Wall clock time and date at job start Tue Mar 31 2020 11:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47536 * 2 1 4 4 C 1.53000 * 109.47422 * 119.99913 * 2 1 3 5 5 C 1.50708 * 109.46973 * 295.00039 * 4 2 1 6 6 H 1.07991 * 119.99789 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00008 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00089 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99938 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 269.99556 * 9 7 5 11 11 H 1.48503 * 109.47261 * 149.99737 * 9 7 5 12 12 H 1.48500 * 109.47454 * 29.99730 * 9 7 5 13 13 C 1.53002 * 109.47322 * 239.99612 * 2 1 3 14 14 N 1.46907 * 109.46800 * 65.00180 * 13 2 1 15 15 C 1.46900 * 110.99929 * 180.02562 * 14 13 2 16 16 C 1.52992 * 109.47337 * 179.97438 * 15 14 13 17 17 H 1.08999 * 109.50632 * 55.07358 * 16 15 14 18 18 C 1.53121 * 109.50262 * 295.00095 * 16 15 14 19 19 C 1.53122 * 109.16288 * 182.40330 * 18 16 15 20 20 C 1.53040 * 109.27757 * 57.65312 * 19 18 16 21 21 N 1.46848 * 109.52017 * 300.82213 * 20 19 18 22 22 C 1.39677 * 110.99462 * 185.84076 * 21 20 19 23 23 C 1.38917 * 120.07420 * 123.68130 * 22 21 20 24 24 C 1.38101 * 119.92062 * 179.76691 * 23 22 21 25 25 C 1.38279 * 120.07882 * 0.50712 * 24 23 22 26 26 C 1.38290 * 120.14996 * 359.74195 * 25 24 23 27 27 C 1.38104 * 120.07038 * 0.02562 * 26 25 24 28 28 C 1.46846 * 111.19944 * 61.74529 * 21 20 19 29 29 H 1.09001 * 109.46891 * 60.00335 * 1 2 3 30 30 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47173 * 300.00290 * 1 2 3 32 32 H 1.08994 * 109.48028 * 175.00097 * 4 2 1 33 33 H 1.09000 * 109.47206 * 54.99951 * 4 2 1 34 34 H 0.96997 * 119.99848 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47381 * 184.99654 * 13 2 1 36 36 H 1.08998 * 109.47138 * 305.00529 * 13 2 1 37 37 H 1.00899 * 110.99664 * 303.95579 * 14 13 2 38 38 H 1.09004 * 109.46814 * 300.00207 * 15 14 13 39 39 H 1.09003 * 109.47094 * 59.99865 * 15 14 13 40 40 H 1.09003 * 109.52212 * 302.31002 * 18 16 15 41 41 H 1.09001 * 109.52130 * 62.49600 * 18 16 15 42 42 H 1.08999 * 109.50296 * 177.59664 * 19 18 16 43 43 H 1.09003 * 109.50054 * 297.71217 * 19 18 16 44 44 H 1.09000 * 109.46107 * 60.83466 * 20 19 18 45 45 H 1.08995 * 109.46173 * 180.81533 * 20 19 18 46 46 H 1.07996 * 120.03185 * 359.97438 * 23 22 21 47 47 H 1.07999 * 119.95871 * 180.24704 * 24 23 22 48 48 H 1.08000 * 119.92712 * 179.72494 * 25 24 23 49 49 H 1.07995 * 119.96216 * 179.97438 * 26 25 24 50 50 H 1.08008 * 120.03318 * 180.02562 * 27 26 25 51 51 H 1.08999 * 109.46076 * 178.23651 * 28 21 20 52 52 H 1.08997 * 109.46519 * 58.27191 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0572 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9924 -0.4021 3.7284 8 7 1.6440 0.2769 4.7995 9 14 2.9628 -1.9887 3.9029 10 1 2.0236 -3.1332 4.0191 11 1 3.8110 -1.9188 5.1198 12 1 3.8252 -2.1754 2.7085 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.1247 -0.6272 -3.6672 16 6 1.7014 0.1901 -4.8893 17 1 2.0619 1.2135 -4.7853 18 6 0.1740 0.1948 -4.9970 19 6 -0.2388 0.9637 -6.2552 20 6 0.4113 0.3154 -7.4796 21 7 1.8718 0.3362 -7.3285 22 6 2.5013 -0.1281 -8.4857 23 6 3.4340 0.6682 -9.1381 24 6 4.0580 0.2041 -10.2793 25 6 3.7477 -1.0475 -10.7786 26 6 2.8159 -1.8408 -10.1346 27 6 2.1916 -1.3847 -8.9902 28 6 2.2951 -0.4358 -6.1533 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.1262 -0.7995 1.2057 33 1 1.6054 -1.7198 1.2952 34 1 1.8913 -0.0460 5.6800 35 1 3.1263 -0.7995 -1.2056 36 1 1.6053 -1.7198 -1.2951 37 1 0.6528 0.1792 -2.4753 38 1 3.2117 -0.7052 -3.6405 39 1 1.6903 -1.6250 -3.7296 40 1 -0.1898 -0.8308 -5.0611 41 1 -0.2517 0.6789 -4.1181 42 1 -1.3233 0.9341 -6.3604 43 1 0.0914 1.9994 -6.1734 44 1 0.0700 -0.7160 -7.5686 45 1 0.1310 0.8693 -8.3755 46 1 3.6732 1.6478 -8.7514 47 1 4.7862 0.8211 -10.7848 48 1 4.2339 -1.4063 -11.6738 49 1 2.5755 -2.8176 -10.5274 50 1 1.4642 -2.0050 -8.4874 51 1 3.3830 -0.4276 -6.0860 52 1 1.9451 -1.4636 -6.2485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602641197.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:15 Heat of formation + Delta-G solvation = -7.519964 kcal Electronic energy + Delta-G solvation = -25905.363111 eV Core-core repulsion = 22481.669057 eV Total energy + Delta-G solvation = -3423.694054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.23063 -39.32369 -38.22952 -36.11418 -34.61267 -33.67074 -32.04731 -31.81826 -30.05278 -29.36418 -27.34373 -25.96092 -25.16136 -23.60320 -23.50860 -22.95588 -21.79114 -20.72764 -20.39963 -18.95492 -18.28883 -17.11921 -16.82769 -16.57317 -16.14328 -16.04359 -15.74824 -15.57419 -15.34735 -14.94939 -14.78106 -14.74890 -14.45574 -14.19516 -14.14483 -13.83728 -13.65993 -13.45749 -13.36589 -13.00619 -12.82534 -12.74177 -12.51382 -12.39601 -12.14984 -12.09880 -12.06019 -11.73016 -11.62871 -11.51846 -11.40727 -11.20643 -11.12172 -10.97972 -10.73409 -9.86401 -9.66320 -9.41982 -9.30139 -8.25657 -6.27895 0.35396 0.47935 1.35414 1.37733 1.49491 2.37882 2.71593 2.84019 3.09361 3.32009 3.75520 3.86057 3.92018 4.04023 4.09526 4.16436 4.19577 4.26847 4.27455 4.36972 4.41461 4.43513 4.50545 4.53172 4.56365 4.60865 4.68254 4.76598 4.79778 4.81622 4.84528 4.91279 4.95346 5.00286 5.05144 5.11955 5.14354 5.21992 5.28190 5.32490 5.38207 5.45379 5.50249 5.55881 5.59358 5.61780 5.70499 5.73634 5.92327 5.96801 6.14889 6.35494 6.47436 6.53762 6.79667 7.35451 8.91032 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026174 B = 0.001998 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.511669 B =14007.853843 C =14591.744190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 H 0.052 0.948 4 C -0.006 4.006 5 C -0.518 4.518 6 H 0.035 0.965 7 C 0.000 4.000 8 N -0.953 5.953 9 Si 0.949 3.051 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.248 1.248 13 C 0.075 3.925 14 N -0.693 5.693 15 C 0.067 3.933 16 C -0.072 4.072 17 H 0.075 0.925 18 C -0.117 4.117 19 C -0.111 4.111 20 C 0.062 3.938 21 N -0.509 5.509 22 C 0.075 3.925 23 C -0.111 4.111 24 C -0.117 4.117 25 C -0.129 4.129 26 C -0.118 4.118 27 C -0.160 4.160 28 C 0.076 3.924 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.034 0.966 32 H 0.015 0.985 33 H 0.017 0.983 34 H 0.264 0.736 35 H 0.064 0.936 36 H 0.032 0.968 37 H 0.344 0.656 38 H 0.068 0.932 39 H 0.032 0.968 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.039 0.961 45 H 0.075 0.925 46 H 0.127 0.873 47 H 0.144 0.856 48 H 0.144 0.856 49 H 0.138 0.862 50 H 0.119 0.881 51 H 0.070 0.930 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.669 -4.634 -35.487 35.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 H 0.070 0.930 4 C -0.044 4.044 5 C -0.557 4.557 6 H 0.053 0.947 7 C -0.197 4.197 8 N -0.595 5.595 9 Si 0.772 3.228 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.171 1.171 13 C -0.054 4.054 14 N -0.326 5.326 15 C -0.062 4.062 16 C -0.091 4.091 17 H 0.094 0.906 18 C -0.155 4.155 19 C -0.149 4.149 20 C -0.064 4.064 21 N -0.231 5.231 22 C -0.018 4.018 23 C -0.130 4.130 24 C -0.136 4.136 25 C -0.147 4.147 26 C -0.136 4.136 27 C -0.180 4.180 28 C -0.051 4.051 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.034 0.966 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.164 0.836 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.057 0.943 45 H 0.094 0.906 46 H 0.145 0.855 47 H 0.162 0.838 48 H 0.161 0.839 49 H 0.155 0.845 50 H 0.137 0.863 51 H 0.089 0.911 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.337 -3.716 -35.184 35.405 hybrid contribution -0.544 -1.852 0.822 2.097 sum 0.794 -5.568 -34.363 34.820 Atomic orbital electron populations 1.21658 0.95277 1.00981 1.00697 1.20900 0.96051 0.99037 0.93156 0.92952 1.19558 0.95952 0.95639 0.93264 1.21458 1.34290 1.08673 0.91230 0.94705 1.26017 0.97050 1.01028 0.95556 1.70074 1.49085 1.41626 0.98680 0.85681 0.79351 0.79515 0.78222 1.19256 1.21195 1.17133 1.21885 1.00023 0.94398 0.89131 1.60484 1.20308 1.50470 1.01303 1.21914 1.00343 0.95066 0.88904 1.21058 0.95911 1.00188 0.91967 0.90628 1.21653 0.94783 1.00544 0.98525 1.21550 1.00361 0.99851 0.93110 1.22159 0.85418 0.99617 0.99212 1.59515 1.07566 1.54641 1.01358 1.18992 0.97158 0.92906 0.92754 1.21239 0.96156 1.00010 0.95608 1.21412 0.99736 0.96628 0.95811 1.21506 0.97942 0.94512 1.00715 1.21320 0.96571 1.00587 0.95163 1.21775 1.01582 0.96403 0.98271 1.22014 0.99968 0.94371 0.88766 0.91658 0.93201 0.94634 0.96635 0.96503 0.92702 0.91755 0.95031 0.83575 0.91359 0.95017 0.92063 0.91382 0.89917 0.91525 0.94306 0.90634 0.85457 0.83834 0.83856 0.84453 0.86302 0.91132 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 8.77 71.98 0.63 -4.01 16 2 C -0.07 -2.83 2.54 -10.80 -0.03 -2.86 16 3 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 4 C -0.01 -0.29 3.52 29.85 0.10 -0.19 16 5 C -0.52 -30.15 8.96 25.60 0.23 -29.92 16 6 H 0.03 2.23 7.30 -2.92 -0.02 2.21 16 7 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 8 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 9 Si 0.95 45.00 27.47 68.60 1.88 46.89 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 13 C 0.07 2.33 5.14 86.30 0.44 2.77 16 14 N -0.69 -18.22 6.50 -513.88 -3.34 -21.56 16 15 C 0.07 1.45 5.15 86.30 0.44 1.89 16 16 C -0.07 -1.36 2.56 -10.74 -0.03 -1.39 16 17 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 18 C -0.12 -1.96 5.00 30.68 0.15 -1.80 16 19 C -0.11 -1.66 6.09 30.65 0.19 -1.47 16 20 C 0.06 0.97 5.06 86.33 0.44 1.40 16 21 N -0.51 -9.12 4.62 -695.40 -3.21 -12.33 16 22 C 0.08 1.33 4.68 38.21 0.18 1.51 16 23 C -0.11 -1.82 9.97 22.40 0.22 -1.60 16 24 C -0.12 -1.51 10.04 22.25 0.22 -1.29 16 25 C -0.13 -1.52 10.04 22.29 0.22 -1.29 16 26 C -0.12 -1.53 10.04 22.25 0.22 -1.31 16 27 C -0.16 -2.52 8.74 22.40 0.20 -2.32 16 28 C 0.08 1.36 4.50 86.33 0.39 1.75 16 29 H 0.06 1.92 6.68 -2.39 -0.02 1.90 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.03 1.49 6.95 -2.39 -0.02 1.48 16 32 H 0.02 0.72 7.20 -2.39 -0.02 0.71 16 33 H 0.02 0.76 7.57 -2.39 -0.02 0.75 16 34 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.34 8.42 5.29 -89.69 -0.47 7.95 16 38 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.19 6.80 -2.39 -0.02 1.18 16 42 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.04 0.58 7.15 -2.39 -0.02 0.56 16 45 H 0.08 1.15 8.11 -2.39 -0.02 1.13 16 46 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 47 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 48 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 49 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 50 H 0.12 1.74 7.13 -2.91 -0.02 1.72 16 51 H 0.07 1.35 8.11 -2.39 -0.02 1.33 16 52 H 0.04 0.66 7.79 -2.39 -0.02 0.64 16 Total: -1.00 -66.69 397.60 0.66 -66.03 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.33 Total: 21.10 kcal Atomic # 6 Polarization: -44.38 SS G_CDS: 4.70 Total: -39.69 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -6.25 Total: -94.33 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.89 kcal Total: -66.69 0.66 -66.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602641197.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.514 kcal (2) G-P(sol) polarization free energy of solvation -66.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds