Wall clock time and date at job start Tue Mar 31 2020 11:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47939 * 2 1 4 4 C 1.53001 * 109.47199 * 120.00562 * 2 1 3 5 5 C 1.50703 * 109.46765 * 294.99491 * 4 2 1 6 6 H 1.07993 * 120.00160 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00022 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99704 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00194 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47481 * 90.00198 * 9 7 5 11 11 H 1.48505 * 109.47121 * 210.00395 * 9 7 5 12 12 H 1.48503 * 109.46989 * 329.99913 * 9 7 5 13 13 C 1.53004 * 109.47037 * 239.99998 * 2 1 3 14 14 N 1.46902 * 109.46842 * 65.00024 * 13 2 1 15 15 C 1.46908 * 110.99570 * 180.02562 * 14 13 2 16 16 C 1.53001 * 109.46463 * 180.02562 * 15 14 13 17 17 H 1.08996 * 110.90815 * 302.58637 * 16 15 14 18 18 C 1.55142 * 110.99002 * 66.45949 * 16 15 14 19 19 C 1.54312 * 103.17714 * 153.82761 * 18 16 15 20 20 N 1.47443 * 107.23612 * 337.62814 * 19 18 16 21 21 C 1.46900 * 111.00227 * 236.74273 * 20 19 18 22 22 C 1.50701 * 109.47223 * 69.87126 * 21 20 19 23 23 C 1.38237 * 119.99983 * 269.73152 * 22 21 20 24 24 C 1.38234 * 120.00040 * 179.76630 * 23 22 21 25 25 C 1.38236 * 119.99767 * 0.48055 * 24 23 22 26 26 C 1.38234 * 120.00212 * 359.78937 * 25 24 23 27 27 C 1.38234 * 120.00075 * 89.99917 * 22 21 20 28 28 C 1.47844 * 108.56494 * 359.01050 * 20 19 18 29 29 H 1.08993 * 109.46963 * 59.99422 * 1 2 3 30 30 H 1.08990 * 109.47459 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46791 * 300.00005 * 1 2 3 32 32 H 1.09001 * 109.47278 * 54.98979 * 4 2 1 33 33 H 1.09001 * 109.47703 * 174.99644 * 4 2 1 34 34 H 0.96998 * 119.99211 * 179.97438 * 8 7 5 35 35 H 1.09010 * 109.46834 * 305.00423 * 13 2 1 36 36 H 1.09001 * 109.47455 * 185.00447 * 13 2 1 37 37 H 1.00892 * 110.99827 * 56.05032 * 14 13 2 38 38 H 1.08998 * 109.46832 * 60.00392 * 15 14 13 39 39 H 1.08993 * 109.47124 * 300.00310 * 15 14 13 40 40 H 1.09002 * 110.70816 * 35.35609 * 18 16 15 41 41 H 1.09005 * 110.70106 * 272.29750 * 18 16 15 42 42 H 1.08997 * 109.89327 * 97.03090 * 19 18 16 43 43 H 1.09001 * 109.89155 * 218.05905 * 19 18 16 44 44 H 1.08999 * 109.47147 * 189.87070 * 21 20 19 45 45 H 1.08994 * 109.46907 * 309.87190 * 21 20 19 46 46 H 1.08001 * 119.99775 * 359.97438 * 23 22 21 47 47 H 1.08004 * 120.00223 * 180.25236 * 24 23 22 48 48 H 1.08001 * 119.99989 * 179.77215 * 25 24 23 49 49 H 1.07995 * 120.00006 * 179.97438 * 26 25 24 50 50 H 1.08000 * 119.99976 * 0.02562 * 27 22 21 51 51 H 1.08999 * 110.37744 * 142.93014 * 28 20 19 52 52 H 1.09007 * 110.37325 * 265.15824 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0801 0.9740 2.3757 7 6 1.9924 -0.4024 3.7283 8 7 2.6756 -1.5196 3.8511 9 14 1.4978 0.5619 5.2497 10 1 0.1704 0.0936 5.7228 11 1 2.5068 0.3516 6.3188 12 1 1.4231 2.0073 4.9170 13 6 2.0400 -0.7213 -1.2493 14 7 1.6513 0.0375 -2.4456 15 6 2.1247 -0.6272 -3.6673 16 6 1.7023 0.1910 -4.8892 17 1 0.6207 0.3228 -4.9141 18 6 2.4300 1.5609 -4.9193 19 6 2.4468 1.9174 -6.4205 20 7 2.2980 0.6568 -7.1706 21 6 3.4169 0.4635 -8.1026 22 6 4.6749 0.1753 -7.3245 23 6 5.4950 1.2147 -6.9269 24 6 6.6465 0.9507 -6.2089 25 6 6.9829 -0.3533 -5.8971 26 6 6.1656 -1.3931 -6.2995 27 6 5.0116 -1.1287 -7.0130 28 6 2.2147 -0.4590 -6.2042 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7199 1.2951 33 1 3.1263 -0.7997 1.2056 34 1 2.9228 -1.8424 4.7317 35 1 1.6052 -1.7199 -1.2952 36 1 3.1263 -0.7996 -1.2057 37 1 1.9881 0.9872 -2.3966 38 1 1.6902 -1.6249 -3.7297 39 1 3.2115 -0.7052 -3.6406 40 1 3.4453 1.4666 -4.5341 41 1 1.8719 2.3062 -4.3524 42 1 1.6182 2.5865 -6.6522 43 1 3.3921 2.3953 -6.6777 44 1 3.1985 -0.3752 -8.7637 45 1 3.5557 1.3672 -8.6960 46 1 5.2344 2.2331 -7.1743 47 1 7.2851 1.7631 -5.8948 48 1 7.8844 -0.5598 -5.3394 49 1 6.4287 -2.4118 -6.0563 50 1 4.3733 -1.9411 -7.3278 51 1 1.5094 -1.2126 -6.5544 52 1 3.1985 -0.9029 -6.0514 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602647363.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:23 Heat of formation + Delta-G solvation = -4.492943 kcal Electronic energy + Delta-G solvation = -26450.590020 eV Core-core repulsion = 23027.027228 eV Total energy + Delta-G solvation = -3423.562792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20731 -39.29897 -38.18488 -35.98552 -34.45592 -33.29022 -32.01189 -31.11701 -30.08909 -28.85181 -27.47451 -26.27093 -25.10672 -23.88124 -23.39197 -22.62487 -21.36858 -21.21977 -20.60730 -18.49058 -17.79150 -17.38375 -16.79219 -16.57759 -16.36448 -16.08324 -15.88304 -15.57291 -15.41045 -14.83910 -14.61272 -14.48999 -14.22151 -14.18513 -14.10316 -13.65357 -13.54816 -13.26820 -13.25631 -12.97042 -12.73589 -12.61361 -12.46968 -12.24836 -12.21945 -12.17157 -12.10327 -11.94451 -11.75159 -11.62956 -11.52783 -11.42690 -11.09658 -10.88362 -10.54007 -9.85926 -9.69815 -9.35750 -9.23574 -8.18019 -6.27226 0.37930 0.44820 1.39911 1.41069 1.51943 2.41709 2.78627 3.07398 3.15398 3.23382 3.66949 3.81929 3.89989 3.92303 4.01368 4.09921 4.13169 4.21777 4.30220 4.33819 4.43005 4.46089 4.51015 4.56615 4.58152 4.69699 4.72354 4.77329 4.82609 4.87387 4.90497 4.93743 4.97246 5.02160 5.08502 5.09438 5.11038 5.24022 5.28174 5.41379 5.46162 5.50631 5.52278 5.55683 5.58236 5.59886 5.80498 5.88101 5.98960 6.06020 6.07414 6.11289 6.30762 6.48043 6.88768 7.41088 8.94199 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017575 B = 0.002411 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.749363 B =11608.487119 C =12385.779392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 H 0.053 0.947 4 C 0.032 3.968 5 C -0.529 4.529 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.078 3.922 14 N -0.680 5.680 15 C 0.075 3.925 16 C -0.084 4.084 17 H 0.085 0.915 18 C -0.134 4.134 19 C 0.040 3.960 20 N -0.520 5.520 21 C 0.087 3.913 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.131 4.131 25 C -0.133 4.133 26 C -0.133 4.133 27 C -0.117 4.117 28 C 0.034 3.966 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.038 0.962 32 H -0.011 1.011 33 H -0.016 1.016 34 H 0.262 0.738 35 H 0.061 0.939 36 H 0.013 0.987 37 H 0.341 0.659 38 H 0.069 0.931 39 H 0.018 0.982 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.131 0.869 47 H 0.133 0.867 48 H 0.130 0.870 49 H 0.132 0.868 50 H 0.131 0.869 51 H 0.081 0.919 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.544 4.976 -27.690 28.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 H 0.071 0.929 4 C -0.005 4.005 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.187 1.187 13 C -0.052 4.052 14 N -0.311 5.311 15 C -0.054 4.054 16 C -0.103 4.103 17 H 0.103 0.897 18 C -0.172 4.172 19 C -0.087 4.087 20 N -0.242 5.242 21 C -0.041 4.041 22 C -0.125 4.125 23 C -0.136 4.136 24 C -0.149 4.149 25 C -0.151 4.151 26 C -0.151 4.151 27 C -0.135 4.135 28 C -0.094 4.094 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.008 0.992 33 H 0.003 0.997 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.031 0.969 37 H 0.159 0.841 38 H 0.087 0.913 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.149 0.851 47 H 0.151 0.849 48 H 0.148 0.852 49 H 0.150 0.850 50 H 0.149 0.851 51 H 0.100 0.900 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.503 4.617 -27.939 28.534 hybrid contribution 1.900 0.094 1.823 2.635 sum 5.403 4.711 -26.116 27.082 Atomic orbital electron populations 1.21476 0.94556 1.00380 1.00552 1.21006 0.96813 0.98316 0.93091 0.92898 1.19012 0.93987 0.94709 0.92800 1.21641 1.34377 1.08602 0.92046 0.92044 1.25969 0.95247 0.96124 1.02695 1.70110 1.40323 1.23004 1.24275 0.85497 0.78012 0.79302 0.78560 1.19860 1.20917 1.18697 1.21844 0.96255 0.97434 0.89634 1.60456 1.63890 1.05784 1.00989 1.21815 0.96411 0.98113 0.89079 1.22252 1.00733 0.94560 0.92763 0.89678 1.22761 0.99893 0.97426 0.97167 1.22883 1.01844 0.92426 0.91590 1.64000 1.39869 1.02345 1.17965 1.21469 0.84732 1.03603 0.94286 1.20721 0.97717 0.93613 1.00459 1.21281 0.94592 0.99172 0.98564 1.21423 0.97589 0.97261 0.98647 1.21440 1.00380 0.93231 1.00059 1.21420 0.95098 0.99976 0.98603 1.21247 0.96832 0.96602 0.98840 1.23401 1.01360 0.94226 0.90441 0.91408 0.94658 0.94306 0.99213 0.99731 0.92943 0.92037 0.96861 0.84099 0.91254 0.96356 0.92823 0.90354 0.90094 0.91623 0.89118 0.88937 0.85076 0.84897 0.85171 0.85047 0.85137 0.90032 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.35 8.89 71.98 0.64 -3.71 16 2 C -0.07 -3.05 2.48 -10.79 -0.03 -3.08 16 3 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 4 C 0.03 1.74 4.45 29.85 0.13 1.87 16 5 C -0.53 -30.24 8.41 25.60 0.22 -30.02 16 6 H 0.06 3.38 7.05 -2.91 -0.02 3.36 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 8 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 9 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 13 C 0.08 2.74 5.07 86.30 0.44 3.17 16 14 N -0.68 -19.22 5.96 -513.85 -3.06 -22.28 16 15 C 0.08 1.81 5.21 86.30 0.45 2.26 16 16 C -0.08 -1.67 3.31 -9.24 -0.03 -1.70 16 17 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 18 C -0.13 -2.47 5.60 31.77 0.18 -2.29 16 19 C 0.04 0.64 6.40 86.64 0.55 1.19 16 20 N -0.52 -8.55 5.41 -889.11 -4.81 -13.36 16 21 C 0.09 1.19 5.52 85.56 0.47 1.66 16 22 C -0.12 -1.94 4.21 -19.87 -0.08 -2.02 16 23 C -0.12 -1.84 8.63 22.27 0.19 -1.65 16 24 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 25 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 26 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 27 C -0.12 -1.90 7.42 22.27 0.17 -1.73 16 28 C 0.03 0.60 5.94 86.94 0.52 1.11 16 29 H 0.07 2.27 7.75 -2.39 -0.02 2.26 16 30 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.04 1.59 6.95 -2.39 -0.02 1.58 16 32 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 33 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 34 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.06 2.22 8.14 -2.38 -0.02 2.21 16 36 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.34 9.18 7.94 -89.70 -0.71 8.47 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.02 0.47 8.11 -2.39 -0.02 0.45 16 40 H 0.05 1.11 8.01 -2.39 -0.02 1.09 16 41 H 0.08 1.42 8.11 -2.38 -0.02 1.40 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.07 0.93 5.22 -2.39 -0.01 0.92 16 44 H 0.09 1.12 8.09 -2.39 -0.02 1.11 16 45 H 0.09 1.08 7.98 -2.39 -0.02 1.06 16 46 H 0.13 1.65 6.91 -2.91 -0.02 1.63 16 47 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 48 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 49 H 0.13 1.86 8.06 -2.91 -0.02 1.83 16 50 H 0.13 1.80 7.85 -2.91 -0.02 1.78 16 51 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 52 H 0.06 1.18 4.05 -2.38 -0.01 1.17 16 Total: -1.00 -64.59 400.55 -0.46 -65.05 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.16 Total: 21.98 kcal Atomic # 6 Polarization: -45.62 SS G_CDS: 4.95 Total: -40.68 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -7.59 Total: -93.19 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -64.59 -0.46 -65.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602647363.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.552 kcal (2) G-P(sol) polarization free energy of solvation -64.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds