Wall clock time and date at job start Tue Mar 31 2020 11:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47939 * 2 1 4 4 C 1.53001 * 109.47199 * 120.00562 * 2 1 3 5 5 C 1.50703 * 109.46765 * 294.99491 * 4 2 1 6 6 H 1.07993 * 120.00160 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00022 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99704 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00194 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47481 * 90.00198 * 9 7 5 11 11 H 1.48505 * 109.47121 * 210.00395 * 9 7 5 12 12 H 1.48503 * 109.46989 * 329.99913 * 9 7 5 13 13 C 1.53004 * 109.47037 * 239.99998 * 2 1 3 14 14 N 1.46902 * 109.46842 * 65.00024 * 13 2 1 15 15 C 1.46908 * 110.99570 * 180.02562 * 14 13 2 16 16 C 1.53001 * 109.46463 * 180.02562 * 15 14 13 17 17 H 1.08996 * 110.90815 * 302.58637 * 16 15 14 18 18 C 1.55142 * 110.99002 * 66.45949 * 16 15 14 19 19 C 1.54312 * 103.17714 * 153.82761 * 18 16 15 20 20 N 1.47443 * 107.23612 * 337.62814 * 19 18 16 21 21 C 1.46900 * 111.00227 * 236.74273 * 20 19 18 22 22 C 1.50701 * 109.47223 * 69.87126 * 21 20 19 23 23 C 1.38237 * 119.99983 * 269.73152 * 22 21 20 24 24 C 1.38234 * 120.00040 * 179.76630 * 23 22 21 25 25 C 1.38236 * 119.99767 * 0.48055 * 24 23 22 26 26 C 1.38234 * 120.00212 * 359.78937 * 25 24 23 27 27 C 1.38234 * 120.00075 * 89.99917 * 22 21 20 28 28 C 1.47844 * 108.56494 * 359.01050 * 20 19 18 29 29 H 1.08993 * 109.46963 * 59.99422 * 1 2 3 30 30 H 1.08990 * 109.47459 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46791 * 300.00005 * 1 2 3 32 32 H 1.09001 * 109.47278 * 54.98979 * 4 2 1 33 33 H 1.09001 * 109.47703 * 174.99644 * 4 2 1 34 34 H 0.96998 * 119.99211 * 179.97438 * 8 7 5 35 35 H 1.09010 * 109.46834 * 305.00423 * 13 2 1 36 36 H 1.09001 * 109.47455 * 185.00447 * 13 2 1 37 37 H 1.00892 * 110.99827 * 56.05032 * 14 13 2 38 38 H 1.08998 * 109.46832 * 60.00392 * 15 14 13 39 39 H 1.08993 * 109.47124 * 300.00310 * 15 14 13 40 40 H 1.09002 * 110.70816 * 35.35609 * 18 16 15 41 41 H 1.09005 * 110.70106 * 272.29750 * 18 16 15 42 42 H 1.08997 * 109.89327 * 97.03090 * 19 18 16 43 43 H 1.09001 * 109.89155 * 218.05905 * 19 18 16 44 44 H 1.08999 * 109.47147 * 189.87070 * 21 20 19 45 45 H 1.08994 * 109.46907 * 309.87190 * 21 20 19 46 46 H 1.08001 * 119.99775 * 359.97438 * 23 22 21 47 47 H 1.08004 * 120.00223 * 180.25236 * 24 23 22 48 48 H 1.08001 * 119.99989 * 179.77215 * 25 24 23 49 49 H 1.07995 * 120.00006 * 179.97438 * 26 25 24 50 50 H 1.08000 * 119.99976 * 0.02562 * 27 22 21 51 51 H 1.08999 * 110.37744 * 142.93014 * 28 20 19 52 52 H 1.09007 * 110.37325 * 265.15824 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0801 0.9740 2.3757 7 6 1.9924 -0.4024 3.7283 8 7 2.6756 -1.5196 3.8511 9 14 1.4978 0.5619 5.2497 10 1 0.1704 0.0936 5.7228 11 1 2.5068 0.3516 6.3188 12 1 1.4231 2.0073 4.9170 13 6 2.0400 -0.7213 -1.2493 14 7 1.6513 0.0375 -2.4456 15 6 2.1247 -0.6272 -3.6673 16 6 1.7023 0.1910 -4.8892 17 1 0.6207 0.3228 -4.9141 18 6 2.4300 1.5609 -4.9193 19 6 2.4468 1.9174 -6.4205 20 7 2.2980 0.6568 -7.1706 21 6 3.4169 0.4635 -8.1026 22 6 4.6749 0.1753 -7.3245 23 6 5.4950 1.2147 -6.9269 24 6 6.6465 0.9507 -6.2089 25 6 6.9829 -0.3533 -5.8971 26 6 6.1656 -1.3931 -6.2995 27 6 5.0116 -1.1287 -7.0130 28 6 2.2147 -0.4590 -6.2042 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7199 1.2951 33 1 3.1263 -0.7997 1.2056 34 1 2.9228 -1.8424 4.7317 35 1 1.6052 -1.7199 -1.2952 36 1 3.1263 -0.7996 -1.2057 37 1 1.9881 0.9872 -2.3966 38 1 1.6902 -1.6249 -3.7297 39 1 3.2115 -0.7052 -3.6406 40 1 3.4453 1.4666 -4.5341 41 1 1.8719 2.3062 -4.3524 42 1 1.6182 2.5865 -6.6522 43 1 3.3921 2.3953 -6.6777 44 1 3.1985 -0.3752 -8.7637 45 1 3.5557 1.3672 -8.6960 46 1 5.2344 2.2331 -7.1743 47 1 7.2851 1.7631 -5.8948 48 1 7.8844 -0.5598 -5.3394 49 1 6.4287 -2.4118 -6.0563 50 1 4.3733 -1.9411 -7.3278 51 1 1.5094 -1.2126 -6.5544 52 1 3.1985 -0.9029 -6.0514 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602647363.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:24 Heat of formation + Delta-G solvation = 12.366648 kcal Electronic energy + Delta-G solvation = -26449.858933 eV Core-core repulsion = 23027.027228 eV Total energy + Delta-G solvation = -3422.831705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.51945 -38.51410 -36.79510 -34.59088 -32.96260 -31.85733 -31.35728 -30.20069 -29.29571 -26.98103 -26.33434 -25.08417 -23.78400 -22.83534 -22.18431 -21.88839 -20.62350 -20.27141 -19.00120 -17.14011 -16.50114 -16.33004 -16.03288 -15.42982 -15.36289 -15.02930 -14.62264 -14.21661 -14.04242 -13.94208 -13.80663 -13.50473 -13.45218 -12.87889 -12.80287 -12.57329 -12.32828 -12.16787 -11.76850 -11.57919 -11.53870 -11.46709 -11.37258 -11.21929 -11.04317 -10.83009 -10.78133 -10.74397 -10.61135 -10.26766 -10.19142 -9.67291 -9.21708 -9.12122 -9.04724 -8.93015 -8.54552 -8.31415 -8.08081 -5.96277 -3.97237 1.02519 1.09109 3.33905 3.40021 3.43373 3.44293 3.82598 4.25058 4.40052 4.48656 4.50327 4.58720 4.69654 4.78516 4.80306 4.86841 4.98129 5.18125 5.21945 5.30994 5.35575 5.39538 5.39926 5.42534 5.51898 5.63458 5.69321 5.71178 5.72496 5.74637 5.80313 5.90161 5.91939 6.06390 6.16110 6.18771 6.21220 6.24164 6.28866 6.44898 6.58262 6.69157 6.71056 6.71960 6.78464 7.04437 7.21158 7.22673 7.40528 7.67874 7.72445 7.87676 8.04270 8.48423 9.09224 9.66007 11.15335 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017575 B = 0.002411 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.749363 B =11608.487119 C =12385.779392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.685 5.685 15 C 0.070 3.930 16 C -0.090 4.090 17 H 0.090 0.910 18 C -0.138 4.138 19 C 0.038 3.962 20 N -0.516 5.516 21 C 0.085 3.915 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.108 4.108 28 C 0.029 3.971 29 H 0.042 0.958 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.016 0.984 33 H 0.012 0.988 34 H 0.259 0.741 35 H 0.065 0.935 36 H 0.022 0.978 37 H 0.336 0.664 38 H 0.070 0.930 39 H 0.023 0.977 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.122 0.878 50 H 0.122 0.878 51 H 0.078 0.922 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.232 3.615 -26.706 27.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.316 5.316 15 C -0.060 4.060 16 C -0.109 4.109 17 H 0.109 0.891 18 C -0.176 4.176 19 C -0.090 4.090 20 N -0.237 5.237 21 C -0.043 4.043 22 C -0.121 4.121 23 C -0.129 4.129 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.138 4.138 27 C -0.127 4.127 28 C -0.098 4.098 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.040 0.960 37 H 0.153 0.847 38 H 0.088 0.912 39 H 0.042 0.958 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.140 0.860 50 H 0.140 0.860 51 H 0.096 0.904 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.196 3.244 -26.931 27.449 hybrid contribution 1.650 0.547 1.556 2.333 sum 5.846 3.791 -25.375 26.314 Atomic orbital electron populations 1.21579 0.95699 1.00555 1.00117 1.21193 0.96019 0.98838 0.94046 0.92950 1.19121 0.95858 0.95581 0.90471 1.21245 1.34490 1.08280 0.90993 0.92570 1.25028 0.95354 0.95121 0.99101 1.69974 1.39147 1.21288 1.23331 0.86628 0.78228 0.80425 0.82929 1.20700 1.21332 1.19917 1.22147 0.97025 0.97733 0.89538 1.60518 1.63951 1.05698 1.01434 1.21822 0.96813 0.97920 0.89399 1.22362 1.01082 0.94285 0.93174 0.89143 1.22810 1.00684 0.97877 0.96241 1.22879 1.01174 0.92375 0.92538 1.63984 1.39134 1.02553 1.18074 1.21413 0.85530 1.02731 0.94582 1.20608 0.97435 0.93628 1.00458 1.21076 0.94635 0.98502 0.98703 1.21177 0.97165 0.96885 0.98560 1.21201 0.99816 0.92929 0.99718 1.21191 0.94843 0.99346 0.98400 1.21060 0.96685 0.96094 0.98832 1.23458 1.01433 0.94006 0.90932 0.93921 0.94185 0.92827 0.96571 0.97000 0.93126 0.91604 0.95981 0.84690 0.91180 0.95838 0.91810 0.90481 0.90515 0.92480 0.89817 0.90018 0.86277 0.86101 0.86074 0.85985 0.86031 0.90368 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.08 -1.71 2.48 -90.62 -0.22 -1.93 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.50 8.41 -34.44 -0.29 -14.79 16 6 H 0.06 1.55 7.05 -52.49 -0.37 1.18 16 7 C 0.05 1.58 5.46 -17.81 -0.10 1.48 16 8 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.06 1.14 5.07 -3.82 -0.02 1.12 16 14 N -0.69 -10.09 5.96 -113.77 -0.68 -10.77 16 15 C 0.07 0.88 5.21 -3.82 -0.02 0.86 16 16 C -0.09 -0.96 3.31 -88.22 -0.29 -1.25 16 17 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 18 C -0.14 -1.38 5.60 -24.91 -0.14 -1.52 16 19 C 0.04 0.34 6.40 -2.84 -0.02 0.32 16 20 N -0.52 -4.75 5.41 -232.38 -1.26 -6.01 16 21 C 0.09 0.67 5.52 -4.98 -0.03 0.64 16 22 C -0.12 -1.02 4.21 -104.62 -0.44 -1.46 16 23 C -0.11 -0.94 8.63 -39.58 -0.34 -1.28 16 24 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 25 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 26 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 27 C -0.11 -0.93 7.42 -39.58 -0.29 -1.23 16 28 C 0.03 0.29 5.94 -2.04 -0.01 0.27 16 29 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.34 4.77 7.94 -39.30 -0.31 4.45 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.02 0.31 8.11 -51.93 -0.42 -0.11 16 40 H 0.06 0.70 8.01 -51.93 -0.42 0.28 16 41 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.47 5.22 -51.93 -0.27 0.20 16 44 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 45 H 0.08 0.57 7.98 -51.93 -0.41 0.16 16 46 H 0.12 0.86 6.91 -52.49 -0.36 0.50 16 47 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 48 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 49 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 50 H 0.12 0.91 7.85 -52.49 -0.41 0.49 16 51 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.07 0.65 4.05 -51.93 -0.21 0.44 16 LS Contribution 400.55 15.07 6.04 6.04 Total: -1.00 -30.31 400.55 -12.81 -43.12 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -9.42 Total: 1.87 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -3.20 Total: -24.59 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -1.20 Total: -43.29 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.31 -12.81 -43.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602647363.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.489 kcal (2) G-P(sol) polarization free energy of solvation -30.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds