Wall clock time and date at job start Tue Mar 31 2020 11:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46618 * 2 1 4 4 C 1.53004 * 109.46678 * 240.00401 * 2 1 3 5 5 C 1.50695 * 109.47384 * 65.00186 * 4 2 1 6 6 H 1.08004 * 120.00169 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99793 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00302 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99631 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47049 * 60.00092 * 9 7 5 11 11 H 1.48505 * 109.46605 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47107 * 299.99709 * 9 7 5 13 13 C 1.52993 * 109.47237 * 120.00219 * 2 1 3 14 14 N 1.46905 * 109.47039 * 295.00079 * 13 2 1 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.53004 * 109.46916 * 180.02562 * 15 14 13 17 17 H 1.08994 * 109.50199 * 55.07621 * 16 15 14 18 18 C 1.53116 * 109.50100 * 294.99450 * 16 15 14 19 19 C 1.53118 * 109.16123 * 182.40302 * 18 16 15 20 20 C 1.53039 * 109.27506 * 57.65864 * 19 18 16 21 21 N 1.46850 * 109.52406 * 300.82224 * 20 19 18 22 22 C 1.39669 * 111.00060 * 185.84147 * 21 20 19 23 23 C 1.38912 * 120.07814 * 123.67629 * 22 21 20 24 24 C 1.38103 * 119.92569 * 179.76903 * 23 22 21 25 25 C 1.38286 * 120.07704 * 0.50458 * 24 23 22 26 26 C 1.38288 * 120.14714 * 359.74819 * 25 24 23 27 27 C 1.38109 * 120.07558 * 359.97438 * 26 25 24 28 28 C 1.46843 * 111.19747 * 61.73996 * 21 20 19 29 29 H 1.08999 * 109.46618 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46725 * 299.99546 * 1 2 3 31 31 H 1.08995 * 109.47462 * 60.00244 * 1 2 3 32 32 H 1.09001 * 109.46592 * 184.99906 * 4 2 1 33 33 H 1.09003 * 109.47168 * 304.99277 * 4 2 1 34 34 H 0.96996 * 120.00329 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47393 * 175.00360 * 13 2 1 36 36 H 1.08998 * 109.47408 * 55.00006 * 13 2 1 37 37 H 1.00901 * 110.99869 * 56.04956 * 14 13 2 38 38 H 1.09004 * 109.47031 * 299.99620 * 15 14 13 39 39 H 1.08995 * 109.47111 * 59.99900 * 15 14 13 40 40 H 1.08997 * 109.52482 * 302.31402 * 18 16 15 41 41 H 1.09001 * 109.51796 * 62.50397 * 18 16 15 42 42 H 1.08998 * 109.50656 * 177.59943 * 19 18 16 43 43 H 1.09000 * 109.50711 * 297.72084 * 19 18 16 44 44 H 1.08997 * 109.46259 * 60.83310 * 20 19 18 45 45 H 1.08998 * 109.46560 * 180.81456 * 20 19 18 46 46 H 1.07997 * 120.03606 * 0.02562 * 23 22 21 47 47 H 1.08002 * 119.96349 * 180.25262 * 24 23 22 48 48 H 1.08000 * 119.93080 * 179.72424 * 25 24 23 49 49 H 1.07997 * 119.96244 * 179.97438 * 26 25 24 50 50 H 1.07998 * 120.03463 * 180.02562 * 27 26 25 51 51 H 1.09005 * 109.45992 * 178.24173 * 28 21 20 52 52 H 1.08999 * 109.46658 * 58.27763 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0572 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6772 -1.5181 -3.8512 9 14 1.4984 0.5629 -5.2497 10 1 2.0896 1.9237 -5.1870 11 1 1.9946 -0.1365 -6.4621 12 1 0.0184 0.6684 -5.3092 13 6 2.0401 -0.7213 1.2491 14 7 1.6514 0.0374 2.4456 15 6 2.1259 -0.6266 3.6671 16 6 1.7024 0.1908 4.8892 17 1 0.6232 0.3422 4.8696 18 6 2.4096 1.5487 4.8660 19 6 2.0272 2.3360 6.1223 20 6 2.4063 1.5236 7.3626 21 7 1.7037 0.2343 7.3384 22 6 1.9237 -0.4779 8.5195 23 6 0.8469 -0.8986 9.2897 24 6 1.0680 -1.6067 10.4546 25 6 2.3598 -1.8882 10.8600 26 6 3.4342 -1.4664 10.0983 27 6 3.2201 -0.7627 8.9294 28 6 2.0909 -0.5594 6.1652 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.1263 -0.7994 -1.2057 33 1 1.6054 -1.7198 -1.2953 34 1 2.9244 -1.8410 -4.7318 35 1 3.1264 -0.7994 1.2055 36 1 1.6055 -1.7198 1.2951 37 1 0.6529 0.1792 2.4753 38 1 1.6922 -1.6247 3.7300 39 1 3.2128 -0.7038 3.6399 40 1 3.4888 1.3970 4.8455 41 1 2.1021 2.1044 3.9802 42 1 2.5608 3.2864 6.1327 43 1 0.9530 2.5212 6.1229 44 1 3.4824 1.3506 7.3685 45 1 2.1221 2.0751 8.2588 46 1 -0.1621 -0.6756 8.9758 47 1 0.2311 -1.9376 11.0517 48 1 2.5300 -2.4383 11.7736 49 1 4.4418 -1.6875 10.4179 50 1 4.0596 -0.4340 8.3348 51 1 1.5779 -1.5208 6.1918 52 1 3.1686 -0.7227 6.1767 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602641198.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:18 Heat of formation + Delta-G solvation = 5.159506 kcal Electronic energy + Delta-G solvation = -25827.371169 eV Core-core repulsion = 22404.226939 eV Total energy + Delta-G solvation = -3423.144230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.51935 -38.47038 -36.88286 -34.78196 -33.23872 -32.13796 -31.24730 -30.79208 -29.33133 -26.96086 -26.05602 -24.82843 -24.08739 -22.96362 -22.26399 -22.03451 -21.06435 -19.77494 -18.88141 -17.65049 -16.43856 -16.24406 -15.54227 -15.46966 -15.40842 -14.93802 -14.60082 -14.46633 -14.22552 -13.95222 -13.71026 -13.63449 -13.44623 -13.08458 -12.76514 -12.68849 -12.30859 -12.11129 -11.91334 -11.83526 -11.68344 -11.55372 -11.33652 -11.19738 -10.86543 -10.74861 -10.70746 -10.52029 -10.42216 -10.30321 -10.15062 -9.68605 -9.26852 -9.13438 -9.02655 -8.93753 -8.72233 -8.30851 -8.08653 -5.95622 -3.96765 0.95984 1.07649 3.35827 3.40051 3.40986 3.42668 3.47850 4.39497 4.50554 4.60002 4.62944 4.63713 4.73622 4.75612 4.82669 5.04166 5.10366 5.18935 5.19770 5.23471 5.34799 5.39133 5.39984 5.50523 5.56740 5.58616 5.67817 5.73129 5.81727 5.82354 5.84049 5.99361 5.99649 6.06398 6.09097 6.18593 6.19022 6.29274 6.31992 6.37387 6.49923 6.51908 6.59142 6.69004 6.97701 7.13529 7.15769 7.20071 7.41003 7.69105 7.72473 7.88645 8.04715 8.48636 9.09440 9.66414 11.15850 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031237 B = 0.001880 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.145805 B =14886.780022 C =15170.412168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.065 3.935 14 N -0.687 5.687 15 C 0.063 3.937 16 C -0.080 4.080 17 H 0.078 0.922 18 C -0.108 4.108 19 C -0.119 4.119 20 C 0.060 3.940 21 N -0.503 5.503 22 C 0.093 3.907 23 C -0.097 4.097 24 C -0.115 4.115 25 C -0.127 4.127 26 C -0.112 4.112 27 C -0.150 4.150 28 C 0.068 3.932 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.062 0.938 32 H 0.015 0.985 33 H 0.014 0.986 34 H 0.260 0.740 35 H 0.065 0.935 36 H 0.022 0.978 37 H 0.338 0.662 38 H 0.025 0.975 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.036 0.964 45 H 0.072 0.928 46 H 0.128 0.872 47 H 0.124 0.876 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.118 0.882 51 H 0.074 0.926 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.051 1.909 30.357 30.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.319 5.319 15 C -0.067 4.067 16 C -0.099 4.099 17 H 0.096 0.904 18 C -0.145 4.145 19 C -0.156 4.156 20 C -0.066 4.066 21 N -0.225 5.225 22 C -0.001 4.001 23 C -0.116 4.116 24 C -0.134 4.134 25 C -0.145 4.145 26 C -0.130 4.130 27 C -0.170 4.170 28 C -0.058 4.058 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.032 0.968 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.156 0.844 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.054 0.946 45 H 0.091 0.909 46 H 0.146 0.854 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.092 0.908 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.929 2.324 30.121 30.225 hybrid contribution 0.117 -0.580 -0.789 0.987 sum -0.812 1.744 29.332 29.395 Atomic orbital electron populations 1.21738 0.96702 1.00402 1.00260 1.21218 0.94848 1.00064 0.94162 0.91669 1.19105 0.96099 0.95347 0.90391 1.21207 1.34646 1.08279 0.91007 0.92612 1.25026 0.95356 0.95109 0.99098 1.69952 1.39023 1.21259 1.23455 0.86686 0.78845 0.80141 0.82483 1.20281 1.21398 1.20320 1.22124 1.00243 0.94404 0.89589 1.60543 1.19523 1.50474 1.01317 1.21917 1.00473 0.94717 0.89576 1.21167 1.01145 0.95369 0.92208 0.90402 1.21535 0.99702 0.95390 0.97915 1.21638 1.02233 0.97888 0.93868 1.22168 0.95765 0.89331 0.99342 1.59539 1.58696 1.03867 1.00351 1.18871 0.92109 0.96761 0.92332 1.21087 0.98879 0.97609 0.94011 1.21131 0.97057 0.98599 0.96593 1.21178 0.92794 1.00519 0.99978 1.21041 0.99039 0.98126 0.94843 1.21708 0.97317 1.00195 0.97791 1.22142 0.98603 0.96239 0.88861 0.94085 0.94918 0.91915 0.96713 0.96804 0.93063 0.91613 0.95945 0.84383 0.95642 0.91326 0.92541 0.90019 0.91403 0.91087 0.94576 0.90919 0.85366 0.85804 0.86124 0.86191 0.86383 0.90763 0.94397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.78 37.16 0.33 -2.17 16 2 C -0.08 -1.72 2.55 -90.62 -0.23 -1.95 16 3 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.45 8.41 -34.44 -0.29 -14.73 16 6 H 0.06 1.53 7.06 -52.48 -0.37 1.15 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.06 1.13 5.14 -3.82 -0.02 1.11 16 14 N -0.69 -9.85 6.00 -113.78 -0.68 -10.53 16 15 C 0.06 0.77 5.08 -3.82 -0.02 0.75 16 16 C -0.08 -0.83 2.49 -90.54 -0.23 -1.05 16 17 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 18 C -0.11 -1.11 5.14 -26.61 -0.14 -1.24 16 19 C -0.12 -1.05 6.09 -26.65 -0.16 -1.21 16 20 C 0.06 0.54 5.06 -3.83 -0.02 0.52 16 21 N -0.50 -4.87 4.62 -171.15 -0.79 -5.66 16 22 C 0.09 0.88 4.68 -83.79 -0.39 0.49 16 23 C -0.10 -0.85 9.97 -39.38 -0.39 -1.24 16 24 C -0.12 -0.86 10.04 -39.61 -0.40 -1.25 16 25 C -0.13 -0.91 10.04 -39.55 -0.40 -1.31 16 26 C -0.11 -0.86 10.04 -39.61 -0.40 -1.26 16 27 C -0.15 -1.32 8.74 -39.38 -0.34 -1.67 16 28 C 0.07 0.67 4.50 -3.84 -0.02 0.66 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 31 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.34 4.64 6.98 -39.29 -0.27 4.37 16 38 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.95 7.83 -51.93 -0.41 0.54 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.04 0.32 7.15 -51.93 -0.37 -0.05 16 45 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 46 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 47 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 48 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 49 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 50 H 0.12 0.99 7.13 -52.49 -0.37 0.61 16 51 H 0.07 0.76 8.11 -51.93 -0.42 0.33 16 52 H 0.04 0.38 7.79 -51.93 -0.40 -0.03 16 LS Contribution 403.44 15.07 6.08 6.08 Total: -1.00 -29.79 403.44 -12.67 -42.46 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -9.65 Total: 0.75 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -3.34 Total: -23.50 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: -0.74 Total: -42.59 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.79 -12.67 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602641198.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.620 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds