Wall clock time and date at job start Tue Mar 31 2020 11:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47025 * 2 1 4 4 C 1.53002 * 109.47232 * 119.99471 * 2 1 3 5 5 C 1.50703 * 109.47207 * 295.00178 * 4 2 1 6 6 H 1.07994 * 119.99603 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99838 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00380 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99848 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47261 * 239.99776 * 9 7 5 12 12 H 1.48500 * 109.47454 * 119.99769 * 9 7 5 13 13 C 1.53001 * 109.47401 * 239.99579 * 2 1 3 14 14 N 1.46903 * 109.46812 * 64.99890 * 13 2 1 15 15 C 1.46903 * 110.99546 * 180.02562 * 14 13 2 16 16 C 1.53003 * 109.46677 * 180.02562 * 15 14 13 17 17 H 1.08997 * 110.64566 * 56.69614 * 16 15 14 18 18 C 1.54600 * 110.72312 * 293.54007 * 16 15 14 19 19 C 1.53990 * 105.13972 * 219.68828 * 18 16 15 20 20 N 1.47893 * 107.06054 * 358.77731 * 19 18 16 21 21 C 1.46899 * 111.00288 * 145.84592 * 20 19 18 22 22 C 1.50699 * 109.46962 * 290.12527 * 21 20 19 23 23 C 1.38237 * 120.00112 * 269.72617 * 22 21 20 24 24 C 1.38234 * 119.99998 * 179.76559 * 23 22 21 25 25 C 1.38234 * 119.99965 * 0.50601 * 24 23 22 26 26 C 1.38229 * 119.99924 * 359.74890 * 25 24 23 27 27 C 1.38234 * 119.99988 * 89.99776 * 22 21 20 28 28 C 1.48530 * 105.82181 * 25.32889 * 20 19 18 29 29 H 1.09006 * 109.47274 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47590 * 300.00099 * 1 2 3 31 31 H 1.08995 * 109.47594 * 60.00643 * 1 2 3 32 32 H 1.09005 * 109.47493 * 175.00178 * 4 2 1 33 33 H 1.08998 * 109.47006 * 55.00141 * 4 2 1 34 34 H 0.97001 * 119.99667 * 0.02562 * 8 7 5 35 35 H 1.09003 * 109.47197 * 184.99522 * 13 2 1 36 36 H 1.08997 * 109.46877 * 305.00063 * 13 2 1 37 37 H 1.00898 * 110.99711 * 56.04850 * 14 13 2 38 38 H 1.09002 * 109.46769 * 299.99368 * 15 14 13 39 39 H 1.08993 * 109.47556 * 60.00039 * 15 14 13 40 40 H 1.09007 * 110.30625 * 338.60908 * 18 16 15 41 41 H 1.09000 * 110.30396 * 100.66649 * 18 16 15 42 42 H 1.09004 * 109.91906 * 118.13339 * 19 18 16 43 43 H 1.09000 * 109.91550 * 239.22532 * 19 18 16 44 44 H 1.09005 * 109.47226 * 50.12273 * 21 20 19 45 45 H 1.09000 * 109.47587 * 170.12567 * 21 20 19 46 46 H 1.08005 * 119.99492 * 359.97438 * 23 22 21 47 47 H 1.07996 * 119.99898 * 180.23019 * 24 23 22 48 48 H 1.08002 * 119.99508 * 179.72584 * 25 24 23 49 49 H 1.08001 * 119.99777 * 179.97438 * 26 25 24 50 50 H 1.07994 * 120.00082 * 0.02562 * 27 22 21 51 51 H 1.08998 * 110.67049 * 202.35889 * 28 20 19 52 52 H 1.09005 * 110.66776 * 79.23144 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9747 2.3756 7 6 1.9932 -0.4014 3.7283 8 7 2.6764 -1.5184 3.8513 9 14 1.4984 0.5630 5.2496 10 1 0.7410 1.7741 4.8434 11 1 2.7162 0.9688 5.9963 12 1 0.6451 -0.2866 6.1186 13 6 2.0400 -0.7213 -1.2492 14 7 1.6513 0.0373 -2.4456 15 6 2.1248 -0.6274 -3.6671 16 6 1.7024 0.1907 -4.8892 17 1 2.0790 1.2110 -4.8175 18 6 0.1645 0.1848 -5.0465 19 6 -0.0844 0.0609 -6.5611 20 7 1.2406 0.0308 -7.2175 21 6 1.2210 -0.8357 -8.4035 22 6 1.0934 -2.2741 -7.9726 23 6 2.2277 -3.0272 -7.7331 24 6 2.1105 -4.3452 -7.3331 25 6 0.8593 -4.9132 -7.1827 26 6 -0.2748 -4.1618 -7.4273 27 6 -0.1578 -2.8422 -7.8222 28 6 2.1869 -0.4861 -6.1961 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 3.1263 -0.7994 1.2057 33 1 1.6054 -1.7197 1.2953 34 1 2.9330 -2.0194 3.0613 35 1 3.1263 -0.7995 -1.2055 36 1 1.6054 -1.7199 -1.2950 37 1 1.9881 0.9872 -2.3966 38 1 3.2117 -0.7052 -3.6404 39 1 1.6905 -1.6251 -3.7296 40 1 -0.2663 -0.6677 -4.5212 41 1 -0.2581 1.1151 -4.6669 42 1 -0.6254 -0.8610 -6.7744 43 1 -0.6578 0.9179 -6.9145 44 1 0.3732 -0.5689 -9.0346 45 1 2.1466 -0.7052 -8.9642 46 1 3.2053 -2.5847 -7.8552 47 1 2.9966 -4.9324 -7.1424 48 1 0.7679 -5.9443 -6.8745 49 1 -1.2524 -4.6057 -7.3102 50 1 -1.0439 -2.2553 -8.0139 51 1 3.2079 -0.1845 -6.4298 52 1 2.1136 -1.5709 -6.1177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602647365.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:28 Heat of formation + Delta-G solvation = 7.936940 kcal Electronic energy + Delta-G solvation = -26292.397796 eV Core-core repulsion = 22869.374004 eV Total energy + Delta-G solvation = -3423.023792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.49616 -38.54824 -36.89382 -34.74471 -33.16542 -31.89935 -31.36252 -30.19909 -29.23253 -26.70846 -26.29295 -25.09322 -23.63216 -22.86472 -22.16979 -22.02746 -20.69579 -20.33064 -19.17150 -17.16424 -16.67913 -16.29983 -16.13359 -15.53471 -15.37292 -15.06879 -14.58296 -14.21722 -14.10045 -13.82137 -13.72746 -13.66519 -13.40721 -13.20976 -12.96098 -12.50971 -12.07237 -11.96610 -11.76450 -11.69663 -11.58879 -11.54916 -11.42814 -11.31817 -11.02732 -10.94627 -10.87666 -10.63083 -10.59248 -10.16339 -10.07545 -9.79082 -9.42214 -9.21770 -9.07609 -8.66711 -8.44247 -8.27331 -8.14160 -6.30644 -3.98426 0.98669 1.05918 3.41161 3.46264 3.50327 3.63605 3.82284 4.21714 4.39524 4.48349 4.58281 4.61988 4.68162 4.77442 4.80042 4.82802 5.00673 5.14662 5.16173 5.27734 5.34463 5.40800 5.43041 5.45906 5.52753 5.55385 5.66672 5.67237 5.69267 5.70468 5.79210 5.90057 5.92179 6.07502 6.09929 6.14068 6.16302 6.20040 6.27764 6.34593 6.47026 6.61668 6.65102 6.65963 6.73791 6.91652 7.08969 7.14389 7.30941 7.44169 7.58779 7.65984 8.29690 8.53599 8.95078 9.73129 11.09940 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020242 B = 0.002234 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.933751 B =12527.858081 C =13137.924141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.075 4.075 3 H 0.054 0.946 4 C 0.013 3.987 5 C -0.592 4.592 6 H 0.051 0.949 7 C 0.011 3.989 8 N -0.918 5.918 9 Si 1.072 2.928 10 H -0.289 1.289 11 H -0.288 1.288 12 H -0.288 1.288 13 C 0.064 3.936 14 N -0.684 5.684 15 C 0.068 3.932 16 C -0.086 4.086 17 H 0.079 0.921 18 C -0.111 4.111 19 C 0.023 3.977 20 N -0.505 5.505 21 C 0.082 3.918 22 C -0.120 4.120 23 C -0.107 4.107 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.110 4.110 28 C 0.029 3.971 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.002 0.998 33 H 0.006 0.994 34 H 0.268 0.732 35 H 0.022 0.978 36 H 0.064 0.936 37 H 0.337 0.663 38 H 0.025 0.975 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.121 0.879 49 H 0.121 0.879 50 H 0.121 0.879 51 H 0.077 0.923 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.488 -2.026 -28.449 28.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.094 4.094 3 H 0.073 0.927 4 C -0.024 4.024 5 C -0.631 4.631 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.555 5.555 9 Si 0.901 3.099 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.214 1.214 13 C -0.065 4.065 14 N -0.315 5.315 15 C -0.062 4.062 16 C -0.106 4.106 17 H 0.097 0.903 18 C -0.149 4.149 19 C -0.104 4.104 20 N -0.227 5.227 21 C -0.046 4.046 22 C -0.121 4.121 23 C -0.126 4.126 24 C -0.139 4.139 25 C -0.137 4.137 26 C -0.138 4.138 27 C -0.129 4.129 28 C -0.099 4.099 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.021 0.979 33 H 0.025 0.975 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.154 0.846 38 H 0.043 0.957 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.139 0.861 49 H 0.139 0.861 50 H 0.139 0.861 51 H 0.096 0.904 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.885 -1.741 -27.028 27.361 hybrid contribution 0.681 -0.820 -1.339 1.712 sum -3.205 -2.561 -28.367 28.662 Atomic orbital electron populations 1.21565 0.95519 1.00461 1.00291 1.21049 0.96129 0.98805 0.93391 0.92719 1.19258 0.95089 0.95618 0.92437 1.22091 1.38493 1.10248 0.92231 0.93117 1.25828 0.94754 0.97177 1.01406 1.70720 1.36288 1.14936 1.33526 0.83500 0.76228 0.75062 0.75080 1.21532 1.21458 1.21418 1.22145 0.96962 0.97678 0.89696 1.60489 1.63979 1.05670 1.01314 1.21912 0.96911 0.97843 0.89496 1.22038 0.95946 0.99590 0.92982 0.90262 1.22273 0.95628 1.03028 0.93966 1.23061 0.91380 1.01214 0.94787 1.65130 1.06426 1.45350 1.05752 1.21379 1.03373 0.85973 0.93901 1.20579 0.93476 0.97291 1.00795 1.21078 0.98118 0.94095 0.99298 1.21183 0.97681 0.95311 0.99682 1.21194 0.92677 1.00037 0.99776 1.21179 0.98728 0.94382 0.99472 1.21092 0.96806 0.95135 0.99877 1.23470 0.96742 0.98979 0.90753 0.94366 0.92697 0.93759 0.97928 0.97543 0.92147 0.96005 0.91789 0.84561 0.95661 0.91443 0.91101 0.90944 0.93076 0.90621 0.89994 0.89743 0.86104 0.86005 0.86074 0.86053 0.86144 0.90423 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.15 0.33 -2.08 16 2 C -0.07 -1.56 2.48 -90.62 -0.22 -1.78 16 3 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.01 0.35 3.76 -27.88 -0.10 0.24 16 5 C -0.59 -16.99 8.41 -34.44 -0.29 -17.28 16 6 H 0.05 1.44 7.06 -52.49 -0.37 1.07 16 7 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 8 N -0.92 -28.62 13.65 55.43 0.76 -27.86 16 9 Si 1.07 25.86 29.90 -169.99 -5.08 20.78 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.06 1.12 5.07 -3.82 -0.02 1.10 16 14 N -0.68 -9.87 5.77 -113.77 -0.66 -10.53 16 15 C 0.07 0.84 5.01 -3.82 -0.02 0.82 16 16 C -0.09 -0.92 3.25 -88.75 -0.29 -1.21 16 17 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 18 C -0.11 -1.18 6.33 -25.37 -0.16 -1.34 16 19 C 0.02 0.22 6.46 -2.76 -0.02 0.20 16 20 N -0.50 -4.72 5.54 -231.90 -1.28 -6.00 16 21 C 0.08 0.64 5.69 -4.98 -0.03 0.62 16 22 C -0.12 -1.01 3.95 -104.62 -0.41 -1.42 16 23 C -0.11 -0.90 7.51 -39.58 -0.30 -1.19 16 24 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 25 C -0.12 -0.99 10.05 -39.59 -0.40 -1.38 16 26 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 27 C -0.11 -0.93 8.19 -39.58 -0.32 -1.25 16 28 C 0.03 0.28 5.51 -1.90 -0.01 0.27 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 1.18 6.95 -51.93 -0.36 0.82 16 31 H 0.04 0.79 7.75 -51.93 -0.40 0.38 16 32 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 33 H 0.01 0.17 8.01 -51.93 -0.42 -0.24 16 34 H 0.27 8.34 7.22 -40.82 -0.29 8.04 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.34 4.68 8.73 -39.29 -0.34 4.33 16 38 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 40 H 0.07 0.85 7.80 -51.92 -0.41 0.44 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.46 4.86 -51.93 -0.25 0.21 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.58 8.03 -51.93 -0.42 0.16 16 45 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 46 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 47 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 48 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 49 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 50 H 0.12 0.87 7.17 -52.49 -0.38 0.49 16 51 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 52 H 0.06 0.63 4.77 -51.93 -0.25 0.39 16 LS Contribution 400.31 15.07 6.03 6.03 Total: -1.00 -30.99 400.31 -12.82 -43.82 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -9.43 Total: 2.01 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: -3.16 Total: -28.25 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -1.18 Total: -44.39 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.08 Total: 20.78 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.99 -12.82 -43.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602647365.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.755 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds