Wall clock time and date at job start Tue Mar 31 2020 11:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46962 * 2 1 4 4 C 1.53009 * 109.46902 * 240.00254 * 2 1 3 5 5 C 1.50695 * 109.46874 * 65.00048 * 4 2 1 6 6 H 1.07992 * 120.00439 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99734 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00181 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00288 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47059 * 89.99475 * 9 7 5 11 11 H 1.48497 * 109.47136 * 209.99812 * 9 7 5 12 12 H 1.48506 * 109.46834 * 329.99972 * 9 7 5 13 13 C 1.52998 * 109.47310 * 120.00429 * 2 1 3 14 14 N 1.46902 * 109.46932 * 294.99616 * 13 2 1 15 15 C 1.46897 * 111.00310 * 179.97438 * 14 13 2 16 16 H 1.09002 * 110.36622 * 35.73329 * 15 14 13 17 17 C 1.54378 * 110.32704 * 273.55243 * 15 14 13 18 18 N 1.48560 * 104.69549 * 217.30864 * 17 15 14 19 19 C 1.46906 * 110.99883 * 158.98156 * 18 17 15 20 20 C 1.50696 * 109.47289 * 169.99802 * 19 18 17 21 21 C 1.38233 * 119.99766 * 269.72567 * 20 19 18 22 22 C 1.38241 * 119.99652 * 179.76431 * 21 20 19 23 23 C 1.38226 * 120.00026 * 0.48813 * 22 21 20 24 24 C 1.38235 * 120.00472 * 359.78576 * 23 22 21 25 25 C 1.38236 * 119.99637 * 359.96015 * 24 23 22 26 26 C 1.48550 * 104.22569 * 39.42172 * 18 17 15 27 27 C 1.54378 * 104.59514 * 320.51840 * 26 18 17 28 28 H 1.09001 * 110.32336 * 264.95806 * 27 26 18 29 29 C 1.52998 * 110.32507 * 142.85031 * 27 26 18 30 30 H 1.09004 * 109.46962 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46698 * 299.99651 * 1 2 3 32 32 H 1.08994 * 109.46957 * 60.00001 * 1 2 3 33 33 H 1.08995 * 109.46749 * 185.00103 * 4 2 1 34 34 H 1.09001 * 109.46970 * 304.99744 * 4 2 1 35 35 H 0.96993 * 120.00491 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47282 * 175.00490 * 13 2 1 37 37 H 1.08993 * 109.47367 * 54.99456 * 13 2 1 38 38 H 1.00906 * 111.00158 * 56.04828 * 14 13 2 39 39 H 1.09002 * 110.41432 * 98.46782 * 17 15 14 40 40 H 1.09002 * 110.41130 * 336.14567 * 17 15 14 41 41 H 1.09005 * 109.46588 * 290.00054 * 19 18 17 42 42 H 1.09005 * 109.46946 * 49.99461 * 19 18 17 43 43 H 1.08002 * 120.00675 * 359.97438 * 21 20 19 44 44 H 1.08002 * 119.99900 * 180.24840 * 22 21 20 45 45 H 1.08006 * 120.00026 * 179.76688 * 23 22 21 46 46 H 1.07995 * 120.00501 * 179.97438 * 24 23 22 47 47 H 1.07996 * 120.00429 * 180.02562 * 25 24 23 48 48 H 1.09008 * 110.41398 * 79.29544 * 26 18 17 49 49 H 1.09002 * 110.41319 * 201.61724 * 26 18 17 50 50 H 1.09002 * 109.47480 * 61.45559 * 29 27 26 51 51 H 1.09009 * 109.46874 * 181.45322 * 29 27 26 52 52 H 1.08991 * 109.47347 * 301.45004 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9923 -0.4021 -3.7284 8 7 2.6754 -1.5192 -3.8513 9 14 1.4975 0.5623 -5.2497 10 1 2.5627 1.5418 -5.5830 11 1 1.3101 -0.3719 -6.3887 12 1 0.2263 1.2836 -4.9868 13 6 2.0401 -0.7213 1.2492 14 7 1.6515 0.0373 2.4456 15 6 2.1249 -0.6272 3.6672 16 1 3.0948 -1.0934 3.4939 17 6 1.0993 -1.6816 4.1359 18 7 1.1230 -1.5972 5.6189 19 6 -0.1088 -2.1506 6.1974 20 6 0.0495 -2.2753 7.6908 21 6 0.5495 -3.4422 8.2378 22 6 0.6993 -3.5548 9.6074 23 6 0.3397 -2.5043 10.4307 24 6 -0.1656 -1.3394 9.8842 25 6 -0.3105 -1.2248 8.5142 26 6 1.2366 -0.1430 5.9000 27 6 2.2169 0.3846 4.8304 28 1 3.2312 0.4146 5.2284 29 6 1.7905 1.7763 4.3590 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 3.1263 -0.7995 -1.2057 34 1 1.6054 -1.7198 -1.2953 35 1 2.9226 -1.8421 -4.7319 36 1 3.1264 -0.7995 1.2055 37 1 1.6054 -1.7198 1.2951 38 1 0.6529 0.1792 2.4754 39 1 1.3994 -2.6765 3.8068 40 1 0.1060 -1.4404 3.7572 41 1 -0.9446 -1.4873 5.9747 42 1 -0.3014 -3.1343 5.7690 43 1 0.8263 -4.2648 7.5949 44 1 1.0937 -4.4650 10.0345 45 1 0.4532 -2.5936 11.5010 46 1 -0.4469 -0.5188 10.5274 47 1 -0.7048 -0.3147 8.0871 48 1 0.2653 0.3412 5.7973 49 1 1.6381 0.0207 6.9001 50 1 1.8113 2.4676 5.2015 51 1 2.4764 2.1242 3.5865 52 1 0.7801 1.7287 3.9530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602617849.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:53 Heat of formation + Delta-G solvation = -0.905723 kcal Electronic energy + Delta-G solvation = -26181.100514 eV Core-core repulsion = 22757.693276 eV Total energy + Delta-G solvation = -3423.407239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.89784 -39.78480 -37.92200 -35.72710 -34.49078 -32.98049 -32.12543 -31.74719 -29.37942 -28.44100 -27.62060 -26.59529 -25.32882 -24.13408 -23.43781 -22.57559 -21.73701 -20.81601 -20.23254 -18.56635 -17.67261 -17.41327 -16.68822 -16.55385 -16.31234 -16.13793 -15.88267 -15.33000 -15.08420 -14.85879 -14.68079 -14.24413 -14.19907 -14.13577 -13.93290 -13.62963 -13.42230 -13.33901 -13.22913 -13.17337 -12.84897 -12.78262 -12.56239 -12.41837 -12.23506 -12.01158 -11.96473 -11.81664 -11.78286 -11.58781 -11.48352 -11.37564 -11.05936 -10.86667 -10.52884 -9.80320 -9.75385 -9.45169 -9.24991 -8.16861 -6.25846 0.45049 0.54244 1.40292 1.41284 1.52050 2.42214 2.74278 3.09864 3.16485 3.41839 3.59538 3.69095 3.92659 3.97184 4.10880 4.19048 4.22090 4.25792 4.30330 4.30664 4.34984 4.45281 4.49032 4.56591 4.64745 4.69256 4.74886 4.76112 4.78626 4.85911 4.87059 4.93405 4.96305 5.05376 5.13734 5.19256 5.23670 5.27521 5.37453 5.41148 5.49484 5.55461 5.56072 5.60542 5.65821 5.71117 5.79952 5.82425 5.90809 5.99284 6.14903 6.16078 6.32616 6.51380 6.90463 7.42283 8.95089 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031056 B = 0.002061 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.386840 B =13580.881273 C =13942.791008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 H 0.057 0.943 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.078 3.922 14 N -0.669 5.669 15 C 0.086 3.914 16 H 0.075 0.925 17 C 0.011 3.989 18 N -0.509 5.509 19 C 0.083 3.917 20 C -0.085 4.085 21 C -0.116 4.116 22 C -0.130 4.130 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.122 4.122 26 C 0.044 3.956 27 C -0.083 4.083 28 H 0.077 0.923 29 C -0.117 4.117 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.044 0.956 33 H -0.015 1.015 34 H -0.011 1.011 35 H 0.261 0.739 36 H 0.055 0.945 37 H 0.022 0.978 38 H 0.343 0.657 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.081 0.919 43 H 0.122 0.878 44 H 0.136 0.864 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.125 0.875 48 H 0.050 0.950 49 H 0.080 0.920 50 H 0.055 0.945 51 H 0.053 0.947 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.677 0.523 29.473 30.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 H 0.075 0.925 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.187 1.187 13 C -0.051 4.051 14 N -0.300 5.300 15 C -0.025 4.025 16 H 0.094 0.906 17 C -0.119 4.119 18 N -0.233 5.233 19 C -0.044 4.044 20 C -0.086 4.086 21 C -0.134 4.134 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.141 4.141 26 C -0.084 4.084 27 C -0.102 4.102 28 H 0.095 0.905 29 C -0.175 4.175 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.004 0.996 34 H 0.007 0.993 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.164 0.836 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.100 0.900 43 H 0.140 0.860 44 H 0.154 0.846 45 H 0.158 0.842 46 H 0.157 0.843 47 H 0.143 0.857 48 H 0.069 0.931 49 H 0.099 0.901 50 H 0.074 0.926 51 H 0.072 0.928 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.644 0.530 29.525 30.064 hybrid contribution -1.142 -0.428 -1.572 1.990 sum -6.786 0.101 27.953 28.765 Atomic orbital electron populations 1.21637 0.95062 1.00545 1.00996 1.21003 0.96085 0.99001 0.93207 0.92461 1.18999 0.94155 0.94541 0.92760 1.21644 1.34349 1.08510 0.92058 0.92060 1.25966 0.95364 0.96112 1.02694 1.70100 1.40361 1.22929 1.24230 0.85505 0.79006 0.78348 0.78541 1.20006 1.20997 1.18687 1.21846 0.99410 0.94285 0.89553 1.60726 1.19872 1.48958 1.00484 1.22342 0.97703 0.92501 0.89916 0.90649 1.23814 0.98601 1.00777 0.88725 1.65361 1.34982 1.15149 1.07821 1.21205 0.90912 1.00877 0.91434 1.19772 0.99461 0.94669 0.94649 1.21199 0.98849 0.97720 0.95666 1.21419 1.00051 0.99814 0.93477 1.21463 0.98840 0.93529 1.00863 1.21408 0.99508 0.98610 0.95042 1.21221 1.00416 0.98355 0.94060 1.23219 0.98567 0.87189 0.99388 1.21921 0.99605 0.95362 0.93352 0.90483 1.21445 1.01395 0.94405 1.00239 0.94194 0.91584 0.93703 0.99630 0.99287 0.92997 0.92650 0.95946 0.83633 0.90770 0.93475 0.93190 0.90021 0.85957 0.84585 0.84242 0.84332 0.85668 0.93140 0.90137 0.92575 0.92790 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 8.77 71.98 0.63 -3.82 16 2 C -0.07 -2.98 2.55 -10.79 -0.03 -3.01 16 3 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.03 1.74 4.45 29.85 0.13 1.87 16 5 C -0.53 -29.87 8.41 25.60 0.22 -29.66 16 6 H 0.06 3.33 7.05 -2.91 -0.02 3.31 16 7 C 0.00 -0.25 5.46 84.66 0.46 0.22 16 8 N -0.94 -57.52 13.29 21.45 0.28 -57.24 16 9 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 13 C 0.08 2.63 4.98 86.30 0.43 3.06 16 14 N -0.67 -17.78 4.64 -486.64 -2.26 -20.04 16 15 C 0.09 2.03 3.35 45.87 0.15 2.18 16 16 H 0.08 1.97 7.86 -2.39 -0.02 1.95 16 17 C 0.01 0.23 6.04 86.45 0.52 0.75 16 18 N -0.51 -10.20 5.33 -886.04 -4.72 -14.92 16 19 C 0.08 1.48 4.98 85.55 0.43 1.91 16 20 C -0.09 -1.50 5.19 -19.87 -0.10 -1.60 16 21 C -0.12 -2.00 9.70 22.27 0.22 -1.79 16 22 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 23 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 24 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 25 C -0.12 -1.92 8.93 22.27 0.20 -1.72 16 26 C 0.04 0.80 5.25 86.45 0.45 1.25 16 27 C -0.08 -1.67 3.66 -9.84 -0.04 -1.70 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 C -0.12 -2.29 8.11 71.98 0.58 -1.71 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.87 6.68 -2.38 -0.02 1.85 16 32 H 0.04 1.75 6.95 -2.39 -0.02 1.73 16 33 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 34 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 36 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 37 H 0.02 0.76 8.11 -2.39 -0.02 0.74 16 38 H 0.34 8.48 5.81 -89.69 -0.52 7.96 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.05 1.00 7.45 -2.39 -0.02 0.98 16 41 H 0.05 0.84 7.71 -2.38 -0.02 0.82 16 42 H 0.08 1.43 8.03 -2.38 -0.02 1.41 16 43 H 0.12 1.98 8.06 -2.91 -0.02 1.95 16 44 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 45 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 46 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 47 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 48 H 0.05 0.86 7.47 -2.38 -0.02 0.84 16 49 H 0.08 1.45 7.88 -2.39 -0.02 1.43 16 50 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.05 1.25 7.96 -2.38 -0.02 1.23 16 52 H 0.05 1.01 7.32 -2.39 -0.02 0.99 16 Total: -1.00 -63.96 404.03 0.60 -63.36 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.34 Total: 20.64 kcal Atomic # 6 Polarization: -43.44 SS G_CDS: 4.93 Total: -38.51 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -6.69 Total: -92.21 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -63.96 0.60 -63.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602617849.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.458 kcal (2) G-P(sol) polarization free energy of solvation -63.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds