Wall clock time and date at job start Tue Mar 31 2020 11:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47090 * 2 1 4 4 C 1.52994 * 109.47334 * 240.00263 * 2 1 3 5 5 C 1.50697 * 109.47328 * 64.99793 * 4 2 1 6 6 H 1.08001 * 120.00124 * 0.02562 * 5 4 2 7 7 C 1.37886 * 120.00223 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99908 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00092 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46897 * 60.00085 * 9 7 5 11 11 H 1.48499 * 109.47063 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46968 * 300.00464 * 9 7 5 13 13 C 1.52995 * 109.46978 * 119.99743 * 2 1 3 14 14 N 1.46894 * 109.47736 * 297.72525 * 13 2 1 15 15 C 1.46954 * 110.99799 * 306.81822 * 14 13 2 16 16 C 1.53048 * 109.36768 * 176.80856 * 15 14 13 17 17 N 1.46963 * 109.36581 * 58.39860 * 16 15 14 18 18 C 1.46892 * 111.00291 * 176.81598 * 17 16 15 19 19 C 1.46953 * 110.87647 * 300.68308 * 17 16 15 20 20 H 1.08995 * 109.49351 * 299.34744 * 19 17 16 21 21 C 1.53005 * 109.48589 * 179.28397 * 19 17 16 22 22 C 1.50701 * 109.46903 * 174.87731 * 21 19 17 23 23 C 1.38230 * 120.00052 * 274.20088 * 22 21 19 24 24 C 1.38237 * 119.99876 * 179.74846 * 23 22 21 25 25 C 1.38234 * 119.99887 * 0.54808 * 24 23 22 26 26 C 1.38230 * 120.00292 * 359.70790 * 25 24 23 27 27 C 1.38237 * 119.99863 * 0.02562 * 26 25 24 28 28 C 1.46949 * 111.00335 * 183.01856 * 14 13 2 29 29 H 1.08991 * 109.47264 * 300.00158 * 1 2 3 30 30 H 1.09002 * 109.46760 * 60.00055 * 1 2 3 31 31 H 1.08999 * 109.46600 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47569 * 185.00083 * 4 2 1 33 33 H 1.09007 * 109.47142 * 304.99813 * 4 2 1 34 34 H 0.96989 * 120.00131 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47115 * 177.71936 * 13 2 1 36 36 H 1.09000 * 109.46993 * 57.72620 * 13 2 1 37 37 H 1.09000 * 109.49376 * 56.84326 * 15 14 13 38 38 H 1.08995 * 109.49079 * 296.77747 * 15 14 13 39 39 H 1.09004 * 109.48916 * 298.43364 * 16 15 14 40 40 H 1.08996 * 109.49594 * 178.36568 * 16 15 14 41 41 H 1.08993 * 109.47418 * 63.64854 * 18 17 16 42 42 H 1.09001 * 109.47480 * 183.65510 * 18 17 16 43 43 H 1.09010 * 109.46929 * 303.65233 * 18 17 16 44 44 H 1.09002 * 109.46877 * 294.87507 * 21 19 17 45 45 H 1.08999 * 109.47196 * 54.88033 * 21 19 17 46 46 H 1.07995 * 120.00254 * 0.02562 * 23 22 21 47 47 H 1.08006 * 120.00024 * 180.27628 * 24 23 22 48 48 H 1.08005 * 120.00043 * 179.72376 * 25 24 23 49 49 H 1.08004 * 120.00287 * 180.02562 * 26 25 24 50 50 H 1.07992 * 120.00161 * 179.97438 * 27 26 25 51 51 H 1.08994 * 109.49459 * 63.22005 * 28 14 13 52 52 H 1.09007 * 109.50466 * 303.16061 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9746 -2.3757 7 6 1.9934 -0.4016 -3.7283 8 7 2.6766 -1.5186 -3.8512 9 14 1.4998 0.5635 -5.2496 10 1 2.0920 1.9239 -5.1864 11 1 1.9948 -0.1365 -6.4621 12 1 0.0198 0.6702 -5.3096 13 6 2.0400 -0.7212 1.2492 14 7 1.5958 0.0023 2.4481 15 6 1.9746 1.4204 2.3779 16 6 1.4260 2.1536 3.6042 17 7 1.9578 1.5291 4.8236 18 6 1.5136 2.2526 6.0224 19 6 1.5790 0.1110 4.8937 20 1 0.4926 0.0252 4.9128 21 6 2.1629 -0.5111 6.1638 22 6 1.6713 -1.9291 6.3004 23 6 0.4578 -2.1841 6.9113 24 6 0.0045 -3.4845 7.0319 25 6 0.7699 -4.5306 6.5518 26 6 1.9859 -4.2760 5.9456 27 6 2.4367 -2.9753 5.8201 28 6 2.1277 -0.6222 3.6673 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 3.1264 -0.7994 -1.2056 33 1 1.6055 -1.7198 -1.2952 34 1 2.9245 -1.8411 -4.7317 35 1 3.1292 -0.7567 1.2291 36 1 1.6437 -1.7364 1.2699 37 1 1.5586 1.8636 1.4731 38 1 3.0610 1.5061 2.3588 39 1 0.3377 2.0911 3.6086 40 1 1.7303 3.1996 3.5689 41 1 0.4288 2.1866 6.1054 42 1 1.9733 1.8092 6.9056 43 1 1.8090 3.2990 5.9455 44 1 3.2512 -0.5081 6.1026 45 1 1.8461 0.0684 7.0310 46 1 -0.1382 -1.3672 7.2904 47 1 -0.9457 -3.6834 7.5052 48 1 0.4178 -5.5469 6.6500 49 1 2.5838 -5.0933 5.5701 50 1 3.3868 -2.7764 5.3469 51 1 3.2158 -0.5597 3.6630 52 1 1.8235 -1.6684 3.7029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602651381.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:30 Heat of formation + Delta-G solvation = 5.612571 kcal Electronic energy + Delta-G solvation = -27035.007143 eV Core-core repulsion = 23611.882559 eV Total energy + Delta-G solvation = -3423.124584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.02074 -39.80788 -37.98581 -35.63569 -34.54790 -33.88250 -31.75145 -31.24438 -29.84962 -28.71505 -27.45093 -26.64352 -24.99503 -24.27398 -23.42099 -23.23136 -21.85183 -20.62182 -20.26301 -18.52438 -17.69337 -17.18562 -16.59479 -16.55419 -16.33344 -16.10798 -15.76837 -15.62668 -15.32803 -15.08702 -14.94227 -14.39322 -14.23771 -14.06479 -13.94888 -13.70898 -13.61709 -13.34982 -13.12477 -12.94959 -12.76981 -12.72846 -12.60628 -12.52025 -12.23140 -12.13013 -12.09606 -11.95732 -11.83911 -11.67289 -11.50366 -11.35832 -11.05481 -10.84355 -10.52514 -9.77597 -9.54840 -9.37171 -9.21103 -8.17155 -6.26558 0.47620 0.53898 1.40051 1.43003 1.50599 2.42019 2.80203 2.90657 3.04121 3.16164 3.77246 3.91495 3.94871 4.03899 4.10596 4.19528 4.20608 4.23032 4.32692 4.34245 4.35906 4.48123 4.53007 4.56746 4.62159 4.67955 4.69579 4.76586 4.82068 4.83198 4.87092 4.88867 4.95118 5.00152 5.05730 5.08699 5.12818 5.21182 5.25890 5.27705 5.45064 5.47975 5.53850 5.61102 5.66979 5.75415 5.79176 5.87689 5.98316 6.01621 6.15178 6.20634 6.21711 6.31334 6.88984 7.41630 8.94925 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015108 B = 0.002935 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.890737 B = 9537.169952 C =10824.059202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.074 4.074 3 H 0.059 0.941 4 C 0.035 3.965 5 C -0.529 4.529 6 H 0.062 0.938 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.075 3.925 14 N -0.536 5.536 15 C 0.051 3.949 16 C 0.066 3.934 17 N -0.550 5.550 18 C 0.021 3.979 19 C 0.105 3.895 20 H 0.041 0.959 21 C -0.066 4.066 22 C -0.087 4.087 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.134 4.134 26 C -0.131 4.131 27 C -0.128 4.128 28 C 0.065 3.935 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.034 0.966 32 H -0.016 1.016 33 H -0.011 1.011 34 H 0.262 0.738 35 H 0.017 0.983 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.028 0.972 39 H 0.038 0.962 40 H 0.094 0.906 41 H 0.028 0.972 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.132 0.868 47 H 0.139 0.861 48 H 0.136 0.864 49 H 0.131 0.869 50 H 0.121 0.879 51 H 0.030 0.970 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.722 2.113 26.417 26.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 H 0.077 0.923 4 C -0.003 4.003 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.053 4.053 14 N -0.261 5.261 15 C -0.077 4.077 16 C -0.062 4.062 17 N -0.275 5.275 18 C -0.126 4.126 19 C -0.003 4.003 20 H 0.059 0.941 21 C -0.104 4.104 22 C -0.087 4.087 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.152 4.152 26 C -0.149 4.149 27 C -0.146 4.146 28 C -0.063 4.063 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.002 0.998 33 H 0.007 0.993 34 H 0.071 0.929 35 H 0.035 0.965 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.113 0.887 41 H 0.046 0.954 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.112 0.888 46 H 0.150 0.850 47 H 0.157 0.843 48 H 0.154 0.846 49 H 0.149 0.851 50 H 0.139 0.861 51 H 0.048 0.952 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.650 2.017 26.294 26.623 hybrid contribution 0.163 -0.123 -1.372 1.387 sum -3.486 1.894 24.922 25.236 Atomic orbital electron populations 1.21455 0.94567 1.00382 1.00353 1.21098 0.96747 0.98585 0.92875 0.92295 1.18983 0.93940 0.94656 0.92704 1.21594 1.34516 1.08600 0.91986 0.92002 1.25961 0.95227 0.96089 1.02663 1.70096 1.40242 1.22984 1.24350 0.85561 0.78964 0.78786 0.78120 1.19181 1.21048 1.19179 1.21995 0.96282 0.97498 0.89504 1.62192 1.59464 1.02635 1.01778 1.22262 0.98085 0.88558 0.98839 1.22118 0.97350 0.98376 0.88342 1.62158 1.60128 1.02036 1.03180 1.22494 0.98377 0.99355 0.92415 1.21489 0.97293 0.87713 0.93847 0.94148 1.20633 1.01225 0.91526 0.97044 1.19922 0.95261 0.95244 0.98322 1.21250 0.95780 0.97525 0.99722 1.21433 1.00428 0.92709 0.99862 1.21439 0.94908 1.00158 0.98690 1.21412 0.97056 0.97056 0.99351 1.21249 1.00337 0.92931 1.00094 1.22198 0.96848 0.98230 0.89003 0.91820 0.94111 0.94696 0.99801 0.99293 0.92936 0.96505 0.91873 0.90071 0.95347 0.94334 0.88748 0.95376 0.89827 0.90461 0.90421 0.88818 0.84984 0.84318 0.84568 0.85077 0.86055 0.95172 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 8.84 71.98 0.64 -3.69 16 2 C -0.07 -3.13 1.87 -10.80 -0.02 -3.15 16 3 H 0.06 2.47 6.12 -2.38 -0.01 2.45 16 4 C 0.03 1.87 4.45 29.85 0.13 2.00 16 5 C -0.53 -30.27 8.41 25.60 0.22 -30.05 16 6 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 7 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 8 N -0.94 -57.99 13.29 21.45 0.28 -57.70 16 9 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 C 0.07 2.77 4.53 86.30 0.39 3.16 16 14 N -0.54 -16.55 4.14 -895.77 -3.71 -20.26 16 15 C 0.05 1.45 5.15 86.31 0.44 1.89 16 16 C 0.07 1.50 5.62 86.31 0.49 1.98 16 17 N -0.55 -11.46 4.78 -896.54 -4.29 -15.75 16 18 C 0.02 0.31 9.14 127.69 1.17 1.48 16 19 C 0.11 2.29 2.02 44.93 0.09 2.38 16 20 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 21 C -0.07 -1.16 4.66 29.85 0.14 -1.02 16 22 C -0.09 -1.65 4.59 -19.87 -0.09 -1.74 16 23 C -0.12 -2.18 9.72 22.27 0.22 -1.97 16 24 C -0.13 -2.11 10.05 22.27 0.22 -1.88 16 25 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 26 C -0.13 -2.47 10.05 22.27 0.22 -2.24 16 27 C -0.13 -2.56 8.36 22.27 0.19 -2.37 16 28 C 0.07 1.75 4.50 86.31 0.39 2.14 16 29 H 0.06 2.19 7.67 -2.39 -0.02 2.17 16 30 H 0.04 1.68 6.95 -2.39 -0.02 1.66 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 32 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 33 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 34 H 0.26 15.30 8.31 -92.72 -0.77 14.53 16 35 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.08 2.46 5.94 -2.39 -0.01 2.44 16 38 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.09 1.81 8.13 -2.39 -0.02 1.79 16 41 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.08 1.03 6.13 -2.39 -0.01 1.01 16 43 H 0.08 1.01 8.13 -2.38 -0.02 0.99 16 44 H 0.08 1.40 8.06 -2.39 -0.02 1.38 16 45 H 0.09 1.31 6.04 -2.39 -0.01 1.30 16 46 H 0.13 1.85 8.06 -2.91 -0.02 1.82 16 47 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 48 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 49 H 0.13 2.08 8.06 -2.91 -0.02 2.05 16 50 H 0.12 2.32 8.06 -2.91 -0.02 2.29 16 51 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 52 H 0.07 2.04 6.60 -2.38 -0.02 2.02 16 Total: -1.00 -65.88 397.38 0.68 -65.20 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.85 Total: 16.49 kcal Atomic # 6 Polarization: -40.36 SS G_CDS: 5.52 Total: -34.85 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -7.71 Total: -93.72 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -65.88 0.68 -65.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602651381.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.818 kcal (2) G-P(sol) polarization free energy of solvation -65.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds