Wall clock time and date at job start Tue Mar 31 2020 11:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47097 * 2 1 4 4 C 1.53001 * 109.46938 * 239.99866 * 2 1 3 5 5 C 1.50693 * 109.47297 * 64.99919 * 4 2 1 6 6 H 1.07995 * 119.99899 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00171 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99785 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00176 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46956 * 60.00311 * 9 7 5 11 11 H 1.48499 * 109.47444 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47361 * 300.00377 * 9 7 5 13 13 C 1.52999 * 109.46758 * 120.00142 * 2 1 3 14 14 N 1.46899 * 109.47241 * 294.99738 * 13 2 1 15 15 C 1.46903 * 111.00450 * 180.02562 * 14 13 2 16 16 C 1.52995 * 109.47322 * 180.02562 * 15 14 13 17 17 H 1.09000 * 109.50059 * 305.07138 * 16 15 14 18 18 C 1.53114 * 109.53668 * 65.17089 * 16 15 14 19 19 C 1.53123 * 109.16198 * 177.61433 * 18 16 15 20 20 C 1.53035 * 109.27774 * 302.35270 * 19 18 16 21 21 N 1.46846 * 109.52744 * 59.17321 * 20 19 18 22 22 C 1.39674 * 110.99752 * 174.16243 * 21 20 19 23 23 C 1.38908 * 120.07546 * 123.67971 * 22 21 20 24 24 C 1.38107 * 119.93058 * 179.76455 * 23 22 21 25 25 C 1.38286 * 120.06914 * 0.51038 * 24 23 22 26 26 C 1.38293 * 120.14879 * 359.74285 * 25 24 23 27 27 C 1.38099 * 120.07611 * 0.02562 * 26 25 24 28 28 C 1.46844 * 111.19783 * 298.26158 * 21 20 19 29 29 H 1.09003 * 109.47352 * 60.00122 * 1 2 3 30 30 H 1.09000 * 109.47588 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47041 * 300.00289 * 1 2 3 32 32 H 1.09002 * 109.47292 * 185.00418 * 4 2 1 33 33 H 1.09005 * 109.46666 * 305.00089 * 4 2 1 34 34 H 0.97002 * 119.99958 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.46801 * 174.99703 * 13 2 1 36 36 H 1.09003 * 109.47446 * 54.99731 * 13 2 1 37 37 H 1.00903 * 110.99799 * 303.95905 * 14 13 2 38 38 H 1.09001 * 109.46890 * 59.99384 * 15 14 13 39 39 H 1.09002 * 109.46520 * 300.00011 * 15 14 13 40 40 H 1.09000 * 109.52528 * 297.52073 * 18 16 15 41 41 H 1.09001 * 109.52673 * 57.64776 * 18 16 15 42 42 H 1.08995 * 109.51026 * 182.40543 * 19 18 16 43 43 H 1.09011 * 109.49940 * 62.28508 * 19 18 16 44 44 H 1.09008 * 109.45841 * 299.15478 * 20 19 18 45 45 H 1.09003 * 109.46290 * 179.19461 * 20 19 18 46 46 H 1.08003 * 120.03404 * 0.02562 * 23 22 21 47 47 H 1.07992 * 119.96580 * 180.25093 * 24 23 22 48 48 H 1.07994 * 119.92589 * 179.76929 * 25 24 23 49 49 H 1.08001 * 119.95793 * 179.97438 * 26 25 24 50 50 H 1.07997 * 120.03438 * 180.02562 * 27 26 25 51 51 H 1.09000 * 109.46271 * 181.75698 * 28 21 20 52 52 H 1.09008 * 109.46154 * 301.73497 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 1 1.0806 0.9744 -2.3757 7 6 1.9932 -0.4019 -3.7283 8 7 2.6763 -1.5189 -3.8511 9 14 1.4996 0.5631 -5.2496 10 1 2.0918 1.9235 -5.1866 11 1 1.9955 -0.1363 -6.4621 12 1 0.0196 0.6699 -5.3096 13 6 2.0399 -0.7213 1.2492 14 7 1.6513 0.0374 2.4456 15 6 2.1256 -0.6266 3.6672 16 6 1.7022 0.1909 4.8892 17 1 2.0598 1.2151 4.7836 18 6 0.1751 0.1915 5.0007 19 6 -0.2367 0.9612 6.2588 20 6 0.4183 0.3165 7.4825 21 7 1.8784 0.3411 7.3278 22 6 2.5120 -0.1198 8.4841 23 6 3.3992 -1.1863 8.4137 24 6 4.0278 -1.6365 9.5581 25 6 3.7667 -1.0335 10.7749 26 6 2.8799 0.0251 10.8494 27 6 2.2516 0.4832 9.7081 28 6 2.3009 -0.4314 6.1526 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.1263 -0.7996 -1.2056 33 1 1.6052 -1.7199 -1.2951 34 1 2.9235 -1.8419 -4.7317 35 1 3.1262 -0.7996 1.2056 36 1 1.6052 -1.7198 1.2952 37 1 1.9881 0.9873 2.3966 38 1 3.2125 -0.7039 3.6401 39 1 1.6918 -1.6246 3.7300 40 1 -0.2541 0.6732 4.1222 41 1 -0.1858 -0.8349 5.0662 42 1 -1.3208 0.9288 6.3668 43 1 0.0905 1.9976 6.1747 44 1 0.0800 -0.7157 7.5739 45 1 0.1386 0.8708 8.3784 46 1 3.6005 -1.6603 7.4643 47 1 4.7207 -2.4630 9.5034 48 1 4.2566 -1.3898 11.6689 49 1 2.6780 0.4935 11.8013 50 1 1.5596 1.3102 9.7670 51 1 3.3885 -0.4204 6.0826 52 1 1.9536 -1.4601 6.2502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602641196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:14 Heat of formation + Delta-G solvation = 6.497277 kcal Electronic energy + Delta-G solvation = -25864.799016 eV Core-core repulsion = 22441.712796 eV Total energy + Delta-G solvation = -3423.086220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.68383 -38.43031 -36.83785 -34.82555 -33.33017 -32.30021 -31.50132 -30.58455 -29.25867 -26.96356 -26.08405 -24.93018 -24.32544 -22.93587 -22.09839 -21.78566 -21.07130 -19.94287 -18.98006 -17.86589 -16.32230 -16.06381 -15.82369 -15.42426 -15.25313 -14.85061 -14.67103 -14.39050 -14.28585 -14.00386 -13.89755 -13.76370 -13.43385 -13.16608 -12.82066 -12.66006 -12.30361 -12.15289 -11.84697 -11.72705 -11.53610 -11.38811 -11.33805 -11.19470 -10.83672 -10.82847 -10.77239 -10.61354 -10.48311 -10.27536 -10.17995 -9.93047 -9.68118 -9.23051 -9.12768 -8.94660 -8.31527 -8.11208 -8.08619 -5.96403 -3.97522 1.09813 1.11548 3.29110 3.35213 3.39500 3.42052 3.59422 4.34366 4.45591 4.49153 4.58390 4.67342 4.71496 4.75020 4.85298 4.97729 5.08112 5.13425 5.13879 5.22860 5.28387 5.35420 5.39273 5.44724 5.47749 5.54735 5.64033 5.67766 5.75158 5.78620 5.85093 5.92920 5.96012 6.04665 6.13254 6.16960 6.25876 6.27286 6.30664 6.43286 6.50196 6.56600 6.70043 6.73949 7.02373 7.04106 7.19524 7.21478 7.38038 7.65768 7.71299 7.86899 8.03822 8.47930 9.08685 9.65680 11.15079 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031561 B = 0.001902 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.949911 B =14714.408998 C =15353.136147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.684 5.684 15 C 0.064 3.936 16 C -0.081 4.081 17 H 0.078 0.922 18 C -0.108 4.108 19 C -0.121 4.121 20 C 0.060 3.940 21 N -0.488 5.488 22 C 0.117 3.883 23 C -0.173 4.173 24 C -0.093 4.093 25 C -0.152 4.152 26 C -0.096 4.096 27 C -0.143 4.143 28 C 0.057 3.943 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.012 0.988 33 H 0.016 0.984 34 H 0.260 0.740 35 H 0.023 0.977 36 H 0.065 0.935 37 H 0.337 0.663 38 H 0.026 0.974 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.042 0.958 45 H 0.078 0.922 46 H 0.127 0.873 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.122 0.878 50 H 0.123 0.877 51 H 0.080 0.920 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 1.839 30.014 30.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.315 5.315 15 C -0.066 4.066 16 C -0.100 4.100 17 H 0.096 0.904 18 C -0.146 4.146 19 C -0.159 4.159 20 C -0.065 4.065 21 N -0.203 5.203 22 C 0.019 3.981 23 C -0.194 4.194 24 C -0.112 4.112 25 C -0.171 4.171 26 C -0.115 4.115 27 C -0.164 4.164 28 C -0.070 4.070 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.083 0.917 37 H 0.154 0.846 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.145 0.855 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.140 0.860 50 H 0.141 0.859 51 H 0.099 0.901 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.946 1.941 29.756 29.883 hybrid contribution 0.731 -0.127 -0.866 1.141 sum -1.215 1.814 28.890 28.973 Atomic orbital electron populations 1.21579 0.95730 1.00500 1.00100 1.21196 0.95988 0.98900 0.94050 0.92862 1.19116 0.95877 0.95559 0.90464 1.21203 1.34639 1.08279 0.91009 0.92620 1.25026 0.95353 0.95118 0.99103 1.69956 1.39052 1.21227 1.23457 0.86683 0.78889 0.80089 0.82473 1.20331 1.21391 1.20273 1.22140 0.97109 0.97678 0.89480 1.60512 1.63899 1.05708 1.01348 1.21906 0.97001 0.98082 0.89646 1.21183 0.96251 1.00223 0.92384 0.90350 1.21544 0.94776 1.00386 0.97881 1.21678 0.99689 1.00474 0.94025 1.22255 0.84598 1.00091 0.99603 1.58961 1.07464 1.52046 1.01787 1.19017 0.96322 0.92533 0.90265 1.21379 1.01453 0.97096 0.99491 1.21026 0.98547 0.99210 0.92428 1.21065 1.00241 0.98034 0.97747 1.21010 0.96124 0.96436 0.97939 1.20793 1.02963 1.01277 0.91347 1.22289 1.00588 0.95078 0.89047 0.92840 0.94243 0.93943 0.96979 0.96603 0.93064 0.95858 0.91659 0.84583 0.95558 0.91286 0.89886 0.92422 0.91135 0.91018 0.93974 0.90350 0.85533 0.86131 0.86329 0.86044 0.85869 0.90141 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 2 C -0.08 -1.67 2.48 -90.62 -0.22 -1.90 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.06 1.10 5.07 -3.83 -0.02 1.08 16 14 N -0.68 -9.42 5.47 -113.78 -0.62 -10.04 16 15 C 0.06 0.74 5.08 -3.83 -0.02 0.72 16 16 C -0.08 -0.81 2.49 -90.55 -0.23 -1.03 16 17 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.11 -1.05 5.15 -26.61 -0.14 -1.19 16 19 C -0.12 -1.01 6.09 -26.65 -0.16 -1.17 16 20 C 0.06 0.50 5.26 -3.84 -0.02 0.48 16 21 N -0.49 -4.67 4.70 -171.15 -0.80 -5.48 16 22 C 0.12 1.13 5.64 -83.79 -0.47 0.66 16 23 C -0.17 -1.60 8.82 -39.38 -0.35 -1.95 16 24 C -0.09 -0.77 10.04 -39.61 -0.40 -1.17 16 25 C -0.15 -1.17 10.04 -39.54 -0.40 -1.57 16 26 C -0.10 -0.75 10.04 -39.61 -0.40 -1.15 16 27 C -0.14 -1.26 9.16 -39.38 -0.36 -1.62 16 28 C 0.06 0.54 3.43 -3.84 -0.01 0.52 16 29 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.34 4.48 8.73 -39.29 -0.34 4.14 16 38 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.92 7.84 -51.93 -0.41 0.51 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 44 H 0.04 0.37 8.14 -51.92 -0.42 -0.06 16 45 H 0.08 0.59 6.72 -51.93 -0.35 0.24 16 46 H 0.13 1.07 5.81 -52.48 -0.30 0.77 16 47 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 48 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 49 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 50 H 0.12 0.94 7.17 -52.49 -0.38 0.56 16 51 H 0.08 0.75 7.01 -51.93 -0.36 0.39 16 52 H 0.05 0.43 7.71 -51.92 -0.40 0.03 16 LS Contribution 401.37 15.07 6.05 6.05 Total: -1.00 -30.01 401.37 -12.62 -42.63 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -9.58 Total: 0.39 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -3.38 Total: -23.96 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: -0.69 Total: -41.88 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.01 -12.62 -42.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602641196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.123 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds