Wall clock time and date at job start Tue Mar 31 2020 11:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47090 * 2 1 4 4 C 1.52994 * 109.47334 * 240.00263 * 2 1 3 5 5 C 1.50697 * 109.47328 * 64.99793 * 4 2 1 6 6 H 1.08001 * 120.00124 * 0.02562 * 5 4 2 7 7 C 1.37886 * 120.00223 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99908 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00092 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46897 * 60.00085 * 9 7 5 11 11 H 1.48499 * 109.47063 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46968 * 300.00464 * 9 7 5 13 13 C 1.52995 * 109.46978 * 119.99743 * 2 1 3 14 14 N 1.46894 * 109.47736 * 297.72525 * 13 2 1 15 15 C 1.46954 * 110.99799 * 306.81822 * 14 13 2 16 16 C 1.53048 * 109.36768 * 176.80856 * 15 14 13 17 17 N 1.46963 * 109.36581 * 58.39860 * 16 15 14 18 18 C 1.46892 * 111.00291 * 176.81598 * 17 16 15 19 19 C 1.46953 * 110.87647 * 300.68308 * 17 16 15 20 20 H 1.08995 * 109.49351 * 299.34744 * 19 17 16 21 21 C 1.53005 * 109.48589 * 179.28397 * 19 17 16 22 22 C 1.50701 * 109.46903 * 174.87731 * 21 19 17 23 23 C 1.38230 * 120.00052 * 274.20088 * 22 21 19 24 24 C 1.38237 * 119.99876 * 179.74846 * 23 22 21 25 25 C 1.38234 * 119.99887 * 0.54808 * 24 23 22 26 26 C 1.38230 * 120.00292 * 359.70790 * 25 24 23 27 27 C 1.38237 * 119.99863 * 0.02562 * 26 25 24 28 28 C 1.46949 * 111.00335 * 183.01856 * 14 13 2 29 29 H 1.08991 * 109.47264 * 300.00158 * 1 2 3 30 30 H 1.09002 * 109.46760 * 60.00055 * 1 2 3 31 31 H 1.08999 * 109.46600 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47569 * 185.00083 * 4 2 1 33 33 H 1.09007 * 109.47142 * 304.99813 * 4 2 1 34 34 H 0.96989 * 120.00131 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47115 * 177.71936 * 13 2 1 36 36 H 1.09000 * 109.46993 * 57.72620 * 13 2 1 37 37 H 1.09000 * 109.49376 * 56.84326 * 15 14 13 38 38 H 1.08995 * 109.49079 * 296.77747 * 15 14 13 39 39 H 1.09004 * 109.48916 * 298.43364 * 16 15 14 40 40 H 1.08996 * 109.49594 * 178.36568 * 16 15 14 41 41 H 1.08993 * 109.47418 * 63.64854 * 18 17 16 42 42 H 1.09001 * 109.47480 * 183.65510 * 18 17 16 43 43 H 1.09010 * 109.46929 * 303.65233 * 18 17 16 44 44 H 1.09002 * 109.46877 * 294.87507 * 21 19 17 45 45 H 1.08999 * 109.47196 * 54.88033 * 21 19 17 46 46 H 1.07995 * 120.00254 * 0.02562 * 23 22 21 47 47 H 1.08006 * 120.00024 * 180.27628 * 24 23 22 48 48 H 1.08005 * 120.00043 * 179.72376 * 25 24 23 49 49 H 1.08004 * 120.00287 * 180.02562 * 26 25 24 50 50 H 1.07992 * 120.00161 * 179.97438 * 27 26 25 51 51 H 1.08994 * 109.49459 * 63.22005 * 28 14 13 52 52 H 1.09007 * 109.50466 * 303.16061 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9746 -2.3757 7 6 1.9934 -0.4016 -3.7283 8 7 2.6766 -1.5186 -3.8512 9 14 1.4998 0.5635 -5.2496 10 1 2.0920 1.9239 -5.1864 11 1 1.9948 -0.1365 -6.4621 12 1 0.0198 0.6702 -5.3096 13 6 2.0400 -0.7212 1.2492 14 7 1.5958 0.0023 2.4481 15 6 1.9746 1.4204 2.3779 16 6 1.4260 2.1536 3.6042 17 7 1.9578 1.5291 4.8236 18 6 1.5136 2.2526 6.0224 19 6 1.5790 0.1110 4.8937 20 1 0.4926 0.0252 4.9128 21 6 2.1629 -0.5111 6.1638 22 6 1.6713 -1.9291 6.3004 23 6 0.4578 -2.1841 6.9113 24 6 0.0045 -3.4845 7.0319 25 6 0.7699 -4.5306 6.5518 26 6 1.9859 -4.2760 5.9456 27 6 2.4367 -2.9753 5.8201 28 6 2.1277 -0.6222 3.6673 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 3.1264 -0.7994 -1.2056 33 1 1.6055 -1.7198 -1.2952 34 1 2.9245 -1.8411 -4.7317 35 1 3.1292 -0.7567 1.2291 36 1 1.6437 -1.7364 1.2699 37 1 1.5586 1.8636 1.4731 38 1 3.0610 1.5061 2.3588 39 1 0.3377 2.0911 3.6086 40 1 1.7303 3.1996 3.5689 41 1 0.4288 2.1866 6.1054 42 1 1.9733 1.8092 6.9056 43 1 1.8090 3.2990 5.9455 44 1 3.2512 -0.5081 6.1026 45 1 1.8461 0.0684 7.0310 46 1 -0.1382 -1.3672 7.2904 47 1 -0.9457 -3.6834 7.5052 48 1 0.4178 -5.5469 6.6500 49 1 2.5838 -5.0933 5.5701 50 1 3.3868 -2.7764 5.3469 51 1 3.2158 -0.5597 3.6630 52 1 1.8235 -1.6684 3.7029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602651381.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:31 Heat of formation + Delta-G solvation = 22.074603 kcal Electronic energy + Delta-G solvation = -27034.293295 eV Core-core repulsion = 23611.882559 eV Total energy + Delta-G solvation = -3422.410737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.08520 -38.91887 -36.62983 -33.95279 -33.71920 -31.93600 -31.04581 -30.32677 -28.63005 -26.95727 -26.37973 -25.29064 -23.51640 -23.15139 -22.66799 -21.94750 -20.88817 -19.60269 -18.64192 -16.97311 -16.47777 -15.95918 -15.68572 -15.54035 -14.96379 -14.79676 -14.60808 -14.43874 -14.34796 -13.87667 -13.55173 -13.52658 -13.13428 -12.99440 -12.85761 -12.53262 -12.17238 -12.10733 -11.99364 -11.64572 -11.46764 -11.27248 -11.25294 -11.18273 -11.02037 -10.82959 -10.78161 -10.72311 -10.51434 -10.26441 -10.13296 -9.55593 -9.12247 -9.05712 -8.93207 -8.79822 -8.43619 -8.30225 -7.95095 -5.95338 -3.96434 1.19979 1.25718 3.35647 3.40002 3.42409 3.57836 3.82699 4.16899 4.50105 4.63055 4.68863 4.83535 4.86186 4.96235 4.97248 5.03368 5.23671 5.28667 5.31903 5.36986 5.40291 5.41714 5.47996 5.52919 5.59884 5.65986 5.72391 5.74659 5.82610 5.89374 5.90927 5.94345 6.06091 6.11899 6.18370 6.20394 6.31508 6.37549 6.45799 6.48763 6.56891 6.69455 6.84867 6.93067 6.96194 7.05744 7.17186 7.23129 7.44261 7.48504 7.71831 7.88185 8.04928 8.48875 9.09671 9.66673 11.16230 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015108 B = 0.002935 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.890737 B = 9537.169952 C =10824.059202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.085 4.085 3 H 0.057 0.943 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.063 3.937 14 N -0.536 5.536 15 C 0.051 3.949 16 C 0.060 3.940 17 N -0.541 5.541 18 C 0.021 3.979 19 C 0.096 3.904 20 H 0.050 0.950 21 C -0.077 4.077 22 C -0.076 4.076 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.126 4.126 26 C -0.117 4.117 27 C -0.113 4.113 28 C 0.063 3.937 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.012 0.988 33 H 0.016 0.984 34 H 0.260 0.740 35 H 0.027 0.973 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.038 0.962 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.024 0.976 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.122 0.878 51 H 0.037 0.963 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 0.678 24.983 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.104 4.104 3 H 0.075 0.925 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.260 5.260 15 C -0.077 4.077 16 C -0.068 4.068 17 N -0.266 5.266 18 C -0.127 4.127 19 C -0.013 4.013 20 H 0.068 0.932 21 C -0.115 4.115 22 C -0.077 4.077 23 C -0.135 4.135 24 C -0.137 4.137 25 C -0.144 4.144 26 C -0.135 4.135 27 C -0.131 4.131 28 C -0.066 4.066 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.042 0.958 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.140 0.860 51 H 0.055 0.945 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.473 0.567 24.834 24.963 hybrid contribution -0.226 0.371 -0.966 1.060 sum -2.699 0.938 23.868 24.038 Atomic orbital electron populations 1.21582 0.95733 1.00675 0.99953 1.21302 0.95972 0.99082 0.94035 0.92454 1.19104 0.95890 0.95552 0.90367 1.21193 1.34634 1.08255 0.91003 0.92672 1.25017 0.95347 0.95089 0.99054 1.69952 1.39033 1.21231 1.23460 0.86701 0.78896 0.80111 0.82543 1.20324 1.21381 1.20279 1.22279 0.97143 0.97832 0.89179 1.62198 1.59501 1.02137 1.02200 1.22244 0.98635 0.89120 0.97692 1.22190 0.97706 0.97867 0.89076 1.62150 1.59878 1.02073 1.02493 1.22421 0.98025 0.98987 0.93300 1.21609 0.98023 0.87482 0.94149 0.93191 1.20718 1.01529 0.91642 0.97588 1.19819 0.94842 0.95146 0.97888 1.21004 0.95838 0.96757 0.99886 1.21119 0.99651 0.92844 1.00097 1.21142 0.95088 0.99053 0.99078 1.21173 0.96455 0.96815 0.99069 1.21108 1.00005 0.92398 0.99595 1.22181 0.97253 0.98156 0.88995 0.94119 0.92808 0.94084 0.96956 0.96590 0.93055 0.95423 0.91262 0.89094 0.94337 0.94093 0.90494 0.95754 0.91169 0.91488 0.90215 0.90550 0.86427 0.86275 0.86281 0.86063 0.86012 0.94497 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.84 37.16 0.33 -2.08 16 2 C -0.09 -1.76 1.87 -90.62 -0.17 -1.93 16 3 H 0.06 1.19 6.12 -51.93 -0.32 0.87 16 4 C 0.03 0.73 4.45 -27.89 -0.12 0.61 16 5 C -0.51 -14.44 8.41 -34.44 -0.29 -14.73 16 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 C 0.06 1.13 4.53 -3.83 -0.02 1.11 16 14 N -0.54 -8.34 4.14 -234.48 -0.97 -9.31 16 15 C 0.05 0.75 5.15 -3.77 -0.02 0.73 16 16 C 0.06 0.73 5.62 -3.76 -0.02 0.71 16 17 N -0.54 -6.20 4.78 -234.73 -1.12 -7.32 16 18 C 0.02 0.19 9.14 60.06 0.55 0.74 16 19 C 0.10 1.11 2.02 -67.65 -0.14 0.98 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 21 C -0.08 -0.73 4.66 -27.88 -0.13 -0.86 16 22 C -0.08 -0.77 4.59 -104.62 -0.48 -1.25 16 23 C -0.12 -1.12 9.72 -39.58 -0.38 -1.50 16 24 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 25 C -0.13 -1.16 10.05 -39.59 -0.40 -1.56 16 26 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 27 C -0.11 -1.15 8.36 -39.58 -0.33 -1.48 16 28 C 0.06 0.85 4.50 -3.77 -0.02 0.83 16 29 H 0.04 0.72 7.67 -51.93 -0.40 0.32 16 30 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.09 1.41 5.94 -51.93 -0.31 1.10 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 41 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.07 0.55 6.13 -51.93 -0.32 0.23 16 43 H 0.07 0.55 8.13 -51.92 -0.42 0.12 16 44 H 0.08 0.77 8.06 -51.93 -0.42 0.36 16 45 H 0.08 0.64 6.04 -51.93 -0.31 0.33 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 48 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 49 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 50 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 51 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.08 1.08 6.60 -51.92 -0.34 0.74 16 LS Contribution 397.38 15.07 5.99 5.99 Total: -1.00 -30.44 397.38 -12.39 -42.83 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -9.47 Total: -1.37 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -2.53 Total: -21.19 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: -1.36 Total: -43.07 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.44 -12.39 -42.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602651381.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.904 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds