140 25 C -0.131 4.131 26 C -0.084 4.084 27 C -0.114 4.114 28 H 0.093 0.907 29 C -0.200 4.200 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.042 0.958 38 H 0.165 0.835 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.094 0.906 49 H 0.065 0.935 50 H 0.074 0.926 51 H 0.069 0.931 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.096 4.537 27.190 27.739 hybrid contribution -0.800 0.416 -1.269 1.557 sum 2.296 4.953 25.921 26.490 Atomic orbital electron populations 1.21740 0.96768 1.00418 1.00184 1.21212 0.94781 1.00017 0.94217 0.91752 1.19099 0.96097 0.95349 0.90352 1.21200 1.34695 1.08247 0.91008 0.92654 1.25025 0.95363 0.95109 0.99093 1.69955 1.38996 1.21213 1.23463 0.86690 0.78837 0.80140 0.82509 1.20290 1.21389 1.20334 1.22171 1.00319 0.94465 0.89633 1.60824 1.19954 1.50119 1.00978 1.22163 0.94185 0.96226 0.89991 0.93435 1.23179 0.96213 1.01816 0.87442 1.65512 1.01089 1.43351 1.13016 1.21236 0.94116 0.97589 0.91696 1.19789 0.98364 0.94362 0.95268 1.21055 0.98982 0.98960 0.92805 1.21155 1.00063 0.96990 0.95857 1.21148 0.98935 0.94605 0.99466 1.21114 1.00003 0.99614 0.93253 1.21113 0.99408 0.96626 0.95979 1.23135 0.89890 0.95855 0.99473 1.21986 0.95931 0.98031 0.95498 0.90702 1.21741 0.98762 0.98521 1.01001 0.95080 0.91878 0.94033 0.96708 0.96786 0.93054 0.91579 0.95839 0.83545 0.92140 0.90348 0.93465 0.89690 0.85908 0.86173 0.86316 0.86202 0.86310 0.90594 0.93475 0.92638 0.93068 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.78 37.16 0.33 -2.15 16 2 C -0.08 -1.69 2.55 -90.62 -0.23 -1.92 16 3 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.36 8.41 -34.44 -0.29 -14.65 16 6 H 0.06 1.51 7.06 -52.48 -0.37 1.13 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.06 1.07 4.98 -3.82 -0.02 1.06 16 14 N -0.68 -9.71 5.25 -105.26 -0.55 -10.26 16 15 C 0.09 1.08 3.34 -66.33 -0.22 0.85 16 16 H 0.05 0.64 8.02 -51.93 -0.42 0.22 16 17 C 0.04 0.52 5.64 -2.19 -0.01 0.51 16 18 N -0.51 -5.68 5.48 -231.42 -1.27 -6.95 16 19 C 0.08 0.82 5.22 -4.98 -0.03 0.79 16 20 C -0.08 -0.74 4.67 -104.62 -0.49 -1.23 16 21 C -0.10 -0.90 9.70 -39.58 -0.38 -1.28 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 23 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 24 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 25 C -0.11 -1.01 8.37 -39.58 -0.33 -1.34 16 26 C 0.04 0.47 4.49 -2.18 -0.01 0.46 16 27 C -0.10 -1.02 3.65 -89.23 -0.33 -1.35 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 C -0.14 -1.43 7.85 37.16 0.29 -1.13 16 30 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 31 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.07 1.17 7.74 -51.93 -0.40 0.77 16 37 H 0.02 0.41 8.11 -51.93 -0.42 -0.01 16 38 H 0.34 4.64 4.63 -39.29 -0.18 4.46 16 39 H 0.06 0.82 7.74 -51.93 -0.40 0.42 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.48 7.82 -51.93 -0.41 0.08 16 42 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 45 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 46 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 47 H 0.12 0.99 7.37 -52.49 -0.39 0.60 16 48 H 0.08 0.80 7.73 -51.93 -0.40 0.40 16 49 H 0.05 0.50 6.83 -51.93 -0.35 0.14 16 50 H 0.05 0.55 7.08 -51.93 -0.37 0.18 16 51 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 52 H 0.07 0.83 7.55 -51.93 -0.39 0.44 16 LS Contribution 399.46 15.07 6.02 6.02 Total: -1.00 -29.67 399.46 -12.64 -42.31 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -9.42 Total: 1.87 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -3.13 Total: -23.43 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: -1.08 Total: -43.50 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.67 -12.64 -42.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602617846.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.615 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds