Wall clock time and date at job start Tue Mar 31 2020 11:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47025 * 2 1 4 4 C 1.53002 * 109.47232 * 119.99471 * 2 1 3 5 5 C 1.50703 * 109.47207 * 295.00178 * 4 2 1 6 6 H 1.07994 * 119.99603 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99838 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00380 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99848 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47261 * 239.99776 * 9 7 5 12 12 H 1.48500 * 109.47454 * 119.99769 * 9 7 5 13 13 C 1.53001 * 109.47401 * 239.99579 * 2 1 3 14 14 N 1.46903 * 109.46812 * 64.99890 * 13 2 1 15 15 C 1.46903 * 110.99546 * 180.02562 * 14 13 2 16 16 C 1.53003 * 109.46677 * 180.02562 * 15 14 13 17 17 H 1.08997 * 110.64566 * 56.69614 * 16 15 14 18 18 C 1.54600 * 110.72312 * 293.54007 * 16 15 14 19 19 C 1.53990 * 105.13972 * 219.68828 * 18 16 15 20 20 N 1.47893 * 107.06054 * 358.77731 * 19 18 16 21 21 C 1.46899 * 111.00288 * 145.84592 * 20 19 18 22 22 C 1.50699 * 109.46962 * 290.12527 * 21 20 19 23 23 C 1.38237 * 120.00112 * 269.72617 * 22 21 20 24 24 C 1.38234 * 119.99998 * 179.76559 * 23 22 21 25 25 C 1.38234 * 119.99965 * 0.50601 * 24 23 22 26 26 C 1.38229 * 119.99924 * 359.74890 * 25 24 23 27 27 C 1.38234 * 119.99988 * 89.99776 * 22 21 20 28 28 C 1.48530 * 105.82181 * 25.32889 * 20 19 18 29 29 H 1.09006 * 109.47274 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47590 * 300.00099 * 1 2 3 31 31 H 1.08995 * 109.47594 * 60.00643 * 1 2 3 32 32 H 1.09005 * 109.47493 * 175.00178 * 4 2 1 33 33 H 1.08998 * 109.47006 * 55.00141 * 4 2 1 34 34 H 0.97001 * 119.99667 * 0.02562 * 8 7 5 35 35 H 1.09003 * 109.47197 * 184.99522 * 13 2 1 36 36 H 1.08997 * 109.46877 * 305.00063 * 13 2 1 37 37 H 1.00898 * 110.99711 * 56.04850 * 14 13 2 38 38 H 1.09002 * 109.46769 * 299.99368 * 15 14 13 39 39 H 1.08993 * 109.47556 * 60.00039 * 15 14 13 40 40 H 1.09007 * 110.30625 * 338.60908 * 18 16 15 41 41 H 1.09000 * 110.30396 * 100.66649 * 18 16 15 42 42 H 1.09004 * 109.91906 * 118.13339 * 19 18 16 43 43 H 1.09000 * 109.91550 * 239.22532 * 19 18 16 44 44 H 1.09005 * 109.47226 * 50.12273 * 21 20 19 45 45 H 1.09000 * 109.47587 * 170.12567 * 21 20 19 46 46 H 1.08005 * 119.99492 * 359.97438 * 23 22 21 47 47 H 1.07996 * 119.99898 * 180.23019 * 24 23 22 48 48 H 1.08002 * 119.99508 * 179.72584 * 25 24 23 49 49 H 1.08001 * 119.99777 * 179.97438 * 26 25 24 50 50 H 1.07994 * 120.00082 * 0.02562 * 27 22 21 51 51 H 1.08998 * 110.67049 * 202.35889 * 28 20 19 52 52 H 1.09005 * 110.66776 * 79.23144 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9747 2.3756 7 6 1.9932 -0.4014 3.7283 8 7 2.6764 -1.5184 3.8513 9 14 1.4984 0.5630 5.2496 10 1 0.7410 1.7741 4.8434 11 1 2.7162 0.9688 5.9963 12 1 0.6451 -0.2866 6.1186 13 6 2.0400 -0.7213 -1.2492 14 7 1.6513 0.0373 -2.4456 15 6 2.1248 -0.6274 -3.6671 16 6 1.7024 0.1907 -4.8892 17 1 2.0790 1.2110 -4.8175 18 6 0.1645 0.1848 -5.0465 19 6 -0.0844 0.0609 -6.5611 20 7 1.2406 0.0308 -7.2175 21 6 1.2210 -0.8357 -8.4035 22 6 1.0934 -2.2741 -7.9726 23 6 2.2277 -3.0272 -7.7331 24 6 2.1105 -4.3452 -7.3331 25 6 0.8593 -4.9132 -7.1827 26 6 -0.2748 -4.1618 -7.4273 27 6 -0.1578 -2.8422 -7.8222 28 6 2.1869 -0.4861 -6.1961 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 3.1263 -0.7994 1.2057 33 1 1.6054 -1.7197 1.2953 34 1 2.9330 -2.0194 3.0613 35 1 3.1263 -0.7995 -1.2055 36 1 1.6054 -1.7199 -1.2950 37 1 1.9881 0.9872 -2.3966 38 1 3.2117 -0.7052 -3.6404 39 1 1.6905 -1.6251 -3.7296 40 1 -0.2663 -0.6677 -4.5212 41 1 -0.2581 1.1151 -4.6669 42 1 -0.6254 -0.8610 -6.7744 43 1 -0.6578 0.9179 -6.9145 44 1 0.3732 -0.5689 -9.0346 45 1 2.1466 -0.7052 -8.9642 46 1 3.2053 -2.5847 -7.8552 47 1 2.9966 -4.9324 -7.1424 48 1 0.7679 -5.9443 -6.8745 49 1 -1.2524 -4.6057 -7.3102 50 1 -1.0439 -2.2553 -8.0139 51 1 3.2079 -0.1845 -6.4298 52 1 2.1136 -1.5709 -6.1177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602647365.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:28 Heat of formation + Delta-G solvation = -9.610080 kcal Electronic energy + Delta-G solvation = -26293.158692 eV Core-core repulsion = 22869.374004 eV Total energy + Delta-G solvation = -3423.784688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.17242 -39.33441 -38.30368 -36.18253 -34.60631 -33.33113 -31.98421 -31.08812 -30.04609 -28.49006 -27.53490 -26.27819 -25.05895 -23.89097 -23.40831 -22.72979 -21.49816 -21.32812 -20.66003 -18.86010 -17.78184 -17.10734 -16.96706 -16.46823 -16.13307 -16.02375 -15.85410 -15.66135 -15.46948 -15.11065 -15.00890 -14.60725 -14.36142 -14.06098 -13.92806 -13.67233 -13.63184 -13.19818 -13.14294 -12.89455 -12.76397 -12.55578 -12.53849 -12.34809 -12.20137 -12.12372 -11.93172 -11.92413 -11.78838 -11.64055 -11.55822 -11.43531 -11.30313 -10.56039 -10.53175 -9.83573 -9.69973 -9.39087 -9.35652 -8.66436 -6.35260 0.36975 0.44537 1.51750 1.61429 1.77703 2.56737 2.77903 3.04434 3.17928 3.20721 3.72759 3.82978 3.86056 3.92509 3.96104 4.07254 4.10200 4.20529 4.21890 4.33072 4.37562 4.40656 4.49239 4.54427 4.57966 4.65579 4.71368 4.72390 4.78431 4.80871 4.84046 4.85168 4.88511 5.02679 5.06188 5.08344 5.09925 5.11781 5.27788 5.31085 5.34655 5.37888 5.47760 5.51293 5.58438 5.59471 5.63719 5.91506 5.97518 6.04608 6.06811 6.09856 6.22099 6.44917 6.61693 7.45779 8.74342 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020242 B = 0.002234 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.933751 B =12527.858081 C =13137.924141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.067 4.067 3 H 0.054 0.946 4 C 0.016 3.984 5 C -0.603 4.603 6 H 0.052 0.948 7 C -0.044 4.044 8 N -0.943 5.943 9 Si 1.121 2.879 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.078 3.922 14 N -0.679 5.679 15 C 0.074 3.926 16 C -0.080 4.080 17 H 0.080 0.920 18 C -0.109 4.109 19 C 0.026 3.974 20 N -0.509 5.509 21 C 0.083 3.917 22 C -0.125 4.125 23 C -0.115 4.115 24 C -0.132 4.132 25 C -0.131 4.131 26 C -0.131 4.131 27 C -0.120 4.120 28 C 0.034 3.966 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.070 0.930 32 H -0.018 1.018 33 H -0.015 1.015 34 H 0.254 0.746 35 H 0.016 0.984 36 H 0.058 0.942 37 H 0.344 0.656 38 H 0.028 0.972 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.130 0.870 47 H 0.134 0.866 48 H 0.133 0.867 49 H 0.134 0.866 50 H 0.130 0.870 51 H 0.084 0.916 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.105 -0.873 -29.580 29.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 H 0.072 0.928 4 C -0.022 4.022 5 C -0.641 4.641 6 H 0.071 0.929 7 C -0.241 4.241 8 N -0.581 5.581 9 Si 0.942 3.058 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.051 4.051 14 N -0.310 5.310 15 C -0.056 4.056 16 C -0.100 4.100 17 H 0.099 0.901 18 C -0.147 4.147 19 C -0.101 4.101 20 N -0.231 5.231 21 C -0.044 4.044 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.150 4.150 25 C -0.149 4.149 26 C -0.149 4.149 27 C -0.138 4.138 28 C -0.094 4.094 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.000 1.000 33 H 0.003 0.997 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.076 0.924 37 H 0.162 0.838 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.148 0.852 47 H 0.152 0.848 48 H 0.151 0.849 49 H 0.152 0.848 50 H 0.148 0.852 51 H 0.102 0.898 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.504 -0.584 -28.198 28.561 hybrid contribution 0.879 -1.213 -1.051 1.830 sum -3.625 -1.798 -29.249 29.528 Atomic orbital electron populations 1.21460 0.94533 1.00218 1.00611 1.20889 0.96801 0.98277 0.92632 0.92792 1.19200 0.93677 0.94873 0.94450 1.22475 1.37912 1.10350 0.93356 0.92933 1.27418 0.94073 0.97301 1.05264 1.70862 1.38199 1.16222 1.32841 0.82892 0.76591 0.74557 0.71734 1.19326 1.20508 1.20542 1.21824 0.96362 0.97239 0.89665 1.60413 1.64016 1.05797 1.00809 1.21888 0.96981 0.97585 0.89114 1.21965 0.96065 0.99346 0.92618 0.90114 1.22224 0.95394 1.02208 0.94880 1.23036 0.91615 1.01699 0.93782 1.65149 1.06186 1.45797 1.05934 1.21424 1.04238 0.85394 0.93378 1.20676 0.93549 0.97591 1.00872 1.21264 0.98636 0.94255 0.99259 1.21429 0.98260 0.95642 0.99695 1.21453 0.92821 1.00820 0.99822 1.21431 0.99441 0.94606 0.99448 1.21290 0.97269 0.95393 0.99895 1.23403 0.97183 0.98554 0.90282 0.94876 0.94497 0.91157 0.99995 0.99670 0.93661 0.96547 0.92391 0.83832 0.95341 0.92241 0.92551 0.91158 0.92786 0.89920 0.89077 0.88960 0.85201 0.84845 0.84889 0.84817 0.85201 0.89777 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.33 8.89 71.98 0.64 -3.69 16 2 C -0.07 -2.78 2.48 -10.80 -0.03 -2.81 16 3 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 4 C 0.02 0.82 3.76 29.85 0.11 0.94 16 5 C -0.60 -34.86 8.41 25.60 0.22 -34.65 16 6 H 0.05 2.97 7.06 -2.91 -0.02 2.95 16 7 C -0.04 -2.60 5.46 84.65 0.46 -2.14 16 8 N -0.94 -59.84 13.65 21.45 0.29 -59.54 16 9 Si 1.12 51.43 29.90 68.60 2.05 53.48 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 13 C 0.08 2.72 5.07 86.30 0.44 3.15 16 14 N -0.68 -18.69 5.77 -513.87 -2.96 -21.65 16 15 C 0.07 1.73 5.01 86.30 0.43 2.16 16 16 C -0.08 -1.59 3.25 -9.58 -0.03 -1.62 16 17 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 18 C -0.11 -2.16 6.33 31.47 0.20 -1.96 16 19 C 0.03 0.45 6.46 86.45 0.56 1.00 16 20 N -0.51 -8.51 5.54 -887.59 -4.91 -13.42 16 21 C 0.08 1.15 5.69 85.56 0.49 1.64 16 22 C -0.13 -1.94 3.95 -19.87 -0.08 -2.02 16 23 C -0.12 -1.80 7.51 22.27 0.17 -1.63 16 24 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 25 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 26 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 27 C -0.12 -1.87 8.19 22.27 0.18 -1.69 16 28 C 0.03 0.60 5.51 86.65 0.48 1.07 16 29 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.04 1.55 6.95 -2.39 -0.02 1.53 16 31 H 0.07 2.37 7.75 -2.39 -0.02 2.35 16 32 H -0.02 -1.03 8.01 -2.38 -0.02 -1.05 16 33 H -0.01 -0.85 8.01 -2.39 -0.02 -0.87 16 34 H 0.25 16.35 7.22 -92.71 -0.67 15.68 16 35 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.34 8.90 8.73 -89.70 -0.78 8.12 16 38 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.06 1.51 8.08 -2.39 -0.02 1.49 16 40 H 0.06 1.28 7.80 -2.38 -0.02 1.27 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.05 0.89 4.86 -2.38 -0.01 0.88 16 43 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.09 1.09 8.03 -2.38 -0.02 1.08 16 45 H 0.09 1.14 8.08 -2.39 -0.02 1.12 16 46 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 47 H 0.13 1.67 8.06 -2.91 -0.02 1.64 16 48 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 49 H 0.13 1.65 8.06 -2.91 -0.02 1.62 16 50 H 0.13 1.68 7.17 -2.91 -0.02 1.66 16 51 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 52 H 0.06 1.09 4.77 -2.38 -0.01 1.08 16 Total: -1.00 -66.22 400.31 -0.44 -66.66 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.19 Total: 22.26 kcal Atomic # 6 Polarization: -52.68 SS G_CDS: 4.91 Total: -47.77 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -7.58 Total: -94.62 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.05 Total: 53.48 kcal Total: -66.22 -0.44 -66.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602647365.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.046 kcal (2) G-P(sol) polarization free energy of solvation -66.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds