Wall clock time and date at job start Tue Mar 31 2020 11:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47323 * 2 1 4 4 C 1.53000 * 109.47237 * 240.00094 * 2 1 3 5 5 C 1.50702 * 109.47314 * 65.00131 * 4 2 1 6 6 H 1.08002 * 120.00076 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00096 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00121 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00044 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46881 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47057 * 119.99867 * 9 7 5 12 12 H 1.48501 * 109.47031 * 239.99884 * 9 7 5 13 13 C 1.52999 * 109.47105 * 120.00276 * 2 1 3 14 14 N 1.46901 * 109.46818 * 295.00004 * 13 2 1 15 15 C 1.46907 * 110.99903 * 179.97438 * 14 13 2 16 16 H 1.08997 * 110.87361 * 328.84385 * 15 14 13 17 17 C 1.54911 * 110.98972 * 92.73058 * 15 14 13 18 18 N 1.47841 * 104.79435 * 155.16327 * 17 15 14 19 19 C 1.46907 * 110.99873 * 213.64023 * 18 17 15 20 20 C 1.50702 * 109.46818 * 190.71871 * 19 18 17 21 21 C 1.38234 * 120.00257 * 89.99881 * 20 19 18 22 22 C 1.38238 * 119.99675 * 180.25732 * 21 20 19 23 23 C 1.38228 * 120.00110 * 359.52133 * 22 21 20 24 24 C 1.38234 * 120.00090 * 0.43562 * 23 22 21 25 25 C 1.38235 * 119.99522 * 269.96894 * 20 19 18 26 26 C 1.47450 * 108.56898 * 335.90108 * 18 17 15 27 27 C 1.54325 * 107.22854 * 0.99370 * 26 18 17 28 28 H 1.09002 * 110.69993 * 263.72174 * 27 26 18 29 29 C 1.52998 * 110.70390 * 140.66741 * 27 26 18 30 30 H 1.09001 * 109.46973 * 300.00090 * 1 2 3 31 31 H 1.08998 * 109.46869 * 59.99927 * 1 2 3 32 32 H 1.08999 * 109.46955 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47314 * 185.00278 * 4 2 1 34 34 H 1.09005 * 109.47026 * 305.00456 * 4 2 1 35 35 H 0.97005 * 120.00399 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47305 * 174.99911 * 13 2 1 37 37 H 1.08995 * 109.47022 * 54.99702 * 13 2 1 38 38 H 1.00895 * 111.00333 * 56.04294 * 14 13 2 39 39 H 1.09003 * 110.37300 * 36.32932 * 17 15 14 40 40 H 1.09001 * 110.37251 * 273.99482 * 17 15 14 41 41 H 1.08993 * 109.47718 * 70.71317 * 19 18 17 42 42 H 1.08998 * 109.46552 * 310.71139 * 19 18 17 43 43 H 1.08002 * 119.99744 * 359.97115 * 21 20 19 44 44 H 1.08004 * 119.99577 * 179.72816 * 22 21 20 45 45 H 1.07998 * 119.99898 * 180.21654 * 23 22 21 46 46 H 1.08001 * 120.00324 * 179.78918 * 24 23 22 47 47 H 1.07996 * 120.00471 * 0.02562 * 25 20 19 48 48 H 1.08995 * 109.88777 * 120.39123 * 26 18 17 49 49 H 1.08996 * 109.88669 * 241.58839 * 26 18 17 50 50 H 1.08997 * 109.47604 * 61.45080 * 29 27 26 51 51 H 1.09003 * 109.47049 * 181.45302 * 29 27 26 52 52 H 1.08999 * 109.46898 * 301.44694 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3758 7 6 1.9925 -0.4022 -3.7283 8 7 2.6747 -1.5197 -3.8512 9 14 1.4977 0.5622 -5.2498 10 1 0.7404 1.7733 -4.8436 11 1 2.7155 0.9668 -5.9970 12 1 0.6435 -0.2872 -6.1181 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0374 2.4456 15 6 2.1247 -0.6272 3.6672 16 1 2.1543 -1.7087 3.5344 17 6 3.5102 -0.0817 4.0945 18 7 3.5818 -0.3314 5.5499 19 6 4.3398 0.7279 6.2291 20 6 4.6180 0.3136 7.6511 21 6 5.7709 -0.3863 7.9543 22 6 6.0233 -0.7710 9.2578 23 6 5.1278 -0.4471 10.2598 24 6 3.9754 0.2536 9.9568 25 6 3.7205 0.6340 8.6525 26 6 2.2084 -0.4206 6.0791 27 6 1.2462 -0.2408 4.8861 28 1 0.9136 0.7946 4.8121 29 6 0.0482 -1.1842 5.0104 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1263 -0.7995 -1.2056 34 1 1.6053 -1.7198 -1.2952 35 1 2.9221 -1.8427 -4.7319 36 1 3.1263 -0.7996 1.2056 37 1 1.6054 -1.7198 1.2951 38 1 0.6529 0.1793 2.4753 39 1 3.5771 0.9867 3.8890 40 1 4.3054 -0.6189 3.5776 41 1 3.7584 1.6497 6.2264 42 1 5.2827 0.8915 5.7073 43 1 6.4720 -0.6367 7.1719 44 1 6.9219 -1.3216 9.4939 45 1 5.3268 -0.7445 11.2787 46 1 3.2740 0.5037 10.7390 47 1 2.8198 1.1809 8.4157 48 1 2.0508 -1.3963 6.5387 49 1 2.0417 0.3685 6.8123 50 1 -0.5052 -0.9510 5.9199 51 1 -0.6040 -1.0591 4.1460 52 1 0.4004 -2.2149 5.0536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602617848.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:50 Heat of formation + Delta-G solvation = -6.974069 kcal Electronic energy + Delta-G solvation = -26021.803452 eV Core-core repulsion = 22598.133071 eV Total energy + Delta-G solvation = -3423.670382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.87783 -39.70618 -37.99816 -35.71352 -34.50909 -33.07530 -32.19243 -31.74823 -29.42415 -28.42967 -27.64221 -26.87296 -25.26266 -24.05802 -23.42787 -22.18243 -21.61453 -21.24872 -20.42998 -18.51357 -17.62042 -17.43898 -16.71832 -16.59640 -16.29881 -16.13782 -15.82628 -15.33520 -15.04332 -14.79183 -14.66132 -14.46875 -14.22949 -14.09253 -13.97908 -13.67429 -13.51222 -13.40890 -13.28720 -13.16625 -12.92435 -12.75426 -12.65087 -12.38655 -12.24981 -12.05776 -12.01101 -11.84014 -11.74414 -11.67959 -11.48015 -11.46185 -11.05425 -10.87246 -10.54156 -9.76577 -9.68807 -9.42362 -9.23708 -8.17429 -6.26538 0.46222 0.55271 1.39810 1.40256 1.53304 2.41834 2.72429 3.07325 3.15960 3.41552 3.50999 3.72576 3.91202 3.95679 4.00527 4.19341 4.20727 4.24976 4.28711 4.35322 4.36126 4.46614 4.50961 4.53029 4.59195 4.64568 4.73133 4.74715 4.79454 4.85254 4.89196 4.95355 5.02035 5.03397 5.05627 5.15085 5.16696 5.21016 5.25229 5.36334 5.39485 5.48899 5.55837 5.59797 5.66735 5.73420 5.80369 5.89157 5.92356 6.06730 6.13623 6.17539 6.31468 6.49807 6.89831 7.41723 8.94788 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026580 B = 0.002059 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.178302 B =13597.836157 C =14209.607039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.075 4.075 3 H 0.057 0.943 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.062 0.938 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.080 3.920 14 N -0.676 5.676 15 C 0.080 3.920 16 H 0.049 0.951 17 C 0.057 3.943 18 N -0.532 5.532 19 C 0.090 3.910 20 C -0.086 4.086 21 C -0.116 4.116 22 C -0.130 4.130 23 C -0.129 4.129 24 C -0.127 4.127 25 C -0.122 4.122 26 C 0.053 3.947 27 C -0.109 4.109 28 H 0.086 0.914 29 C -0.140 4.140 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.040 0.960 33 H -0.015 1.015 34 H -0.011 1.011 35 H 0.261 0.739 36 H 0.054 0.946 37 H 0.022 0.978 38 H 0.347 0.653 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.080 0.920 43 H 0.122 0.878 44 H 0.136 0.864 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.128 0.872 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.074 0.926 51 H 0.055 0.945 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 3.572 30.082 30.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.094 4.094 3 H 0.075 0.925 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.202 4.202 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.205 1.205 13 C -0.049 4.049 14 N -0.309 5.309 15 C -0.030 4.030 16 H 0.067 0.933 17 C -0.072 4.072 18 N -0.256 5.256 19 C -0.037 4.037 20 C -0.086 4.086 21 C -0.134 4.134 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.145 4.145 25 C -0.141 4.141 26 C -0.074 4.074 27 C -0.128 4.128 28 H 0.104 0.896 29 C -0.197 4.197 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.004 0.996 34 H 0.007 0.993 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.168 0.832 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.140 0.860 44 H 0.154 0.846 45 H 0.158 0.842 46 H 0.158 0.842 47 H 0.145 0.855 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.093 0.907 51 H 0.074 0.926 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.883 3.433 30.012 30.221 hybrid contribution -0.743 -0.001 -1.470 1.647 sum 0.140 3.432 28.542 28.748 Atomic orbital electron populations 1.21642 0.94886 1.00654 1.01128 1.21013 0.96274 0.98961 0.93131 0.92474 1.19005 0.94158 0.94570 0.92759 1.21672 1.34293 1.08517 0.92021 0.92014 1.25976 0.95340 0.96134 1.02730 1.70112 1.40406 1.22943 1.24192 0.85441 0.78035 0.78886 0.78947 1.18509 1.20643 1.20534 1.21856 0.99421 0.94105 0.89505 1.60446 1.20076 1.49741 1.00589 1.22678 0.94818 0.96060 0.89469 0.93272 1.22903 0.97035 0.99804 0.87417 1.63587 1.14521 1.44543 1.02906 1.21190 0.98967 0.92133 0.91404 1.19814 0.95299 0.98914 0.94609 1.21200 0.97300 0.97815 0.97120 1.21416 1.00355 1.00154 0.92852 1.21460 0.94515 0.98557 1.00167 1.21409 0.97953 0.98509 0.96637 1.21249 0.99070 1.00651 0.93110 1.22892 0.86241 1.02167 0.96148 1.22510 0.95721 1.00867 0.93741 0.89587 1.21741 0.96761 0.98630 1.02584 0.91433 0.93584 0.94113 0.99637 0.99262 0.92978 0.92739 0.96003 0.83213 0.92835 0.91652 0.93277 0.90167 0.86043 0.84639 0.84236 0.84250 0.85462 0.90831 0.91309 0.90744 0.92584 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.77 71.98 0.63 -3.89 16 2 C -0.07 -3.06 2.55 -10.79 -0.03 -3.09 16 3 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.03 1.73 4.45 29.85 0.13 1.87 16 5 C -0.53 -29.99 8.41 25.60 0.22 -29.77 16 6 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 7 C 0.00 -0.28 5.46 84.65 0.46 0.19 16 8 N -0.94 -57.73 13.29 21.45 0.28 -57.44 16 9 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 10 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 C 0.08 2.79 5.01 86.30 0.43 3.22 16 14 N -0.68 -18.67 6.41 -484.44 -3.11 -21.78 16 15 C 0.08 1.95 2.82 46.30 0.13 2.08 16 16 H 0.05 1.33 7.72 -2.39 -0.02 1.31 16 17 C 0.06 1.38 6.38 86.78 0.55 1.94 16 18 N -0.53 -11.37 5.15 -890.06 -4.58 -15.95 16 19 C 0.09 1.71 4.75 85.56 0.41 2.12 16 20 C -0.09 -1.56 5.11 -19.87 -0.10 -1.66 16 21 C -0.12 -2.08 9.70 22.27 0.22 -1.86 16 22 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 23 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 24 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 25 C -0.12 -1.93 8.74 22.27 0.19 -1.73 16 26 C 0.05 0.98 5.86 86.65 0.51 1.49 16 27 C -0.11 -2.03 2.94 -9.61 -0.03 -2.06 16 28 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 29 C -0.14 -2.27 9.13 71.98 0.66 -1.61 16 30 H 0.07 1.93 6.68 -2.39 -0.02 1.91 16 31 H 0.05 1.80 6.95 -2.39 -0.02 1.78 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 34 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 35 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 36 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.02 0.77 8.08 -2.39 -0.02 0.75 16 38 H 0.35 8.74 6.69 -89.70 -0.60 8.13 16 39 H 0.05 1.36 7.81 -2.39 -0.02 1.34 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.05 0.88 7.90 -2.39 -0.02 0.86 16 42 H 0.08 1.53 8.02 -2.39 -0.02 1.51 16 43 H 0.12 2.08 8.06 -2.91 -0.02 2.06 16 44 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 45 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 46 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 47 H 0.13 1.67 6.91 -2.91 -0.02 1.65 16 48 H 0.07 1.40 7.82 -2.39 -0.02 1.38 16 49 H 0.07 1.09 5.50 -2.39 -0.01 1.08 16 50 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 51 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 Total: -1.00 -64.98 405.01 -0.06 -65.04 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.26 Total: 20.88 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 5.05 Total: -37.60 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -7.40 Total: -95.17 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.98 -0.06 -65.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602617848.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.070 kcal (2) G-P(sol) polarization free energy of solvation -64.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds