Wall clock time and date at job start Tue Mar 31 2020 11:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47434 * 2 1 4 4 C 1.53001 * 109.47225 * 239.99759 * 2 1 3 5 5 C 1.50703 * 109.46849 * 64.99798 * 4 2 1 6 6 H 1.08004 * 119.99775 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99912 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99936 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99909 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47014 * 60.00243 * 9 7 5 11 11 H 1.48497 * 109.46951 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47037 * 300.00317 * 9 7 5 13 13 C 1.53001 * 109.47202 * 120.00060 * 2 1 3 14 14 N 1.46902 * 109.47211 * 295.00032 * 13 2 1 15 15 C 1.46896 * 111.00121 * 180.02562 * 14 13 2 16 16 H 1.09003 * 110.28620 * 314.84069 * 15 14 13 17 17 C 1.54374 * 110.32675 * 76.97483 * 15 14 13 18 18 N 1.48557 * 104.59772 * 142.84839 * 17 15 14 19 19 C 1.46897 * 111.00299 * 200.95982 * 18 17 15 20 20 C 1.50695 * 109.47399 * 170.00050 * 19 18 17 21 21 C 1.38245 * 119.99947 * 90.00092 * 20 19 18 22 22 C 1.38230 * 119.99829 * 179.72472 * 21 20 19 23 23 C 1.38239 * 120.00334 * 0.25849 * 22 21 20 24 24 C 1.38244 * 119.99742 * 0.02562 * 23 22 21 25 25 C 1.38230 * 119.99939 * 359.97438 * 24 23 22 26 26 C 1.48557 * 104.22227 * 320.51624 * 18 17 15 27 27 C 1.54270 * 110.40711 * 192.66295 * 15 14 13 28 28 H 1.08993 * 110.32301 * 122.16517 * 27 15 14 29 29 C 1.52996 * 110.32602 * 0.05448 * 27 15 14 30 30 H 1.09000 * 109.46818 * 299.99984 * 1 2 3 31 31 H 1.09001 * 109.46863 * 59.99967 * 1 2 3 32 32 H 1.08991 * 109.46901 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47003 * 185.00089 * 4 2 1 34 34 H 1.09002 * 109.47160 * 305.00728 * 4 2 1 35 35 H 0.97001 * 119.99579 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.47354 * 175.00029 * 13 2 1 37 37 H 1.09002 * 109.47295 * 54.99460 * 13 2 1 38 38 H 1.00902 * 111.00036 * 56.03683 * 14 13 2 39 39 H 1.09003 * 110.41055 * 24.06579 * 17 15 14 40 40 H 1.09002 * 110.41075 * 261.63360 * 17 15 14 41 41 H 1.08996 * 109.47317 * 49.99640 * 19 18 17 42 42 H 1.09007 * 109.46818 * 290.00203 * 19 18 17 43 43 H 1.07997 * 119.99576 * 0.02562 * 21 20 19 44 44 H 1.07998 * 120.00035 * 180.27227 * 22 21 20 45 45 H 1.07998 * 120.00343 * 179.97438 * 23 22 21 46 46 H 1.07995 * 119.99518 * 179.97438 * 24 23 22 47 47 H 1.07996 * 120.00105 * 179.97438 * 25 24 23 48 48 H 1.09002 * 110.41247 * 158.25572 * 26 18 17 49 49 H 1.08998 * 110.41550 * 280.70569 * 26 18 17 50 50 H 1.08996 * 109.46825 * 66.22939 * 29 27 15 51 51 H 1.08991 * 109.47325 * 186.23327 * 29 27 15 52 52 H 1.09006 * 109.47242 * 306.23554 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3756 7 6 1.9933 -0.4018 -3.7283 8 7 2.6765 -1.5188 -3.8511 9 14 1.4996 0.5633 -5.2496 10 1 2.0918 1.9236 -5.1865 11 1 1.9945 -0.1368 -6.4620 12 1 0.0196 0.6699 -5.3095 13 6 2.0401 -0.7213 1.2492 14 7 1.6515 0.0374 2.4457 15 6 2.1259 -0.6265 3.6671 16 1 1.9223 -1.6963 3.6193 17 6 3.6368 -0.3763 3.8612 18 7 3.8050 -0.2208 5.3290 19 6 5.0476 0.4969 5.6434 20 6 5.0662 0.8513 7.1080 21 6 5.6139 -0.0268 8.0247 22 6 5.6361 0.3008 9.3674 23 6 5.1059 1.5040 9.7943 24 6 4.5530 2.3794 8.8783 25 6 4.5308 2.0519 7.5356 26 6 2.6160 0.5631 5.7516 27 6 1.4542 -0.0085 4.9108 28 1 0.9211 -0.7749 5.4733 29 6 0.4950 1.1092 4.4966 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1263 -0.7995 -1.2055 34 1 1.6054 -1.7198 -1.2952 35 1 2.9243 -1.8413 -4.7317 36 1 3.1264 -0.7995 1.2056 37 1 1.6054 -1.7198 1.2952 38 1 0.6529 0.1794 2.4753 39 1 3.9407 0.5344 3.3451 40 1 4.2127 -1.2287 3.5007 41 1 5.1012 1.4085 5.0483 42 1 5.9026 -0.1386 5.4124 43 1 6.0287 -0.9664 7.6911 44 1 6.0679 -0.3832 10.0830 45 1 5.1230 1.7598 10.8434 46 1 4.1385 3.3192 9.2119 47 1 4.0985 2.7356 6.8201 48 1 2.4231 0.4180 6.8146 49 1 2.7600 1.6209 5.5314 50 1 -0.3360 0.6846 3.9335 51 1 0.1131 1.6087 5.3869 52 1 1.0247 1.8305 3.8742 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602617846.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:47 Heat of formation + Delta-G solvation = 1.286839 kcal Electronic energy + Delta-G solvation = -26288.618591 eV Core-core repulsion = 22865.306429 eV Total energy + Delta-G solvation = -3423.312162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.96394 -39.76385 -37.93896 -35.82263 -34.49214 -32.89359 -32.21391 -31.75906 -29.36900 -28.41885 -27.76173 -26.66749 -25.36231 -24.21054 -23.48320 -22.41867 -21.64135 -20.74102 -20.19581 -18.52953 -17.61923 -17.31777 -16.91005 -16.63639 -16.41826 -16.16921 -15.99804 -15.44864 -15.09032 -14.90432 -14.72922 -14.38444 -14.22299 -14.02413 -13.79136 -13.56656 -13.42777 -13.36386 -13.16121 -13.04826 -12.81823 -12.73550 -12.62230 -12.46831 -12.23379 -12.10105 -11.86611 -11.80103 -11.73820 -11.65418 -11.59937 -11.42789 -11.05865 -10.88410 -10.52716 -9.79293 -9.77133 -9.39331 -9.34363 -8.16926 -6.26107 0.43588 0.53811 1.40076 1.42899 1.50528 2.42123 2.74379 3.08828 3.16260 3.46779 3.54377 3.64797 3.87973 3.96599 4.08025 4.19443 4.20775 4.26382 4.30153 4.36128 4.38199 4.46663 4.55327 4.57637 4.63420 4.67338 4.74919 4.77853 4.79061 4.82504 4.86666 4.91281 4.97810 5.03843 5.11767 5.13803 5.19683 5.23450 5.26341 5.38836 5.46930 5.49043 5.54817 5.58673 5.65430 5.71324 5.78881 5.81300 5.89978 5.98876 6.13611 6.15285 6.31992 6.53508 6.89801 7.41947 8.94858 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.025521 B = 0.002156 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.892611 B =12985.331118 C =13385.085866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 H 0.056 0.944 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.077 3.923 14 N -0.677 5.677 15 C 0.084 3.916 16 H 0.042 0.958 17 C 0.045 3.955 18 N -0.509 5.509 19 C 0.084 3.916 20 C -0.091 4.091 21 C -0.113 4.113 22 C -0.128 4.128 23 C -0.126 4.126 24 C -0.127 4.127 25 C -0.122 4.122 26 C 0.051 3.949 27 C -0.090 4.090 28 H 0.083 0.917 29 C -0.138 4.138 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.039 0.961 33 H -0.015 1.015 34 H -0.012 1.012 35 H 0.261 0.739 36 H 0.054 0.946 37 H 0.020 0.980 38 H 0.350 0.650 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.125 0.875 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.138 0.862 47 H 0.121 0.879 48 H 0.079 0.921 49 H 0.047 0.953 50 H 0.059 0.941 51 H 0.067 0.933 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 6.139 28.832 29.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.093 4.093 3 H 0.075 0.925 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.191 1.191 13 C -0.052 4.052 14 N -0.312 5.312 15 C -0.026 4.026 16 H 0.060 0.940 17 C -0.084 4.084 18 N -0.233 5.233 19 C -0.044 4.044 20 C -0.091 4.091 21 C -0.131 4.131 22 C -0.146 4.146 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.141 4.141 26 C -0.077 4.077 27 C -0.109 4.109 28 H 0.101 0.899 29 C -0.196 4.196 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.003 0.997 34 H 0.007 0.993 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.039 0.961 38 H 0.172 0.828 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.143 0.857 44 H 0.156 0.844 45 H 0.159 0.841 46 H 0.156 0.844 47 H 0.139 0.861 48 H 0.097 0.903 49 H 0.066 0.934 50 H 0.078 0.922 51 H 0.086 0.914 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.938 5.931 28.937 29.603 hybrid contribution -0.392 -0.031 -1.723 1.767 sum 1.546 5.900 27.215 27.890 Atomic orbital electron populations 1.21650 0.94965 1.00634 1.01130 1.20999 0.96198 0.98926 0.93142 0.92508 1.18993 0.94116 0.94547 0.92761 1.21613 1.34464 1.08551 0.92034 0.92033 1.25974 0.95320 0.96137 1.02710 1.70098 1.40248 1.22960 1.24298 0.85554 0.78947 0.78740 0.78130 1.19305 1.21108 1.19148 1.21851 0.99474 0.94166 0.89738 1.60750 1.20478 1.49557 1.00453 1.22195 0.94471 0.95941 0.90041 0.94011 1.23075 0.96095 1.00852 0.88350 1.65506 1.01918 1.44062 1.11818 1.21212 0.93574 0.97209 0.92402 1.19782 0.99462 0.95065 0.94789 1.21205 0.99351 0.99162 0.93431 1.21430 0.99826 0.97584 0.95747 1.21478 0.98085 0.94235 1.00639 1.21392 0.99741 1.00455 0.92891 1.21222 0.99670 0.96503 0.96690 1.23092 0.89375 0.95704 0.99506 1.21983 0.96096 0.98462 0.94358 0.89888 1.21698 0.98428 0.97896 1.01599 0.91448 0.93552 0.94169 0.99675 0.99316 0.92983 0.92724 0.96141 0.82760 0.93474 0.91074 0.93940 0.89700 0.85687 0.84350 0.84097 0.84369 0.86095 0.90250 0.93445 0.92208 0.91400 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 8.78 71.98 0.63 -3.92 16 2 C -0.07 -3.01 2.55 -10.79 -0.03 -3.04 16 3 H 0.06 2.40 8.14 -2.39 -0.02 2.39 16 4 C 0.03 1.77 4.45 29.85 0.13 1.90 16 5 C -0.53 -30.03 8.41 25.60 0.22 -29.82 16 6 H 0.06 3.35 7.06 -2.91 -0.02 3.33 16 7 C 0.00 -0.25 5.46 84.66 0.46 0.22 16 8 N -0.94 -57.68 13.29 21.45 0.28 -57.39 16 9 Si 0.96 44.74 29.54 68.60 2.03 46.76 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 C 0.08 2.66 4.98 86.30 0.43 3.09 16 14 N -0.68 -18.64 5.25 -486.95 -2.56 -21.19 16 15 C 0.08 2.06 3.34 45.81 0.15 2.22 16 16 H 0.04 1.10 8.02 -2.39 -0.02 1.08 16 17 C 0.04 1.12 5.64 86.45 0.49 1.61 16 18 N -0.51 -11.25 5.48 -886.07 -4.86 -16.11 16 19 C 0.08 1.68 5.22 85.56 0.45 2.13 16 20 C -0.09 -1.68 4.67 -19.86 -0.09 -1.78 16 21 C -0.11 -1.95 9.70 22.27 0.22 -1.74 16 22 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 23 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 24 C -0.13 -1.81 10.05 22.27 0.22 -1.58 16 25 C -0.12 -2.06 8.37 22.27 0.19 -1.88 16 26 C 0.05 1.01 4.49 86.45 0.39 1.40 16 27 C -0.09 -1.78 3.65 -9.89 -0.04 -1.81 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 C -0.14 -2.45 7.85 71.98 0.57 -1.89 16 30 H 0.07 1.92 6.68 -2.39 -0.02 1.91 16 31 H 0.05 1.81 6.95 -2.39 -0.02 1.79 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 34 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 35 H 0.26 15.23 8.31 -92.71 -0.77 14.45 16 36 H 0.05 2.01 7.74 -2.39 -0.02 1.99 16 37 H 0.02 0.72 8.11 -2.39 -0.02 0.70 16 38 H 0.35 8.78 4.63 -89.69 -0.42 8.37 16 39 H 0.05 1.30 7.74 -2.39 -0.02 1.29 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.04 0.88 7.82 -2.39 -0.02 0.86 16 42 H 0.08 1.66 8.09 -2.38 -0.02 1.64 16 43 H 0.13 2.00 8.06 -2.91 -0.02 1.97 16 44 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 45 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 46 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 47 H 0.12 1.90 7.37 -2.91 -0.02 1.88 16 48 H 0.08 1.54 7.73 -2.39 -0.02 1.52 16 49 H 0.05 0.94 6.83 -2.39 -0.02 0.92 16 50 H 0.06 1.01 7.08 -2.39 -0.02 1.00 16 51 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.06 1.26 7.55 -2.38 -0.02 1.24 16 Total: -1.00 -64.46 399.46 0.17 -64.28 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.45 Total: 21.61 kcal Atomic # 6 Polarization: -42.80 SS G_CDS: 4.83 Total: -37.97 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -7.13 Total: -94.69 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -64.46 0.17 -64.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602617846.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.571 kcal (2) G-P(sol) polarization free energy of solvation -64.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds