Wall clock time and date at job start Tue Mar 31 2020 11:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47097 * 2 1 4 4 C 1.53001 * 109.46938 * 239.99866 * 2 1 3 5 5 C 1.50693 * 109.47297 * 64.99919 * 4 2 1 6 6 H 1.07995 * 119.99899 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00171 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99785 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00176 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46956 * 60.00311 * 9 7 5 11 11 H 1.48499 * 109.47444 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47361 * 300.00377 * 9 7 5 13 13 C 1.52999 * 109.46758 * 120.00142 * 2 1 3 14 14 N 1.46899 * 109.47241 * 294.99738 * 13 2 1 15 15 C 1.46903 * 111.00450 * 180.02562 * 14 13 2 16 16 C 1.52995 * 109.47322 * 180.02562 * 15 14 13 17 17 H 1.09000 * 109.50059 * 305.07138 * 16 15 14 18 18 C 1.53114 * 109.53668 * 65.17089 * 16 15 14 19 19 C 1.53123 * 109.16198 * 177.61433 * 18 16 15 20 20 C 1.53035 * 109.27774 * 302.35270 * 19 18 16 21 21 N 1.46846 * 109.52744 * 59.17321 * 20 19 18 22 22 C 1.39674 * 110.99752 * 174.16243 * 21 20 19 23 23 C 1.38908 * 120.07546 * 123.67971 * 22 21 20 24 24 C 1.38107 * 119.93058 * 179.76455 * 23 22 21 25 25 C 1.38286 * 120.06914 * 0.51038 * 24 23 22 26 26 C 1.38293 * 120.14879 * 359.74285 * 25 24 23 27 27 C 1.38099 * 120.07611 * 0.02562 * 26 25 24 28 28 C 1.46844 * 111.19783 * 298.26158 * 21 20 19 29 29 H 1.09003 * 109.47352 * 60.00122 * 1 2 3 30 30 H 1.09000 * 109.47588 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47041 * 300.00289 * 1 2 3 32 32 H 1.09002 * 109.47292 * 185.00418 * 4 2 1 33 33 H 1.09005 * 109.46666 * 305.00089 * 4 2 1 34 34 H 0.97002 * 119.99958 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.46801 * 174.99703 * 13 2 1 36 36 H 1.09003 * 109.47446 * 54.99731 * 13 2 1 37 37 H 1.00903 * 110.99799 * 303.95905 * 14 13 2 38 38 H 1.09001 * 109.46890 * 59.99384 * 15 14 13 39 39 H 1.09002 * 109.46520 * 300.00011 * 15 14 13 40 40 H 1.09000 * 109.52528 * 297.52073 * 18 16 15 41 41 H 1.09001 * 109.52673 * 57.64776 * 18 16 15 42 42 H 1.08995 * 109.51026 * 182.40543 * 19 18 16 43 43 H 1.09011 * 109.49940 * 62.28508 * 19 18 16 44 44 H 1.09008 * 109.45841 * 299.15478 * 20 19 18 45 45 H 1.09003 * 109.46290 * 179.19461 * 20 19 18 46 46 H 1.08003 * 120.03404 * 0.02562 * 23 22 21 47 47 H 1.07992 * 119.96580 * 180.25093 * 24 23 22 48 48 H 1.07994 * 119.92589 * 179.76929 * 25 24 23 49 49 H 1.08001 * 119.95793 * 179.97438 * 26 25 24 50 50 H 1.07997 * 120.03438 * 180.02562 * 27 26 25 51 51 H 1.09000 * 109.46271 * 181.75698 * 28 21 20 52 52 H 1.09008 * 109.46154 * 301.73497 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 1 1.0806 0.9744 -2.3757 7 6 1.9932 -0.4019 -3.7283 8 7 2.6763 -1.5189 -3.8511 9 14 1.4996 0.5631 -5.2496 10 1 2.0918 1.9235 -5.1866 11 1 1.9955 -0.1363 -6.4621 12 1 0.0196 0.6699 -5.3096 13 6 2.0399 -0.7213 1.2492 14 7 1.6513 0.0374 2.4456 15 6 2.1256 -0.6266 3.6672 16 6 1.7022 0.1909 4.8892 17 1 2.0598 1.2151 4.7836 18 6 0.1751 0.1915 5.0007 19 6 -0.2367 0.9612 6.2588 20 6 0.4183 0.3165 7.4825 21 7 1.8784 0.3411 7.3278 22 6 2.5120 -0.1198 8.4841 23 6 3.3992 -1.1863 8.4137 24 6 4.0278 -1.6365 9.5581 25 6 3.7667 -1.0335 10.7749 26 6 2.8799 0.0251 10.8494 27 6 2.2516 0.4832 9.7081 28 6 2.3009 -0.4314 6.1526 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.1263 -0.7996 -1.2056 33 1 1.6052 -1.7199 -1.2951 34 1 2.9235 -1.8419 -4.7317 35 1 3.1262 -0.7996 1.2056 36 1 1.6052 -1.7198 1.2952 37 1 1.9881 0.9873 2.3966 38 1 3.2125 -0.7039 3.6401 39 1 1.6918 -1.6246 3.7300 40 1 -0.2541 0.6732 4.1222 41 1 -0.1858 -0.8349 5.0662 42 1 -1.3208 0.9288 6.3668 43 1 0.0905 1.9976 6.1747 44 1 0.0800 -0.7157 7.5739 45 1 0.1386 0.8708 8.3784 46 1 3.6005 -1.6603 7.4643 47 1 4.7207 -2.4630 9.5034 48 1 4.2566 -1.3898 11.6689 49 1 2.6780 0.4935 11.8013 50 1 1.5596 1.3102 9.7670 51 1 3.3885 -0.4204 6.0826 52 1 1.9536 -1.4601 6.2502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602641196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:13 Heat of formation + Delta-G solvation = -8.991276 kcal Electronic energy + Delta-G solvation = -25865.470650 eV Core-core repulsion = 22441.712796 eV Total energy + Delta-G solvation = -3423.757854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.36459 -39.20665 -38.13552 -36.10900 -34.64716 -33.70926 -32.46441 -31.44145 -29.92676 -28.87022 -27.33752 -25.87314 -25.50401 -24.16095 -23.33513 -22.45171 -21.85162 -20.92210 -20.41324 -18.56664 -18.44071 -16.77587 -16.68984 -16.48208 -16.43062 -16.00910 -15.73182 -15.46629 -15.37924 -15.09793 -14.80770 -14.57991 -14.37286 -14.24541 -13.98884 -13.86996 -13.44270 -13.35498 -13.13822 -13.02228 -12.79805 -12.70622 -12.55019 -12.31256 -12.19796 -12.08471 -11.99999 -11.86132 -11.63949 -11.49673 -11.38841 -11.22151 -11.07688 -10.84554 -10.59921 -10.52590 -9.84632 -9.28400 -8.76688 -8.17011 -6.26182 0.47306 0.49853 1.40374 1.43188 1.50834 2.42310 2.61453 2.93060 3.16210 3.32106 3.75369 3.80251 3.96309 4.05437 4.09103 4.13635 4.23451 4.28704 4.32023 4.36188 4.40002 4.53377 4.55729 4.56095 4.59466 4.63390 4.68077 4.75735 4.80248 4.87859 4.91918 4.96000 4.99202 5.03492 5.09132 5.16484 5.21264 5.29816 5.37643 5.45277 5.47754 5.51473 5.52792 5.54052 5.57673 5.67325 5.82393 5.89319 5.89623 6.03586 6.11790 6.32126 6.37702 6.52365 6.89792 7.41952 8.94787 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031561 B = 0.001902 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.949911 B =14714.408998 C =15353.136147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 H 0.054 0.946 4 C 0.032 3.968 5 C -0.530 4.530 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.079 3.921 14 N -0.678 5.678 15 C 0.067 3.933 16 C -0.071 4.071 17 H 0.074 0.926 18 C -0.105 4.105 19 C -0.115 4.115 20 C 0.061 3.939 21 N -0.495 5.495 22 C 0.099 3.901 23 C -0.189 4.189 24 C -0.103 4.103 25 C -0.157 4.157 26 C -0.100 4.100 27 C -0.153 4.153 28 C 0.063 3.937 29 H 0.036 0.964 30 H 0.033 0.967 31 H 0.068 0.932 32 H -0.015 1.015 33 H -0.011 1.011 34 H 0.262 0.738 35 H 0.016 0.984 36 H 0.060 0.940 37 H 0.342 0.658 38 H 0.028 0.972 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.038 0.962 45 H 0.089 0.911 46 H 0.127 0.873 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.144 0.856 50 H 0.131 0.869 51 H 0.078 0.922 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 2.991 31.553 31.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 H 0.072 0.928 4 C -0.006 4.006 5 C -0.568 4.568 6 H 0.080 0.920 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.192 1.192 13 C -0.051 4.051 14 N -0.309 5.309 15 C -0.063 4.063 16 C -0.090 4.090 17 H 0.092 0.908 18 C -0.143 4.143 19 C -0.152 4.152 20 C -0.064 4.064 21 N -0.209 5.209 22 C 0.001 3.999 23 C -0.210 4.210 24 C -0.121 4.121 25 C -0.175 4.175 26 C -0.118 4.118 27 C -0.174 4.174 28 C -0.064 4.064 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.003 0.997 33 H 0.007 0.993 34 H 0.070 0.930 35 H 0.034 0.966 36 H 0.078 0.922 37 H 0.160 0.840 38 H 0.046 0.954 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.107 0.893 46 H 0.145 0.855 47 H 0.153 0.847 48 H 0.157 0.843 49 H 0.162 0.838 50 H 0.149 0.851 51 H 0.097 0.903 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.658 3.106 31.320 31.586 hybrid contribution 0.988 -0.519 -1.264 1.686 sum -1.670 2.587 30.057 30.214 Atomic orbital electron populations 1.21473 0.94608 1.00283 1.00530 1.21011 0.96771 0.98396 0.93123 0.92791 1.19016 0.94021 0.94686 0.92841 1.21620 1.34451 1.08607 0.92085 0.92046 1.25971 0.95292 0.96139 1.02706 1.70096 1.40272 1.22949 1.24306 0.85550 0.78931 0.78750 0.78117 1.19256 1.21066 1.19218 1.21823 0.96392 0.97322 0.89539 1.60432 1.63879 1.05772 1.00830 1.21915 0.97060 0.98118 0.89166 1.21053 0.96542 0.99552 0.91852 0.90790 1.21496 0.94321 1.00280 0.98191 1.21630 1.00479 0.99919 0.93201 1.22281 0.84075 1.00035 1.00037 1.59000 1.08020 1.52119 1.01788 1.19194 0.96893 0.93167 0.90643 1.21519 1.01950 0.97473 1.00039 1.21296 0.98705 0.99701 0.92428 1.21388 1.00039 0.97800 0.98315 1.21329 0.95601 0.96320 0.98594 1.20992 1.03395 1.01602 0.91386 1.22184 1.00400 0.94990 0.88875 0.94489 0.94775 0.91264 0.99693 0.99263 0.92975 0.96621 0.92163 0.83959 0.95409 0.91427 0.90983 0.92758 0.89835 0.91296 0.94349 0.89301 0.85517 0.84650 0.84282 0.83848 0.85076 0.90344 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.23 8.89 71.98 0.64 -3.59 16 2 C -0.07 -3.02 2.48 -10.79 -0.03 -3.04 16 3 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 4 C 0.03 1.69 4.45 29.85 0.13 1.83 16 5 C -0.53 -30.15 8.41 25.60 0.22 -29.94 16 6 H 0.06 3.35 7.06 -2.91 -0.02 3.33 16 7 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 8 N -0.94 -57.64 13.29 21.45 0.28 -57.36 16 9 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 C 0.08 2.66 5.07 86.30 0.44 3.10 16 14 N -0.68 -18.00 5.47 -513.89 -2.81 -20.81 16 15 C 0.07 1.49 5.08 86.30 0.44 1.93 16 16 C -0.07 -1.34 2.49 -10.75 -0.03 -1.36 16 17 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 18 C -0.11 -1.92 5.15 30.67 0.16 -1.76 16 19 C -0.11 -1.74 6.09 30.65 0.19 -1.55 16 20 C 0.06 0.94 5.26 86.33 0.45 1.40 16 21 N -0.49 -9.01 4.70 -695.39 -3.27 -12.27 16 22 C 0.10 1.83 5.64 38.21 0.22 2.05 16 23 C -0.19 -3.38 8.82 22.40 0.20 -3.18 16 24 C -0.10 -1.57 10.04 22.25 0.22 -1.35 16 25 C -0.16 -2.13 10.04 22.29 0.22 -1.90 16 26 C -0.10 -1.36 10.04 22.25 0.22 -1.14 16 27 C -0.15 -2.48 9.16 22.40 0.21 -2.27 16 28 C 0.06 1.14 3.43 86.32 0.30 1.43 16 29 H 0.04 1.50 6.95 -2.39 -0.02 1.48 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 2.24 7.75 -2.39 -0.02 2.23 16 32 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 33 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 34 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.34 8.65 8.73 -89.69 -0.78 7.86 16 38 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 1.49 7.84 -2.39 -0.02 1.47 16 41 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.04 0.62 8.14 -2.38 -0.02 0.61 16 45 H 0.09 1.19 6.72 -2.39 -0.02 1.17 16 46 H 0.13 2.13 5.81 -2.91 -0.02 2.12 16 47 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 48 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 49 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 50 H 0.13 1.80 7.17 -2.91 -0.02 1.78 16 51 H 0.08 1.44 7.01 -2.39 -0.02 1.42 16 52 H 0.05 0.83 7.71 -2.38 -0.02 0.81 16 Total: -1.00 -64.63 401.37 0.97 -63.67 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.08 Total: 19.12 kcal Atomic # 6 Polarization: -43.78 SS G_CDS: 4.66 Total: -39.13 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -5.79 Total: -90.44 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.63 0.97 -63.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602641196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.674 kcal (2) G-P(sol) polarization free energy of solvation -64.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds