Wall clock time and date at job start Tue Mar 31 2020 11:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46618 * 2 1 4 4 C 1.53004 * 109.46678 * 240.00401 * 2 1 3 5 5 C 1.50695 * 109.47384 * 65.00186 * 4 2 1 6 6 H 1.08004 * 120.00169 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99793 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00302 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99631 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47049 * 60.00092 * 9 7 5 11 11 H 1.48505 * 109.46605 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47107 * 299.99709 * 9 7 5 13 13 C 1.52993 * 109.47237 * 120.00219 * 2 1 3 14 14 N 1.46905 * 109.47039 * 295.00079 * 13 2 1 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.53004 * 109.46916 * 180.02562 * 15 14 13 17 17 H 1.08994 * 109.50199 * 55.07621 * 16 15 14 18 18 C 1.53116 * 109.50100 * 294.99450 * 16 15 14 19 19 C 1.53118 * 109.16123 * 182.40302 * 18 16 15 20 20 C 1.53039 * 109.27506 * 57.65864 * 19 18 16 21 21 N 1.46850 * 109.52406 * 300.82224 * 20 19 18 22 22 C 1.39669 * 111.00060 * 185.84147 * 21 20 19 23 23 C 1.38912 * 120.07814 * 123.67629 * 22 21 20 24 24 C 1.38103 * 119.92569 * 179.76903 * 23 22 21 25 25 C 1.38286 * 120.07704 * 0.50458 * 24 23 22 26 26 C 1.38288 * 120.14714 * 359.74819 * 25 24 23 27 27 C 1.38109 * 120.07558 * 359.97438 * 26 25 24 28 28 C 1.46843 * 111.19747 * 61.73996 * 21 20 19 29 29 H 1.08999 * 109.46618 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46725 * 299.99546 * 1 2 3 31 31 H 1.08995 * 109.47462 * 60.00244 * 1 2 3 32 32 H 1.09001 * 109.46592 * 184.99906 * 4 2 1 33 33 H 1.09003 * 109.47168 * 304.99277 * 4 2 1 34 34 H 0.96996 * 120.00329 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47393 * 175.00360 * 13 2 1 36 36 H 1.08998 * 109.47408 * 55.00006 * 13 2 1 37 37 H 1.00901 * 110.99869 * 56.04956 * 14 13 2 38 38 H 1.09004 * 109.47031 * 299.99620 * 15 14 13 39 39 H 1.08995 * 109.47111 * 59.99900 * 15 14 13 40 40 H 1.08997 * 109.52482 * 302.31402 * 18 16 15 41 41 H 1.09001 * 109.51796 * 62.50397 * 18 16 15 42 42 H 1.08998 * 109.50656 * 177.59943 * 19 18 16 43 43 H 1.09000 * 109.50711 * 297.72084 * 19 18 16 44 44 H 1.08997 * 109.46259 * 60.83310 * 20 19 18 45 45 H 1.08998 * 109.46560 * 180.81456 * 20 19 18 46 46 H 1.07997 * 120.03606 * 0.02562 * 23 22 21 47 47 H 1.08002 * 119.96349 * 180.25262 * 24 23 22 48 48 H 1.08000 * 119.93080 * 179.72424 * 25 24 23 49 49 H 1.07997 * 119.96244 * 179.97438 * 26 25 24 50 50 H 1.07998 * 120.03463 * 180.02562 * 27 26 25 51 51 H 1.09005 * 109.45992 * 178.24173 * 28 21 20 52 52 H 1.08999 * 109.46658 * 58.27763 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0572 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6772 -1.5181 -3.8512 9 14 1.4984 0.5629 -5.2497 10 1 2.0896 1.9237 -5.1870 11 1 1.9946 -0.1365 -6.4621 12 1 0.0184 0.6684 -5.3092 13 6 2.0401 -0.7213 1.2491 14 7 1.6514 0.0374 2.4456 15 6 2.1259 -0.6266 3.6671 16 6 1.7024 0.1908 4.8892 17 1 0.6232 0.3422 4.8696 18 6 2.4096 1.5487 4.8660 19 6 2.0272 2.3360 6.1223 20 6 2.4063 1.5236 7.3626 21 7 1.7037 0.2343 7.3384 22 6 1.9237 -0.4779 8.5195 23 6 0.8469 -0.8986 9.2897 24 6 1.0680 -1.6067 10.4546 25 6 2.3598 -1.8882 10.8600 26 6 3.4342 -1.4664 10.0983 27 6 3.2201 -0.7627 8.9294 28 6 2.0909 -0.5594 6.1652 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.1263 -0.7994 -1.2057 33 1 1.6054 -1.7198 -1.2953 34 1 2.9244 -1.8410 -4.7318 35 1 3.1264 -0.7994 1.2055 36 1 1.6055 -1.7198 1.2951 37 1 0.6529 0.1792 2.4753 38 1 1.6922 -1.6247 3.7300 39 1 3.2128 -0.7038 3.6399 40 1 3.4888 1.3970 4.8455 41 1 2.1021 2.1044 3.9802 42 1 2.5608 3.2864 6.1327 43 1 0.9530 2.5212 6.1229 44 1 3.4824 1.3506 7.3685 45 1 2.1221 2.0751 8.2588 46 1 -0.1621 -0.6756 8.9758 47 1 0.2311 -1.9376 11.0517 48 1 2.5300 -2.4383 11.7736 49 1 4.4418 -1.6875 10.4179 50 1 4.0596 -0.4340 8.3348 51 1 1.5779 -1.5208 6.1918 52 1 3.1686 -0.7227 6.1767 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602641198.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:17 Heat of formation + Delta-G solvation = -10.153863 kcal Electronic energy + Delta-G solvation = -25828.035207 eV Core-core repulsion = 22404.226939 eV Total energy + Delta-G solvation = -3423.808268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.21256 -39.26495 -38.20267 -36.07472 -34.63454 -33.60954 -31.95282 -31.80863 -30.01426 -28.87114 -27.36728 -25.87444 -25.28274 -23.81220 -23.56904 -22.90146 -21.86433 -20.75603 -20.38535 -18.53337 -18.28123 -16.99817 -16.70011 -16.60978 -16.25387 -16.13021 -15.68556 -15.50200 -15.40427 -14.97151 -14.77679 -14.49804 -14.37456 -14.17536 -14.03550 -13.75234 -13.56227 -13.38145 -13.26430 -12.96119 -12.85602 -12.74132 -12.54534 -12.39944 -12.23379 -12.13477 -11.99346 -11.92834 -11.56547 -11.51483 -11.34340 -11.22033 -11.05726 -10.86730 -10.52341 -9.86294 -9.66306 -9.42946 -9.29496 -8.16642 -6.25866 0.35396 0.48018 1.40563 1.43524 1.51115 2.42622 2.71581 2.84111 3.16530 3.31708 3.78482 3.91421 3.95057 4.04904 4.09904 4.17399 4.24388 4.27481 4.30061 4.38801 4.41355 4.48402 4.53492 4.56702 4.58717 4.64158 4.70389 4.77446 4.79616 4.82865 4.89392 4.91884 5.02031 5.04958 5.13006 5.15095 5.21814 5.25673 5.39389 5.45460 5.47310 5.49839 5.51751 5.56839 5.60509 5.61935 5.81121 5.90012 5.92105 5.96287 6.11666 6.32274 6.47517 6.54350 6.90037 7.42235 8.95179 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031237 B = 0.001880 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.145805 B =14886.780022 C =15170.412168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.075 4.075 3 H 0.057 0.943 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.062 0.938 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.078 3.922 14 N -0.683 5.683 15 C 0.066 3.934 16 C -0.069 4.069 17 H 0.076 0.924 18 C -0.105 4.105 19 C -0.112 4.112 20 C 0.062 3.938 21 N -0.507 5.507 22 C 0.075 3.925 23 C -0.110 4.110 24 C -0.117 4.117 25 C -0.129 4.129 26 C -0.118 4.118 27 C -0.161 4.161 28 C 0.074 3.926 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.045 0.955 32 H -0.015 1.015 33 H -0.011 1.011 34 H 0.262 0.738 35 H 0.055 0.945 36 H 0.021 0.979 37 H 0.344 0.656 38 H 0.029 0.971 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.036 0.964 45 H 0.076 0.924 46 H 0.129 0.871 47 H 0.145 0.855 48 H 0.144 0.856 49 H 0.137 0.863 50 H 0.117 0.883 51 H 0.070 0.930 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.928 2.714 31.918 32.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.094 4.094 3 H 0.076 0.924 4 C -0.005 4.005 5 C -0.568 4.568 6 H 0.080 0.920 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.192 1.192 13 C -0.051 4.051 14 N -0.315 5.315 15 C -0.063 4.063 16 C -0.088 4.088 17 H 0.095 0.905 18 C -0.142 4.142 19 C -0.150 4.150 20 C -0.064 4.064 21 N -0.228 5.228 22 C -0.018 4.018 23 C -0.129 4.129 24 C -0.135 4.135 25 C -0.147 4.147 26 C -0.137 4.137 27 C -0.182 4.182 28 C -0.053 4.053 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.004 0.996 33 H 0.007 0.993 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.164 0.836 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.054 0.946 45 H 0.094 0.906 46 H 0.147 0.853 47 H 0.163 0.837 48 H 0.162 0.838 49 H 0.155 0.845 50 H 0.135 0.865 51 H 0.089 0.911 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.817 3.141 31.705 31.912 hybrid contribution 0.419 -0.872 -1.190 1.534 sum -1.397 2.269 30.515 30.631 Atomic orbital electron populations 1.21646 0.94947 1.00597 1.01146 1.21015 0.96234 0.98997 0.93164 0.92439 1.19003 0.94150 0.94555 0.92779 1.21622 1.34467 1.08603 0.92064 0.92022 1.25974 0.95293 0.96135 1.02712 1.70094 1.40245 1.22988 1.24308 0.85547 0.78939 0.78743 0.78100 1.19296 1.21068 1.19162 1.21813 0.99437 0.94173 0.89670 1.60457 1.20044 1.50073 1.00966 1.21927 1.00199 0.95050 0.89163 1.21039 1.00936 0.95208 0.91624 0.90529 1.21481 0.99331 0.95266 0.98145 1.21588 1.02194 0.98143 0.93063 1.22161 0.95712 0.89111 0.99410 1.59533 1.58818 1.04064 1.00381 1.19002 0.92698 0.97623 0.92525 1.21235 0.98806 0.98176 0.94671 1.21422 0.98041 0.97864 0.96223 1.21509 0.92490 1.00078 1.00590 1.21317 1.00234 0.97660 0.94476 1.21784 0.97068 1.00841 0.98463 1.22028 0.98340 0.96052 0.88831 0.94217 0.91370 0.93625 0.99623 0.99300 0.92972 0.92679 0.96101 0.83638 0.95317 0.91744 0.92996 0.91237 0.90281 0.91293 0.94600 0.90550 0.85262 0.83719 0.83833 0.84546 0.86505 0.91106 0.94674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 8.78 71.99 0.63 -3.96 16 2 C -0.08 -3.09 2.55 -10.79 -0.03 -3.12 16 3 H 0.06 2.45 8.14 -2.39 -0.02 2.44 16 4 C 0.03 1.74 4.45 29.85 0.13 1.88 16 5 C -0.53 -30.23 8.41 25.60 0.22 -30.02 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 8 N -0.94 -57.78 13.29 21.45 0.28 -57.49 16 9 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 C 0.08 2.72 5.14 86.30 0.44 3.16 16 14 N -0.68 -18.91 6.00 -513.88 -3.09 -21.99 16 15 C 0.07 1.55 5.08 86.30 0.44 1.99 16 16 C -0.07 -1.37 2.49 -10.74 -0.03 -1.39 16 17 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 18 C -0.10 -2.05 5.14 30.67 0.16 -1.90 16 19 C -0.11 -1.85 6.09 30.65 0.19 -1.67 16 20 C 0.06 1.05 5.06 86.33 0.44 1.49 16 21 N -0.51 -9.39 4.62 -695.40 -3.21 -12.60 16 22 C 0.08 1.37 4.68 38.22 0.18 1.55 16 23 C -0.11 -1.81 9.97 22.40 0.22 -1.58 16 24 C -0.12 -1.53 10.04 22.25 0.22 -1.30 16 25 C -0.13 -1.58 10.04 22.29 0.22 -1.36 16 26 C -0.12 -1.64 10.04 22.25 0.22 -1.42 16 27 C -0.16 -2.71 8.74 22.40 0.20 -2.52 16 28 C 0.07 1.42 4.50 86.33 0.39 1.81 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.99 6.68 -2.39 -0.02 1.97 16 31 H 0.04 1.80 6.95 -2.39 -0.02 1.79 16 32 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 33 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 34 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.34 8.82 6.98 -89.69 -0.63 8.19 16 38 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.55 7.83 -2.39 -0.02 1.53 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.04 0.60 7.15 -2.39 -0.02 0.59 16 45 H 0.08 1.23 8.11 -2.39 -0.02 1.21 16 46 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 47 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 48 H 0.14 1.05 8.06 -2.91 -0.02 1.02 16 49 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 50 H 0.12 1.90 7.13 -2.91 -0.02 1.88 16 51 H 0.07 1.40 8.11 -2.38 -0.02 1.38 16 52 H 0.04 0.69 7.79 -2.39 -0.02 0.67 16 Total: -1.00 -64.52 403.44 0.95 -63.57 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.23 Total: 19.79 kcal Atomic # 6 Polarization: -42.85 SS G_CDS: 4.71 Total: -38.14 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -6.01 Total: -92.09 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -64.52 0.95 -63.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602641198.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.419 kcal (2) G-P(sol) polarization free energy of solvation -64.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds