Wall clock time and date at job start Tue Mar 31 2020 11:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46962 * 2 1 4 4 C 1.53009 * 109.46902 * 240.00254 * 2 1 3 5 5 C 1.50695 * 109.46874 * 65.00048 * 4 2 1 6 6 H 1.07992 * 120.00439 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99734 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00181 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00288 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47059 * 89.99475 * 9 7 5 11 11 H 1.48497 * 109.47136 * 209.99812 * 9 7 5 12 12 H 1.48506 * 109.46834 * 329.99972 * 9 7 5 13 13 C 1.52998 * 109.47310 * 120.00429 * 2 1 3 14 14 N 1.46902 * 109.46932 * 294.99616 * 13 2 1 15 15 C 1.46897 * 111.00310 * 179.97438 * 14 13 2 16 16 H 1.09002 * 110.36622 * 35.73329 * 15 14 13 17 17 C 1.54378 * 110.32704 * 273.55243 * 15 14 13 18 18 N 1.48560 * 104.69549 * 217.30864 * 17 15 14 19 19 C 1.46906 * 110.99883 * 158.98156 * 18 17 15 20 20 C 1.50696 * 109.47289 * 169.99802 * 19 18 17 21 21 C 1.38233 * 119.99766 * 269.72567 * 20 19 18 22 22 C 1.38241 * 119.99652 * 179.76431 * 21 20 19 23 23 C 1.38226 * 120.00026 * 0.48813 * 22 21 20 24 24 C 1.38235 * 120.00472 * 359.78576 * 23 22 21 25 25 C 1.38236 * 119.99637 * 359.96015 * 24 23 22 26 26 C 1.48550 * 104.22569 * 39.42172 * 18 17 15 27 27 C 1.54378 * 104.59514 * 320.51840 * 26 18 17 28 28 H 1.09001 * 110.32336 * 264.95806 * 27 26 18 29 29 C 1.52998 * 110.32507 * 142.85031 * 27 26 18 30 30 H 1.09004 * 109.46962 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46698 * 299.99651 * 1 2 3 32 32 H 1.08994 * 109.46957 * 60.00001 * 1 2 3 33 33 H 1.08995 * 109.46749 * 185.00103 * 4 2 1 34 34 H 1.09001 * 109.46970 * 304.99744 * 4 2 1 35 35 H 0.96993 * 120.00491 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47282 * 175.00490 * 13 2 1 37 37 H 1.08993 * 109.47367 * 54.99456 * 13 2 1 38 38 H 1.00906 * 111.00158 * 56.04828 * 14 13 2 39 39 H 1.09002 * 110.41432 * 98.46782 * 17 15 14 40 40 H 1.09002 * 110.41130 * 336.14567 * 17 15 14 41 41 H 1.09005 * 109.46588 * 290.00054 * 19 18 17 42 42 H 1.09005 * 109.46946 * 49.99461 * 19 18 17 43 43 H 1.08002 * 120.00675 * 359.97438 * 21 20 19 44 44 H 1.08002 * 119.99900 * 180.24840 * 22 21 20 45 45 H 1.08006 * 120.00026 * 179.76688 * 23 22 21 46 46 H 1.07995 * 120.00501 * 179.97438 * 24 23 22 47 47 H 1.07996 * 120.00429 * 180.02562 * 25 24 23 48 48 H 1.09008 * 110.41398 * 79.29544 * 26 18 17 49 49 H 1.09002 * 110.41319 * 201.61724 * 26 18 17 50 50 H 1.09002 * 109.47480 * 61.45559 * 29 27 26 51 51 H 1.09009 * 109.46874 * 181.45322 * 29 27 26 52 52 H 1.08991 * 109.47347 * 301.45004 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9923 -0.4021 -3.7284 8 7 2.6754 -1.5192 -3.8513 9 14 1.4975 0.5623 -5.2497 10 1 2.5627 1.5418 -5.5830 11 1 1.3101 -0.3719 -6.3887 12 1 0.2263 1.2836 -4.9868 13 6 2.0401 -0.7213 1.2492 14 7 1.6515 0.0373 2.4456 15 6 2.1249 -0.6272 3.6672 16 1 3.0948 -1.0934 3.4939 17 6 1.0993 -1.6816 4.1359 18 7 1.1230 -1.5972 5.6189 19 6 -0.1088 -2.1506 6.1974 20 6 0.0495 -2.2753 7.6908 21 6 0.5495 -3.4422 8.2378 22 6 0.6993 -3.5548 9.6074 23 6 0.3397 -2.5043 10.4307 24 6 -0.1656 -1.3394 9.8842 25 6 -0.3105 -1.2248 8.5142 26 6 1.2366 -0.1430 5.9000 27 6 2.2169 0.3846 4.8304 28 1 3.2312 0.4146 5.2284 29 6 1.7905 1.7763 4.3590 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 3.1263 -0.7995 -1.2057 34 1 1.6054 -1.7198 -1.2953 35 1 2.9226 -1.8421 -4.7319 36 1 3.1264 -0.7995 1.2055 37 1 1.6054 -1.7198 1.2951 38 1 0.6529 0.1792 2.4754 39 1 1.3994 -2.6765 3.8068 40 1 0.1060 -1.4404 3.7572 41 1 -0.9446 -1.4873 5.9747 42 1 -0.3014 -3.1343 5.7690 43 1 0.8263 -4.2648 7.5949 44 1 1.0937 -4.4650 10.0345 45 1 0.4532 -2.5936 11.5010 46 1 -0.4469 -0.5188 10.5274 47 1 -0.7048 -0.3147 8.0871 48 1 0.2653 0.3412 5.7973 49 1 1.6381 0.0207 6.9001 50 1 1.8113 2.4676 5.2015 51 1 2.4764 2.1242 3.5865 52 1 0.7801 1.7287 3.9530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602617849.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:54 Heat of formation + Delta-G solvation = 14.475787 kcal Electronic energy + Delta-G solvation = -26180.433522 eV Core-core repulsion = 22757.693276 eV Total energy + Delta-G solvation = -3422.740246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.08448 -39.03330 -36.51400 -34.49575 -32.85522 -31.52243 -31.38074 -31.14098 -28.09998 -26.89744 -26.66609 -25.18024 -24.33030 -22.83174 -22.37939 -21.74887 -21.02055 -19.54334 -18.88784 -17.05675 -16.71996 -16.15691 -15.82266 -15.49876 -15.32292 -14.95904 -14.52747 -14.25889 -13.87651 -13.83663 -13.63535 -13.57523 -13.16801 -12.85776 -12.58738 -12.55662 -12.46006 -12.26484 -11.97308 -11.80990 -11.59548 -11.38643 -11.25769 -11.15463 -11.01893 -10.89696 -10.78351 -10.69927 -10.49258 -10.31445 -10.14860 -9.72742 -9.18209 -9.14998 -9.07908 -8.95241 -8.67611 -8.32437 -8.09901 -5.97098 -3.98243 1.07216 1.15321 3.33267 3.39552 3.42401 3.42917 3.93783 4.38606 4.42128 4.48675 4.54953 4.63958 4.73365 4.75514 4.86603 5.01588 5.05137 5.12600 5.23170 5.30842 5.36491 5.38131 5.38629 5.51517 5.61520 5.66250 5.72338 5.73890 5.77590 5.79396 5.83071 5.91081 6.05374 6.09451 6.18891 6.24901 6.27410 6.28071 6.34754 6.45191 6.46635 6.55390 6.63015 6.73109 6.80268 6.96488 7.10380 7.17551 7.39766 7.63842 7.70804 7.86726 8.03214 8.46993 9.08189 9.65084 11.14358 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031056 B = 0.002061 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.386840 B =13580.881273 C =13942.791008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.063 3.937 14 N -0.676 5.676 15 C 0.087 3.913 16 H 0.087 0.913 17 C 0.005 3.995 18 N -0.502 5.502 19 C 0.081 3.919 20 C -0.071 4.071 21 C -0.100 4.100 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.113 4.113 26 C 0.036 3.964 27 C -0.087 4.087 28 H 0.077 0.923 29 C -0.123 4.123 30 H 0.040 0.960 31 H 0.030 0.970 32 H 0.062 0.938 33 H 0.015 0.985 34 H 0.014 0.986 35 H 0.259 0.741 36 H 0.067 0.933 37 H 0.023 0.977 38 H 0.337 0.663 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.046 0.954 42 H 0.082 0.918 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.117 0.883 48 H 0.043 0.957 49 H 0.078 0.922 50 H 0.040 0.960 51 H 0.070 0.930 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 -0.705 27.868 28.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.307 5.307 15 C -0.024 4.024 16 H 0.105 0.895 17 C -0.125 4.125 18 N -0.226 5.226 19 C -0.047 4.047 20 C -0.072 4.072 21 C -0.118 4.118 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.140 4.140 25 C -0.132 4.132 26 C -0.092 4.092 27 C -0.107 4.107 28 H 0.096 0.904 29 C -0.180 4.180 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.033 0.967 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.041 0.959 38 H 0.157 0.843 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.135 0.865 48 H 0.061 0.939 49 H 0.096 0.904 50 H 0.059 0.941 51 H 0.089 0.911 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.391 -0.708 27.896 28.249 hybrid contribution -1.561 -0.013 -1.156 1.943 sum -5.951 -0.721 26.740 27.404 Atomic orbital electron populations 1.21737 0.96817 1.00337 1.00163 1.21218 0.94719 1.00094 0.94231 0.91666 1.19103 0.96135 0.95326 0.90363 1.21235 1.34617 1.08238 0.91000 0.92596 1.25027 0.95385 0.95089 0.99108 1.69962 1.39107 1.21194 1.23365 0.86630 0.78906 0.79803 0.82864 1.20725 1.21346 1.19950 1.22179 1.00329 0.94491 0.89525 1.60801 1.19444 1.49400 1.01012 1.22346 0.98050 0.91760 0.90258 0.89460 1.23947 0.98971 1.01563 0.88029 1.65371 1.34020 1.14647 1.08516 1.21219 0.91408 1.00909 0.91197 1.19713 0.98602 0.94129 0.94745 1.21040 0.98288 0.97547 0.94954 1.21154 1.00206 0.98892 0.93713 1.21141 0.99528 0.93810 0.99707 1.21109 0.99952 0.97893 0.95019 1.21054 1.00295 0.98220 0.93591 1.23287 0.98552 0.87609 0.99734 1.21958 0.99230 0.95653 0.93855 0.90436 1.21512 1.02035 0.94350 1.00149 0.94102 0.95144 0.91888 0.96665 0.96808 0.93110 0.91415 0.95857 0.84318 0.90088 0.93725 0.93631 0.89967 0.86030 0.86154 0.86302 0.86228 0.86463 0.93873 0.90406 0.94139 0.91135 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.77 37.16 0.33 -2.11 16 2 C -0.08 -1.67 2.55 -90.61 -0.23 -1.91 16 3 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.30 8.41 -34.44 -0.29 -14.59 16 6 H 0.06 1.52 7.05 -52.49 -0.37 1.15 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.06 1.06 4.98 -3.82 -0.02 1.04 16 14 N -0.68 -9.30 4.64 -105.17 -0.49 -9.79 16 15 C 0.09 1.06 3.35 -66.24 -0.22 0.84 16 16 H 0.09 1.14 7.86 -51.93 -0.41 0.73 16 17 C 0.00 0.05 6.04 -2.18 -0.01 0.04 16 18 N -0.50 -5.33 5.33 -231.41 -1.23 -6.56 16 19 C 0.08 0.76 4.98 -4.97 -0.02 0.74 16 20 C -0.07 -0.67 5.19 -104.63 -0.54 -1.21 16 21 C -0.10 -0.90 9.70 -39.58 -0.38 -1.29 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 23 C -0.12 -0.96 10.05 -39.59 -0.40 -1.35 16 24 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 25 C -0.11 -0.98 8.93 -39.58 -0.35 -1.34 16 26 C 0.04 0.36 5.25 -2.19 -0.01 0.35 16 27 C -0.09 -0.94 3.66 -89.14 -0.33 -1.27 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 C -0.12 -1.31 8.11 37.16 0.30 -1.01 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.46 6.68 -51.93 -0.35 0.12 16 32 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 33 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 37 H 0.02 0.39 8.11 -51.93 -0.42 -0.03 16 38 H 0.34 4.50 5.81 -39.29 -0.23 4.27 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.04 0.51 7.45 -51.93 -0.39 0.12 16 41 H 0.05 0.42 7.71 -51.93 -0.40 0.02 16 42 H 0.08 0.75 8.03 -51.93 -0.42 0.33 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 44 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 45 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 46 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 47 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 48 H 0.04 0.42 7.47 -51.92 -0.39 0.03 16 49 H 0.08 0.78 7.88 -51.93 -0.41 0.37 16 50 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.07 0.86 7.96 -51.92 -0.41 0.45 16 52 H 0.05 0.57 7.32 -51.93 -0.38 0.19 16 LS Contribution 404.03 15.07 6.09 6.09 Total: -1.00 -29.51 404.03 -12.68 -42.19 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -9.56 Total: 1.37 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -3.20 Total: -23.76 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: -0.98 Total: -42.59 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -29.51 -12.68 -42.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602617849.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.669 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds