Wall clock time and date at job start Tue Mar 31 2020 11:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47536 * 2 1 4 4 C 1.53000 * 109.47422 * 119.99913 * 2 1 3 5 5 C 1.50708 * 109.46973 * 295.00039 * 4 2 1 6 6 H 1.07991 * 119.99789 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00008 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00089 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99938 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 269.99556 * 9 7 5 11 11 H 1.48503 * 109.47261 * 149.99737 * 9 7 5 12 12 H 1.48500 * 109.47454 * 29.99730 * 9 7 5 13 13 C 1.53002 * 109.47322 * 239.99612 * 2 1 3 14 14 N 1.46907 * 109.46800 * 65.00180 * 13 2 1 15 15 C 1.46900 * 110.99929 * 180.02562 * 14 13 2 16 16 C 1.52992 * 109.47337 * 179.97438 * 15 14 13 17 17 H 1.08999 * 109.50632 * 55.07358 * 16 15 14 18 18 C 1.53121 * 109.50262 * 295.00095 * 16 15 14 19 19 C 1.53122 * 109.16288 * 182.40330 * 18 16 15 20 20 C 1.53040 * 109.27757 * 57.65312 * 19 18 16 21 21 N 1.46848 * 109.52017 * 300.82213 * 20 19 18 22 22 C 1.39677 * 110.99462 * 185.84076 * 21 20 19 23 23 C 1.38917 * 120.07420 * 123.68130 * 22 21 20 24 24 C 1.38101 * 119.92062 * 179.76691 * 23 22 21 25 25 C 1.38279 * 120.07882 * 0.50712 * 24 23 22 26 26 C 1.38290 * 120.14996 * 359.74195 * 25 24 23 27 27 C 1.38104 * 120.07038 * 0.02562 * 26 25 24 28 28 C 1.46846 * 111.19944 * 61.74529 * 21 20 19 29 29 H 1.09001 * 109.46891 * 60.00335 * 1 2 3 30 30 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47173 * 300.00290 * 1 2 3 32 32 H 1.08994 * 109.48028 * 175.00097 * 4 2 1 33 33 H 1.09000 * 109.47206 * 54.99951 * 4 2 1 34 34 H 0.96997 * 119.99848 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47381 * 184.99654 * 13 2 1 36 36 H 1.08998 * 109.47138 * 305.00529 * 13 2 1 37 37 H 1.00899 * 110.99664 * 303.95579 * 14 13 2 38 38 H 1.09004 * 109.46814 * 300.00207 * 15 14 13 39 39 H 1.09003 * 109.47094 * 59.99865 * 15 14 13 40 40 H 1.09003 * 109.52212 * 302.31002 * 18 16 15 41 41 H 1.09001 * 109.52130 * 62.49600 * 18 16 15 42 42 H 1.08999 * 109.50296 * 177.59664 * 19 18 16 43 43 H 1.09003 * 109.50054 * 297.71217 * 19 18 16 44 44 H 1.09000 * 109.46107 * 60.83466 * 20 19 18 45 45 H 1.08995 * 109.46173 * 180.81533 * 20 19 18 46 46 H 1.07996 * 120.03185 * 359.97438 * 23 22 21 47 47 H 1.07999 * 119.95871 * 180.24704 * 24 23 22 48 48 H 1.08000 * 119.92712 * 179.72494 * 25 24 23 49 49 H 1.07995 * 119.96216 * 179.97438 * 26 25 24 50 50 H 1.08008 * 120.03318 * 180.02562 * 27 26 25 51 51 H 1.08999 * 109.46076 * 178.23651 * 28 21 20 52 52 H 1.08997 * 109.46519 * 58.27191 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0572 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9924 -0.4021 3.7284 8 7 1.6440 0.2769 4.7995 9 14 2.9628 -1.9887 3.9029 10 1 2.0236 -3.1332 4.0191 11 1 3.8110 -1.9188 5.1198 12 1 3.8252 -2.1754 2.7085 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.1247 -0.6272 -3.6672 16 6 1.7014 0.1901 -4.8893 17 1 2.0619 1.2135 -4.7853 18 6 0.1740 0.1948 -4.9970 19 6 -0.2388 0.9637 -6.2552 20 6 0.4113 0.3154 -7.4796 21 7 1.8718 0.3362 -7.3285 22 6 2.5013 -0.1281 -8.4857 23 6 3.4340 0.6682 -9.1381 24 6 4.0580 0.2041 -10.2793 25 6 3.7477 -1.0475 -10.7786 26 6 2.8159 -1.8408 -10.1346 27 6 2.1916 -1.3847 -8.9902 28 6 2.2951 -0.4358 -6.1533 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.1262 -0.7995 1.2057 33 1 1.6054 -1.7198 1.2952 34 1 1.8913 -0.0460 5.6800 35 1 3.1263 -0.7995 -1.2056 36 1 1.6053 -1.7198 -1.2951 37 1 0.6528 0.1792 -2.4753 38 1 3.2117 -0.7052 -3.6405 39 1 1.6903 -1.6250 -3.7296 40 1 -0.1898 -0.8308 -5.0611 41 1 -0.2517 0.6789 -4.1181 42 1 -1.3233 0.9341 -6.3604 43 1 0.0914 1.9994 -6.1734 44 1 0.0700 -0.7160 -7.5686 45 1 0.1310 0.8693 -8.3755 46 1 3.6732 1.6478 -8.7514 47 1 4.7862 0.8211 -10.7848 48 1 4.2339 -1.4063 -11.6738 49 1 2.5755 -2.8176 -10.5274 50 1 1.4642 -2.0050 -8.4874 51 1 3.3830 -0.4276 -6.0860 52 1 1.9451 -1.4636 -6.2485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602641197.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:16 Heat of formation + Delta-G solvation = 9.269955 kcal Electronic energy + Delta-G solvation = -25904.635046 eV Core-core repulsion = 22481.669057 eV Total energy + Delta-G solvation = -3422.965988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.57520 -38.56878 -36.99599 -34.90124 -33.25156 -32.16667 -31.27453 -30.94325 -29.38986 -27.54940 -26.12268 -25.04666 -24.02588 -23.01625 -22.29457 -21.82919 -21.04385 -19.79414 -18.95792 -17.68439 -16.82723 -16.33405 -15.86710 -15.54216 -15.36936 -15.08195 -14.62676 -14.26560 -14.22776 -13.93473 -13.88363 -13.71509 -13.50944 -13.16181 -12.99337 -12.80696 -12.50103 -12.10841 -12.04278 -11.93488 -11.76080 -11.61869 -11.57016 -11.31628 -11.03118 -10.85750 -10.69256 -10.68585 -10.45446 -10.35446 -9.78869 -9.71135 -9.41718 -9.29368 -9.06505 -9.02473 -8.75994 -8.49849 -8.18440 -6.00069 -3.96816 0.93231 1.05191 3.32487 3.37965 3.40117 3.43612 3.44029 4.36581 4.48554 4.49653 4.57679 4.59826 4.61316 4.68367 4.76832 4.99225 5.06359 5.11746 5.13622 5.18850 5.25258 5.33425 5.33510 5.40866 5.47296 5.51028 5.59941 5.67437 5.68739 5.70394 5.73055 5.87904 5.93853 5.96636 6.02733 6.07196 6.15556 6.16564 6.18228 6.28436 6.40038 6.47871 6.48983 6.64309 6.79000 6.98505 7.07964 7.11899 7.27294 7.34826 7.50862 7.63353 7.84952 8.59602 9.05790 9.62908 11.13352 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026174 B = 0.001998 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.511669 B =14007.853843 C =14591.744190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 H 0.072 0.928 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.062 3.938 14 N -0.688 5.688 15 C 0.064 3.936 16 C -0.082 4.082 17 H 0.091 0.909 18 C -0.120 4.120 19 C -0.115 4.115 20 C 0.061 3.939 21 N -0.502 5.502 22 C 0.092 3.908 23 C -0.096 4.096 24 C -0.115 4.115 25 C -0.126 4.126 26 C -0.112 4.112 27 C -0.150 4.150 28 C 0.069 3.931 29 H 0.033 0.967 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.015 0.985 33 H 0.009 0.991 34 H 0.262 0.738 35 H 0.066 0.934 36 H 0.022 0.978 37 H 0.339 0.661 38 H 0.071 0.929 39 H 0.024 0.976 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.035 0.965 45 H 0.074 0.926 46 H 0.129 0.871 47 H 0.124 0.876 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.117 0.883 51 H 0.077 0.923 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.156 -2.648 -32.949 33.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 H 0.090 0.910 4 C -0.046 4.046 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.320 5.320 15 C -0.066 4.066 16 C -0.101 4.101 17 H 0.109 0.891 18 C -0.158 4.158 19 C -0.153 4.153 20 C -0.066 4.066 21 N -0.224 5.224 22 C -0.001 4.001 23 C -0.115 4.115 24 C -0.133 4.133 25 C -0.144 4.144 26 C -0.131 4.131 27 C -0.171 4.171 28 C -0.057 4.057 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.033 0.967 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.158 0.842 38 H 0.089 0.911 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.054 0.946 45 H 0.093 0.907 46 H 0.147 0.853 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.135 0.865 51 H 0.095 0.905 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.831 -1.735 -32.615 32.672 hybrid contribution -0.357 -2.569 0.091 2.596 sum 0.475 -4.304 -32.524 32.811 Atomic orbital electron populations 1.21748 0.96291 1.00444 1.00799 1.21032 0.95178 1.00246 0.93027 0.90972 1.19603 0.95941 0.95654 0.93448 1.21139 1.35236 1.09562 0.89085 0.90806 1.25035 0.95686 0.96959 0.95978 1.69915 1.47231 1.39319 0.97980 0.86802 0.80653 0.84316 0.77631 1.20473 1.21480 1.19082 1.22160 1.00285 0.94393 0.89838 1.60561 1.19807 1.50387 1.01254 1.21909 1.00488 0.94668 0.89560 1.21197 0.95162 1.01412 0.92313 0.89064 1.21677 0.95685 1.00164 0.98225 1.21580 0.99522 1.00572 0.93644 1.22158 0.85871 0.99423 0.99148 1.59532 1.07031 1.54534 1.01263 1.18861 0.96488 0.92252 0.92521 1.21101 0.95698 0.99860 0.94815 1.21138 0.99748 0.96165 0.96288 1.21181 0.98297 0.94793 1.00154 1.21034 0.96791 0.99720 0.95537 1.21690 1.01153 0.96544 0.97664 1.22129 1.00445 0.94320 0.88851 0.94759 0.94142 0.91314 0.96678 0.97304 0.92854 0.91528 0.95982 0.84157 0.91100 0.95831 0.92555 0.90998 0.91326 0.90708 0.94637 0.90743 0.85268 0.85756 0.86111 0.86214 0.86475 0.90455 0.94629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.77 37.15 0.33 -2.16 16 2 C -0.08 -1.50 2.54 -90.62 -0.23 -1.73 16 3 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.30 16 5 C -0.51 -14.55 8.96 -34.44 -0.31 -14.86 16 6 H 0.07 2.25 7.30 -52.49 -0.38 1.86 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.09 13.96 55.43 0.77 -27.32 16 9 Si 0.88 21.97 27.47 -169.99 -4.67 17.31 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 13 C 0.06 1.02 5.14 -3.82 -0.02 1.00 16 14 N -0.69 -9.64 6.50 -113.78 -0.74 -10.38 16 15 C 0.06 0.74 5.15 -3.83 -0.02 0.72 16 16 C -0.08 -0.82 2.56 -90.54 -0.23 -1.05 16 17 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 18 C -0.12 -1.10 5.00 -26.61 -0.13 -1.23 16 19 C -0.12 -0.94 6.09 -26.65 -0.16 -1.10 16 20 C 0.06 0.51 5.06 -3.83 -0.02 0.49 16 21 N -0.50 -4.69 4.62 -171.15 -0.79 -5.48 16 22 C 0.09 0.85 4.68 -83.79 -0.39 0.46 16 23 C -0.10 -0.82 9.97 -39.38 -0.39 -1.21 16 24 C -0.11 -0.83 10.04 -39.62 -0.40 -1.23 16 25 C -0.13 -0.88 10.04 -39.55 -0.40 -1.28 16 26 C -0.11 -0.83 10.04 -39.61 -0.40 -1.23 16 27 C -0.15 -1.27 8.74 -39.38 -0.34 -1.62 16 28 C 0.07 0.66 4.50 -3.84 -0.02 0.64 16 29 H 0.03 0.53 6.68 -51.93 -0.35 0.18 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 32 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 33 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.34 4.50 5.29 -39.29 -0.21 4.30 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.69 6.80 -51.93 -0.35 0.34 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.04 0.29 7.15 -51.93 -0.37 -0.08 16 45 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 46 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 47 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 48 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 49 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 50 H 0.12 0.93 7.13 -52.48 -0.37 0.56 16 51 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 52 H 0.04 0.34 7.79 -51.93 -0.40 -0.07 16 LS Contribution 397.60 15.07 5.99 5.99 Total: -1.00 -30.49 397.60 -12.26 -42.75 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -9.50 Total: 1.05 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -3.33 Total: -23.92 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: -0.76 Total: -43.18 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.49 -12.26 -42.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602641197.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.023 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds