Wall clock time and date at job start Tue Mar 31 2020 11:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47313 * 2 1 4 4 C 1.53011 * 109.46933 * 239.99789 * 2 1 3 5 5 C 1.50706 * 109.46889 * 65.00383 * 4 2 1 6 6 H 1.07996 * 119.99825 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99962 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99734 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99942 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47000 * 60.00215 * 9 7 5 11 11 H 1.48501 * 109.46601 * 179.97438 * 9 7 5 12 12 H 1.48489 * 109.47127 * 299.99771 * 9 7 5 13 13 C 1.52998 * 109.46968 * 120.00561 * 2 1 3 14 14 N 1.46906 * 109.46509 * 294.99605 * 13 2 1 15 15 C 1.46904 * 110.99787 * 180.02562 * 14 13 2 16 16 H 1.08999 * 110.27937 * 45.63075 * 15 14 13 17 17 C 1.54595 * 110.30622 * 283.54255 * 15 14 13 18 18 C 1.54934 * 102.92221 * 219.12911 * 17 15 14 19 19 N 1.48530 * 103.22761 * 37.41371 * 18 17 15 20 20 C 1.46901 * 110.99991 * 200.28327 * 19 18 17 21 21 C 1.50704 * 109.46825 * 290.12660 * 20 19 18 22 22 C 1.38244 * 119.99568 * 269.72475 * 21 20 19 23 23 C 1.38233 * 119.99396 * 179.76565 * 22 21 20 24 24 C 1.38236 * 120.00152 * 0.48979 * 23 22 21 25 25 C 1.38232 * 120.00081 * 359.78606 * 24 23 22 26 26 C 1.38231 * 120.00040 * 359.95921 * 25 24 23 27 27 C 1.48124 * 105.82405 * 320.73797 * 19 18 17 28 28 H 1.09005 * 109.99549 * 266.07778 * 27 19 18 29 29 C 1.53001 * 109.95251 * 144.71180 * 27 19 18 30 30 H 1.09011 * 109.46738 * 60.00129 * 1 2 3 31 31 H 1.09000 * 109.47637 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47229 * 300.00385 * 1 2 3 33 33 H 1.08999 * 109.46558 * 184.99982 * 4 2 1 34 34 H 1.08996 * 109.47145 * 305.00412 * 4 2 1 35 35 H 0.97003 * 119.99908 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47031 * 175.00510 * 13 2 1 37 37 H 1.08995 * 109.47294 * 54.99624 * 13 2 1 38 38 H 1.00897 * 110.99762 * 303.95168 * 14 13 2 39 39 H 1.09001 * 110.72370 * 337.48470 * 17 15 14 40 40 H 1.09003 * 110.72480 * 100.76898 * 17 15 14 41 41 H 1.09001 * 110.66782 * 155.85410 * 18 17 15 42 42 H 1.09005 * 110.66370 * 278.97591 * 18 17 15 43 43 H 1.08998 * 109.47139 * 50.12191 * 20 19 18 44 44 H 1.08999 * 109.46882 * 170.12579 * 20 19 18 45 45 H 1.07992 * 120.00114 * 0.02562 * 22 21 20 46 46 H 1.07998 * 119.99832 * 180.24911 * 23 22 21 47 47 H 1.08004 * 119.99549 * 179.76386 * 24 23 22 48 48 H 1.08000 * 119.99825 * 179.97438 * 25 24 23 49 49 H 1.08003 * 120.00505 * 179.97438 * 26 25 24 50 50 H 1.08993 * 109.46845 * 296.46187 * 29 27 19 51 51 H 1.09004 * 109.46697 * 56.45901 * 29 27 19 52 52 H 1.09001 * 109.47220 * 176.45836 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 1.6413 0.0570 -2.4767 6 1 1.0800 0.9741 -2.3757 7 6 1.9932 -0.4017 -3.7284 8 7 2.6772 -1.5183 -3.8512 9 14 1.4985 0.5627 -5.2497 10 1 2.0897 1.9235 -5.1871 11 1 1.9946 -0.1367 -6.4621 12 1 0.0185 0.6682 -5.3093 13 6 2.0400 -0.7214 1.2492 14 7 1.6513 0.0374 2.4456 15 6 2.1256 -0.6266 3.6671 16 1 3.1632 -0.9389 3.5488 17 6 1.2330 -1.8450 3.9967 18 6 1.1185 -1.7832 5.5405 19 7 1.0388 -0.3261 5.8173 20 6 1.4029 -0.0341 7.2102 21 6 0.3257 -0.5495 8.1296 22 6 -0.7310 0.2688 8.4830 23 6 -1.7216 -0.2056 9.3224 24 6 -1.6502 -1.4946 9.8165 25 6 -0.5906 -2.3109 9.4676 26 6 0.3973 -1.8384 8.6240 27 6 1.9858 0.3162 4.8766 28 1 2.9550 0.4502 5.3570 29 6 1.4336 1.6687 4.4221 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.1263 -0.7995 -1.2056 34 1 1.6053 -1.7198 -1.2952 35 1 2.9244 -1.8413 -4.7318 36 1 3.1263 -0.7995 1.2056 37 1 1.6053 -1.7199 1.2950 38 1 1.9882 0.9872 2.3966 39 1 0.2521 -1.7412 3.5328 40 1 1.7135 -2.7715 3.6823 41 1 0.2147 -2.2893 5.8799 42 1 2.0022 -2.2161 6.0094 43 1 2.3480 -0.5220 7.4486 44 1 1.5071 1.0431 7.3404 45 1 -0.7848 1.2771 8.1000 46 1 -2.5493 0.4323 9.5953 47 1 -2.4223 -1.8639 10.4753 48 1 -0.5347 -3.3179 9.8540 49 1 1.2254 -2.4759 8.3517 50 1 0.5077 1.5154 3.8679 51 1 1.2361 2.2921 5.2942 52 1 2.1637 2.1622 3.7805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602665182.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:19 Heat of formation + Delta-G solvation = 19.409908 kcal Electronic energy + Delta-G solvation = -26262.204409 eV Core-core repulsion = 22839.678123 eV Total energy + Delta-G solvation = -3422.526287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.08801 -38.97427 -36.45274 -34.27445 -32.57611 -31.70952 -31.30424 -31.07325 -29.13206 -26.79265 -25.76358 -25.08073 -24.61142 -22.86792 -22.45152 -21.65557 -20.76897 -19.46868 -18.92513 -17.10916 -16.42625 -16.11976 -15.73967 -15.59076 -15.43869 -14.97576 -14.51819 -14.38778 -14.14048 -13.77307 -13.61513 -13.40377 -13.13446 -12.80257 -12.57001 -12.48471 -12.07857 -11.98934 -11.87495 -11.59219 -11.44752 -11.37551 -11.29356 -11.11427 -11.02805 -10.91080 -10.81976 -10.68841 -10.62845 -10.25475 -10.16730 -9.65981 -9.14704 -9.10747 -9.04227 -8.92210 -8.55946 -8.30318 -8.05100 -5.95261 -3.96233 1.09519 1.17935 3.36056 3.40219 3.42895 3.44544 3.95162 4.34718 4.44698 4.50951 4.56881 4.60576 4.76190 4.77415 4.89642 4.99823 5.09386 5.20667 5.23845 5.28365 5.37599 5.40399 5.40731 5.54649 5.57563 5.69482 5.75400 5.76258 5.79456 5.80996 5.89332 5.93879 6.04700 6.20085 6.21081 6.26317 6.27934 6.38693 6.41372 6.48574 6.60039 6.73802 6.75369 6.79765 6.90280 7.06869 7.23173 7.24771 7.44429 7.69224 7.73499 7.88825 8.05186 8.49359 9.10006 9.66876 11.16222 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.030402 B = 0.002063 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.784240 B =13569.006346 C =13648.568532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.052 0.948 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.063 3.937 14 N -0.674 5.674 15 C 0.080 3.920 16 H 0.041 0.959 17 C -0.113 4.113 18 C 0.038 3.962 19 N -0.499 5.499 20 C 0.084 3.916 21 C -0.072 4.072 22 C -0.098 4.098 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.114 4.114 27 C 0.067 3.933 28 H 0.047 0.953 29 C -0.133 4.133 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.011 0.989 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.021 0.979 37 H 0.066 0.934 38 H 0.340 0.660 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.042 0.958 44 H 0.082 0.918 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.117 0.883 50 H 0.083 0.917 51 H 0.048 0.952 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.730 1.206 28.592 28.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 H 0.070 0.930 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.066 4.066 14 N -0.308 5.308 15 C -0.031 4.031 16 H 0.059 0.941 17 C -0.152 4.152 18 C -0.090 4.090 19 N -0.223 5.223 20 C -0.044 4.044 21 C -0.073 4.073 22 C -0.117 4.117 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.132 4.132 27 C -0.042 4.042 28 H 0.065 0.935 29 C -0.191 4.191 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.030 0.970 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.084 0.916 38 H 0.160 0.840 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.100 0.900 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.137 0.863 49 H 0.135 0.865 50 H 0.101 0.899 51 H 0.067 0.933 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.782 1.025 28.404 28.822 hybrid contribution 1.640 0.215 -0.798 1.836 sum -3.142 1.240 27.606 27.812 Atomic orbital electron populations 1.21576 0.95673 1.00527 1.00121 1.21184 0.96021 0.98796 0.94017 0.92967 1.19115 0.95820 0.95566 0.90482 1.21206 1.34537 1.08279 0.91003 0.92622 1.25028 0.95380 0.95124 0.99100 1.69959 1.39078 1.21262 1.23430 0.86684 0.78911 0.80073 0.82484 1.20343 1.21415 1.20260 1.22173 0.96888 0.97917 0.89605 1.60840 1.63535 1.05648 1.00735 1.22293 0.96225 0.94197 0.90370 0.94134 1.22561 1.01660 0.96803 0.94148 1.23225 1.00499 0.88939 0.96328 1.64818 1.47992 1.07953 1.01571 1.21217 0.94230 1.00982 0.87980 1.19713 0.96403 0.94116 0.97028 1.21032 0.93605 0.99920 0.97124 1.21157 0.98816 0.96017 0.97969 1.21142 0.98315 0.94385 1.00319 1.21103 0.94720 0.99697 0.98472 1.21049 0.99130 0.95257 0.97791 1.22482 0.93514 0.95718 0.92437 0.93452 1.21659 1.02649 0.94165 1.00644 0.92904 0.94244 0.93843 0.97041 0.96609 0.93085 0.96050 0.91596 0.83969 0.89269 0.91527 0.90026 0.94223 0.93998 0.89983 0.86004 0.86166 0.86323 0.86262 0.86510 0.89857 0.93301 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.08 -1.66 2.48 -90.61 -0.22 -1.88 16 3 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.03 0.71 4.45 -27.87 -0.12 0.59 16 5 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 6 H 0.06 1.53 7.05 -52.49 -0.37 1.16 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.06 1.08 4.91 -3.82 -0.02 1.06 16 14 N -0.67 -9.56 4.68 -105.29 -0.49 -10.05 16 15 C 0.08 0.99 3.27 -66.36 -0.22 0.77 16 16 H 0.04 0.52 8.02 -51.93 -0.42 0.10 16 17 C -0.11 -1.36 6.18 -24.87 -0.15 -1.51 16 18 C 0.04 0.40 5.55 -1.90 -0.01 0.38 16 19 N -0.50 -5.27 4.90 -223.82 -1.10 -6.36 16 20 C 0.08 0.75 4.85 -4.97 -0.02 0.73 16 21 C -0.07 -0.67 5.10 -104.62 -0.53 -1.20 16 22 C -0.10 -0.88 9.70 -39.58 -0.38 -1.27 16 23 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 24 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 25 C -0.12 -0.98 10.05 -39.59 -0.40 -1.38 16 26 C -0.11 -0.98 8.73 -39.59 -0.35 -1.33 16 27 C 0.07 0.72 3.07 -66.52 -0.20 0.51 16 28 H 0.05 0.48 7.78 -51.93 -0.40 0.07 16 29 C -0.13 -1.40 8.27 37.16 0.31 -1.09 16 30 H 0.05 1.11 6.95 -51.92 -0.36 0.75 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.02 0.38 8.11 -51.93 -0.42 -0.04 16 37 H 0.07 1.17 7.72 -51.93 -0.40 0.77 16 38 H 0.34 4.60 6.30 -39.29 -0.25 4.35 16 39 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.87 7.80 -51.93 -0.41 0.46 16 42 H 0.04 0.38 7.85 -51.93 -0.41 -0.03 16 43 H 0.04 0.36 7.84 -51.93 -0.41 -0.05 16 44 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16 45 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 46 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 48 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 49 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 50 H 0.08 1.03 7.47 -51.93 -0.39 0.64 16 51 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 52 H 0.05 0.54 7.09 -51.93 -0.37 0.17 16 LS Contribution 404.49 15.07 6.10 6.10 Total: -1.00 -30.07 404.49 -12.58 -42.65 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -9.62 Total: 0.94 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -3.18 Total: -23.68 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: -0.85 Total: -42.86 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.07 -12.58 -42.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602665182.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.061 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds