Wall clock time and date at job start Tue Mar 31 2020 11:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47323 * 2 1 4 4 C 1.53000 * 109.47237 * 240.00094 * 2 1 3 5 5 C 1.50702 * 109.47314 * 65.00131 * 4 2 1 6 6 H 1.08002 * 120.00076 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00096 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00121 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00044 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46881 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47057 * 119.99867 * 9 7 5 12 12 H 1.48501 * 109.47031 * 239.99884 * 9 7 5 13 13 C 1.52999 * 109.47105 * 120.00276 * 2 1 3 14 14 N 1.46901 * 109.46818 * 295.00004 * 13 2 1 15 15 C 1.46907 * 110.99903 * 179.97438 * 14 13 2 16 16 H 1.08997 * 110.87361 * 328.84385 * 15 14 13 17 17 C 1.54911 * 110.98972 * 92.73058 * 15 14 13 18 18 N 1.47841 * 104.79435 * 155.16327 * 17 15 14 19 19 C 1.46907 * 110.99873 * 213.64023 * 18 17 15 20 20 C 1.50702 * 109.46818 * 190.71871 * 19 18 17 21 21 C 1.38234 * 120.00257 * 89.99881 * 20 19 18 22 22 C 1.38238 * 119.99675 * 180.25732 * 21 20 19 23 23 C 1.38228 * 120.00110 * 359.52133 * 22 21 20 24 24 C 1.38234 * 120.00090 * 0.43562 * 23 22 21 25 25 C 1.38235 * 119.99522 * 269.96894 * 20 19 18 26 26 C 1.47450 * 108.56898 * 335.90108 * 18 17 15 27 27 C 1.54325 * 107.22854 * 0.99370 * 26 18 17 28 28 H 1.09002 * 110.69993 * 263.72174 * 27 26 18 29 29 C 1.52998 * 110.70390 * 140.66741 * 27 26 18 30 30 H 1.09001 * 109.46973 * 300.00090 * 1 2 3 31 31 H 1.08998 * 109.46869 * 59.99927 * 1 2 3 32 32 H 1.08999 * 109.46955 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47314 * 185.00278 * 4 2 1 34 34 H 1.09005 * 109.47026 * 305.00456 * 4 2 1 35 35 H 0.97005 * 120.00399 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47305 * 174.99911 * 13 2 1 37 37 H 1.08995 * 109.47022 * 54.99702 * 13 2 1 38 38 H 1.00895 * 111.00333 * 56.04294 * 14 13 2 39 39 H 1.09003 * 110.37300 * 36.32932 * 17 15 14 40 40 H 1.09001 * 110.37251 * 273.99482 * 17 15 14 41 41 H 1.08993 * 109.47718 * 70.71317 * 19 18 17 42 42 H 1.08998 * 109.46552 * 310.71139 * 19 18 17 43 43 H 1.08002 * 119.99744 * 359.97115 * 21 20 19 44 44 H 1.08004 * 119.99577 * 179.72816 * 22 21 20 45 45 H 1.07998 * 119.99898 * 180.21654 * 23 22 21 46 46 H 1.08001 * 120.00324 * 179.78918 * 24 23 22 47 47 H 1.07996 * 120.00471 * 0.02562 * 25 20 19 48 48 H 1.08995 * 109.88777 * 120.39123 * 26 18 17 49 49 H 1.08996 * 109.88669 * 241.58839 * 26 18 17 50 50 H 1.08997 * 109.47604 * 61.45080 * 29 27 26 51 51 H 1.09003 * 109.47049 * 181.45302 * 29 27 26 52 52 H 1.08999 * 109.46898 * 301.44694 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3758 7 6 1.9925 -0.4022 -3.7283 8 7 2.6747 -1.5197 -3.8512 9 14 1.4977 0.5622 -5.2498 10 1 0.7404 1.7733 -4.8436 11 1 2.7155 0.9668 -5.9970 12 1 0.6435 -0.2872 -6.1181 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0374 2.4456 15 6 2.1247 -0.6272 3.6672 16 1 2.1543 -1.7087 3.5344 17 6 3.5102 -0.0817 4.0945 18 7 3.5818 -0.3314 5.5499 19 6 4.3398 0.7279 6.2291 20 6 4.6180 0.3136 7.6511 21 6 5.7709 -0.3863 7.9543 22 6 6.0233 -0.7710 9.2578 23 6 5.1278 -0.4471 10.2598 24 6 3.9754 0.2536 9.9568 25 6 3.7205 0.6340 8.6525 26 6 2.2084 -0.4206 6.0791 27 6 1.2462 -0.2408 4.8861 28 1 0.9136 0.7946 4.8121 29 6 0.0482 -1.1842 5.0104 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1263 -0.7995 -1.2056 34 1 1.6053 -1.7198 -1.2952 35 1 2.9221 -1.8427 -4.7319 36 1 3.1263 -0.7996 1.2056 37 1 1.6054 -1.7198 1.2951 38 1 0.6529 0.1793 2.4753 39 1 3.5771 0.9867 3.8890 40 1 4.3054 -0.6189 3.5776 41 1 3.7584 1.6497 6.2264 42 1 5.2827 0.8915 5.7073 43 1 6.4720 -0.6367 7.1719 44 1 6.9219 -1.3216 9.4939 45 1 5.3268 -0.7445 11.2787 46 1 3.2740 0.5037 10.7390 47 1 2.8198 1.1809 8.4157 48 1 2.0508 -1.3963 6.5387 49 1 2.0417 0.3685 6.8123 50 1 -0.5052 -0.9510 5.9199 51 1 -0.6040 -1.0591 4.1460 52 1 0.4004 -2.2149 5.0536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602617848.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:50 Heat of formation + Delta-G solvation = 9.524705 kcal Electronic energy + Delta-G solvation = -26021.088012 eV Core-core repulsion = 22598.133071 eV Total energy + Delta-G solvation = -3422.954941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.07157 -38.92996 -36.55815 -34.46163 -32.91488 -31.57095 -31.45121 -31.13055 -28.12547 -26.91020 -26.71293 -25.47975 -24.12154 -22.81083 -22.40199 -21.43542 -20.62612 -20.27056 -18.86038 -16.96912 -16.51906 -16.38865 -15.83319 -15.54330 -15.12465 -14.92464 -14.53643 -14.03106 -14.02306 -13.89793 -13.64661 -13.48725 -13.28586 -12.85086 -12.80770 -12.71244 -12.51690 -12.24091 -12.00900 -11.90700 -11.55652 -11.39443 -11.23493 -11.21155 -10.99297 -10.94297 -10.88195 -10.72898 -10.54870 -10.29825 -10.15864 -9.71562 -9.15497 -9.13638 -9.02892 -8.93237 -8.44814 -8.32553 -8.15476 -5.96895 -3.97999 1.09845 1.17589 3.32412 3.40022 3.43926 3.45516 3.94140 4.32435 4.43944 4.50605 4.55706 4.60984 4.68426 4.77480 4.84201 4.89737 5.05761 5.25374 5.28902 5.30755 5.33215 5.38899 5.40757 5.42720 5.46952 5.67662 5.74468 5.77087 5.78201 5.81197 5.82652 5.92994 5.96376 5.99614 6.06217 6.16359 6.21107 6.27213 6.28603 6.39263 6.47111 6.56340 6.74971 6.80717 6.89509 6.98532 7.10946 7.18024 7.39340 7.64128 7.71309 7.87068 8.03508 8.47284 9.08636 9.65399 11.14593 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026580 B = 0.002059 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.178302 B =13597.836157 C =14209.607039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.681 5.681 15 C 0.082 3.918 16 H 0.060 0.940 17 C 0.052 3.948 18 N -0.524 5.524 19 C 0.088 3.912 20 C -0.072 4.072 21 C -0.099 4.099 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.115 4.115 26 C 0.050 3.950 27 C -0.119 4.119 28 H 0.082 0.918 29 C -0.142 4.142 30 H 0.030 0.970 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.015 0.985 34 H 0.014 0.986 35 H 0.259 0.741 36 H 0.067 0.933 37 H 0.024 0.976 38 H 0.340 0.660 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.045 0.955 42 H 0.083 0.917 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.076 0.924 49 H 0.055 0.945 50 H 0.056 0.944 51 H 0.057 0.943 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.354 2.430 28.321 28.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.063 4.063 14 N -0.313 5.313 15 C -0.029 4.029 16 H 0.078 0.922 17 C -0.075 4.075 18 N -0.248 5.248 19 C -0.040 4.040 20 C -0.073 4.073 21 C -0.117 4.117 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.140 4.140 25 C -0.133 4.133 26 C -0.079 4.079 27 C -0.139 4.139 28 H 0.100 0.900 29 C -0.200 4.200 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.032 0.968 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.160 0.840 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.102 0.898 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.094 0.906 49 H 0.074 0.926 50 H 0.075 0.925 51 H 0.076 0.924 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.231 2.281 28.229 28.408 hybrid contribution -1.216 0.384 -1.000 1.621 sum 1.014 2.665 27.228 27.377 Atomic orbital electron populations 1.21737 0.96744 1.00406 1.00208 1.21222 0.94810 1.00068 0.94205 0.91693 1.19112 0.96148 0.95357 0.90361 1.21276 1.34518 1.08248 0.90982 0.92530 1.25029 0.95380 0.95105 0.99119 1.69976 1.39181 1.21208 1.23253 0.86576 0.78250 0.80109 0.83305 1.19771 1.21093 1.21138 1.22189 1.00359 0.94369 0.89400 1.60545 1.19533 1.50226 1.01024 1.22673 0.93968 0.96854 0.89437 0.92187 1.23030 0.97595 1.00496 0.86425 1.63624 1.13660 1.43785 1.03712 1.21211 0.99255 0.92395 0.91149 1.19781 0.94704 0.98091 0.94709 1.21053 0.97053 0.97206 0.96427 1.21160 0.99545 1.00159 0.93114 1.21133 0.94799 0.99097 0.99210 1.21101 0.97519 0.98996 0.96401 1.21078 0.98854 1.00503 0.92868 1.22900 0.87025 1.01802 0.96130 1.22570 0.95681 1.00472 0.95150 0.89952 1.21756 0.97244 0.99243 1.01754 0.95058 0.91874 0.94034 0.96651 0.96767 0.93162 0.91456 0.95757 0.84025 0.92278 0.90257 0.93671 0.89835 0.85936 0.86168 0.86345 0.86289 0.86440 0.90615 0.92619 0.92495 0.92441 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.77 37.16 0.33 -2.14 16 2 C -0.08 -1.71 2.55 -90.62 -0.23 -1.94 16 3 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.34 8.41 -34.44 -0.29 -14.63 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.73 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.07 1.12 5.01 -3.82 -0.02 1.10 16 14 N -0.68 -9.72 6.41 -104.47 -0.67 -10.39 16 15 C 0.08 1.01 2.82 -65.57 -0.19 0.83 16 16 H 0.06 0.81 7.72 -51.93 -0.40 0.41 16 17 C 0.05 0.64 6.38 -2.30 -0.01 0.62 16 18 N -0.52 -5.75 5.15 -232.68 -1.20 -6.94 16 19 C 0.09 0.85 4.75 -4.97 -0.02 0.83 16 20 C -0.07 -0.69 5.11 -104.62 -0.53 -1.22 16 21 C -0.10 -0.91 9.70 -39.58 -0.38 -1.29 16 22 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 23 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 24 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 25 C -0.11 -1.00 8.74 -39.58 -0.35 -1.34 16 26 C 0.05 0.49 5.86 -2.83 -0.02 0.48 16 27 C -0.12 -1.22 2.94 -88.80 -0.26 -1.48 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 29 C -0.14 -1.31 9.13 37.16 0.34 -0.97 16 30 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 31 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 38 H 0.34 4.63 6.69 -39.29 -0.26 4.36 16 39 H 0.06 0.75 7.81 -51.93 -0.41 0.35 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 42 H 0.08 0.78 8.02 -51.93 -0.42 0.37 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 45 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 46 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 47 H 0.12 0.89 6.91 -52.49 -0.36 0.53 16 48 H 0.08 0.78 7.82 -51.93 -0.41 0.38 16 49 H 0.06 0.50 5.50 -51.93 -0.29 0.22 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 52 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 LS Contribution 405.01 15.07 6.10 6.10 Total: -1.00 -29.87 405.01 -12.61 -42.47 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -9.50 Total: 1.56 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -3.05 Total: -23.24 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: -1.13 Total: -43.63 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -29.87 -12.61 -42.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602617848.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.997 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds