Wall clock time and date at job start Tue Mar 31 2020 11:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47313 * 2 1 4 4 C 1.53011 * 109.46933 * 239.99789 * 2 1 3 5 5 C 1.50706 * 109.46889 * 65.00383 * 4 2 1 6 6 H 1.07996 * 119.99825 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99962 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99734 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99942 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47000 * 60.00215 * 9 7 5 11 11 H 1.48501 * 109.46601 * 179.97438 * 9 7 5 12 12 H 1.48489 * 109.47127 * 299.99771 * 9 7 5 13 13 C 1.52998 * 109.46968 * 120.00561 * 2 1 3 14 14 N 1.46906 * 109.46509 * 294.99605 * 13 2 1 15 15 C 1.46904 * 110.99787 * 180.02562 * 14 13 2 16 16 H 1.08999 * 110.27937 * 45.63075 * 15 14 13 17 17 C 1.54595 * 110.30622 * 283.54255 * 15 14 13 18 18 C 1.54934 * 102.92221 * 219.12911 * 17 15 14 19 19 N 1.48530 * 103.22761 * 37.41371 * 18 17 15 20 20 C 1.46901 * 110.99991 * 200.28327 * 19 18 17 21 21 C 1.50704 * 109.46825 * 290.12660 * 20 19 18 22 22 C 1.38244 * 119.99568 * 269.72475 * 21 20 19 23 23 C 1.38233 * 119.99396 * 179.76565 * 22 21 20 24 24 C 1.38236 * 120.00152 * 0.48979 * 23 22 21 25 25 C 1.38232 * 120.00081 * 359.78606 * 24 23 22 26 26 C 1.38231 * 120.00040 * 359.95921 * 25 24 23 27 27 C 1.48124 * 105.82405 * 320.73797 * 19 18 17 28 28 H 1.09005 * 109.99549 * 266.07778 * 27 19 18 29 29 C 1.53001 * 109.95251 * 144.71180 * 27 19 18 30 30 H 1.09011 * 109.46738 * 60.00129 * 1 2 3 31 31 H 1.09000 * 109.47637 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47229 * 300.00385 * 1 2 3 33 33 H 1.08999 * 109.46558 * 184.99982 * 4 2 1 34 34 H 1.08996 * 109.47145 * 305.00412 * 4 2 1 35 35 H 0.97003 * 119.99908 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47031 * 175.00510 * 13 2 1 37 37 H 1.08995 * 109.47294 * 54.99624 * 13 2 1 38 38 H 1.00897 * 110.99762 * 303.95168 * 14 13 2 39 39 H 1.09001 * 110.72370 * 337.48470 * 17 15 14 40 40 H 1.09003 * 110.72480 * 100.76898 * 17 15 14 41 41 H 1.09001 * 110.66782 * 155.85410 * 18 17 15 42 42 H 1.09005 * 110.66370 * 278.97591 * 18 17 15 43 43 H 1.08998 * 109.47139 * 50.12191 * 20 19 18 44 44 H 1.08999 * 109.46882 * 170.12579 * 20 19 18 45 45 H 1.07992 * 120.00114 * 0.02562 * 22 21 20 46 46 H 1.07998 * 119.99832 * 180.24911 * 23 22 21 47 47 H 1.08004 * 119.99549 * 179.76386 * 24 23 22 48 48 H 1.08000 * 119.99825 * 179.97438 * 25 24 23 49 49 H 1.08003 * 120.00505 * 179.97438 * 26 25 24 50 50 H 1.08993 * 109.46845 * 296.46187 * 29 27 19 51 51 H 1.09004 * 109.46697 * 56.45901 * 29 27 19 52 52 H 1.09001 * 109.47220 * 176.45836 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 1.6413 0.0570 -2.4767 6 1 1.0800 0.9741 -2.3757 7 6 1.9932 -0.4017 -3.7284 8 7 2.6772 -1.5183 -3.8512 9 14 1.4985 0.5627 -5.2497 10 1 2.0897 1.9235 -5.1871 11 1 1.9946 -0.1367 -6.4621 12 1 0.0185 0.6682 -5.3093 13 6 2.0400 -0.7214 1.2492 14 7 1.6513 0.0374 2.4456 15 6 2.1256 -0.6266 3.6671 16 1 3.1632 -0.9389 3.5488 17 6 1.2330 -1.8450 3.9967 18 6 1.1185 -1.7832 5.5405 19 7 1.0388 -0.3261 5.8173 20 6 1.4029 -0.0341 7.2102 21 6 0.3257 -0.5495 8.1296 22 6 -0.7310 0.2688 8.4830 23 6 -1.7216 -0.2056 9.3224 24 6 -1.6502 -1.4946 9.8165 25 6 -0.5906 -2.3109 9.4676 26 6 0.3973 -1.8384 8.6240 27 6 1.9858 0.3162 4.8766 28 1 2.9550 0.4502 5.3570 29 6 1.4336 1.6687 4.4221 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.1263 -0.7995 -1.2056 34 1 1.6053 -1.7198 -1.2952 35 1 2.9244 -1.8413 -4.7318 36 1 3.1263 -0.7995 1.2056 37 1 1.6053 -1.7199 1.2950 38 1 1.9882 0.9872 2.3966 39 1 0.2521 -1.7412 3.5328 40 1 1.7135 -2.7715 3.6823 41 1 0.2147 -2.2893 5.8799 42 1 2.0022 -2.2161 6.0094 43 1 2.3480 -0.5220 7.4486 44 1 1.5071 1.0431 7.3404 45 1 -0.7848 1.2771 8.1000 46 1 -2.5493 0.4323 9.5953 47 1 -2.4223 -1.8639 10.4753 48 1 -0.5347 -3.3179 9.8540 49 1 1.2254 -2.4759 8.3517 50 1 0.5077 1.5154 3.8679 51 1 1.2361 2.2921 5.2942 52 1 2.1637 2.1622 3.7805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602665182.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:18 Heat of formation + Delta-G solvation = 3.778166 kcal Electronic energy + Delta-G solvation = -26262.882253 eV Core-core repulsion = 22839.678123 eV Total energy + Delta-G solvation = -3423.204130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.88443 -39.72681 -37.88365 -35.65854 -34.22582 -32.81651 -32.27529 -31.69250 -30.15130 -28.70319 -26.93074 -26.00004 -25.84202 -24.28939 -23.42690 -22.43719 -21.56390 -20.80888 -20.22502 -18.48940 -17.75225 -17.05412 -16.79203 -16.49765 -16.43394 -16.16210 -15.84623 -15.67173 -15.19674 -14.79907 -14.65464 -14.35451 -14.20500 -14.03375 -13.68725 -13.43001 -13.39616 -13.25863 -13.04249 -12.93341 -12.72610 -12.63410 -12.54889 -12.30514 -12.25134 -12.18034 -11.91346 -11.84857 -11.75799 -11.71000 -11.55984 -11.44247 -11.06703 -10.86239 -10.52166 -9.76179 -9.68681 -9.35907 -9.21388 -8.16564 -6.25610 0.47586 0.56740 1.40486 1.43429 1.51000 2.42694 2.77602 3.16589 3.20682 3.24634 3.57834 3.76894 3.95965 3.99207 4.16646 4.20254 4.22073 4.28540 4.32440 4.35706 4.40863 4.44520 4.54359 4.62534 4.65462 4.66455 4.72954 4.81606 4.85937 4.91509 4.93540 4.97986 5.02419 5.06121 5.14973 5.17210 5.21163 5.27958 5.31331 5.48662 5.52621 5.54628 5.58153 5.61946 5.68058 5.74394 5.82911 5.90116 5.97184 6.08409 6.16150 6.20457 6.33396 6.55975 6.90274 7.42413 8.95234 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.030402 B = 0.002063 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.784240 B =13569.006346 C =13648.568532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.072 4.072 3 H 0.054 0.946 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.078 3.922 14 N -0.669 5.669 15 C 0.078 3.922 16 H 0.040 0.960 17 C -0.113 4.113 18 C 0.047 3.953 19 N -0.509 5.509 20 C 0.087 3.913 21 C -0.085 4.085 22 C -0.113 4.113 23 C -0.131 4.131 24 C -0.130 4.130 25 C -0.130 4.130 26 C -0.123 4.123 27 C 0.072 3.928 28 H 0.060 0.940 29 C -0.129 4.129 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.066 0.934 33 H -0.015 1.015 34 H -0.012 1.012 35 H 0.261 0.739 36 H 0.015 0.985 37 H 0.058 0.942 38 H 0.346 0.654 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.048 0.952 44 H 0.088 0.912 45 H 0.126 0.874 46 H 0.136 0.864 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.124 0.876 50 H 0.064 0.936 51 H 0.059 0.941 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 2.268 29.921 30.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 H 0.072 0.928 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.202 4.202 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.193 1.193 13 C -0.051 4.051 14 N -0.303 5.303 15 C -0.033 4.033 16 H 0.058 0.942 17 C -0.152 4.152 18 C -0.081 4.081 19 N -0.233 5.233 20 C -0.040 4.040 21 C -0.085 4.085 22 C -0.131 4.131 23 C -0.149 4.149 24 C -0.149 4.149 25 C -0.148 4.148 26 C -0.142 4.142 27 C -0.037 4.037 28 H 0.078 0.922 29 C -0.187 4.187 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.003 0.997 34 H 0.006 0.994 35 H 0.070 0.930 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.167 0.833 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.106 0.894 45 H 0.144 0.856 46 H 0.154 0.846 47 H 0.155 0.845 48 H 0.154 0.846 49 H 0.142 0.858 50 H 0.083 0.917 51 H 0.078 0.922 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.349 2.102 29.756 30.306 hybrid contribution 1.803 -0.150 -1.144 2.141 sum -3.546 1.952 28.611 28.896 Atomic orbital electron populations 1.21462 0.94744 1.00182 1.00423 1.20992 0.96617 0.98371 0.93112 0.92765 1.19008 0.93999 0.94630 0.92821 1.21616 1.34353 1.08598 0.92062 0.92062 1.25974 0.95322 0.96149 1.02706 1.70100 1.40284 1.22973 1.24286 0.85551 0.78911 0.78779 0.78121 1.19189 1.21084 1.19276 1.21837 0.96170 0.97446 0.89634 1.60775 1.63571 1.05748 1.00241 1.22360 0.96105 0.94709 0.90084 0.94188 1.22516 1.00447 0.96790 0.95418 1.23128 1.00897 0.89159 0.94922 1.64811 1.48212 1.07850 1.02455 1.21216 0.94464 1.01427 0.86929 1.19808 0.96692 0.94538 0.97475 1.21207 0.93986 1.00285 0.97646 1.21424 0.99129 0.96551 0.97748 1.21449 0.98739 0.94301 1.00366 1.21389 0.94562 1.00600 0.98243 1.21224 0.99666 0.95279 0.98031 1.22436 0.94227 0.95277 0.91714 0.92235 1.21601 1.01821 0.94281 1.00970 0.94478 0.94910 0.91470 0.99665 0.99366 0.92989 0.96724 0.92323 0.83289 0.91222 0.91405 0.90333 0.93010 0.93362 0.89402 0.85645 0.84640 0.84460 0.84601 0.85767 0.91730 0.92220 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.30 8.89 71.98 0.64 -3.66 16 2 C -0.07 -2.96 2.48 -10.79 -0.03 -2.98 16 3 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 4 C 0.03 1.76 4.45 29.85 0.13 1.89 16 5 C -0.53 -30.14 8.41 25.60 0.22 -29.93 16 6 H 0.06 3.35 7.05 -2.91 -0.02 3.33 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 8 N -0.94 -57.77 13.29 21.45 0.28 -57.48 16 9 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 C 0.08 2.70 4.91 86.30 0.42 3.12 16 14 N -0.67 -18.39 4.68 -487.03 -2.28 -20.67 16 15 C 0.08 1.84 3.27 45.79 0.15 1.99 16 16 H 0.04 0.97 8.02 -2.39 -0.02 0.95 16 17 C -0.11 -2.64 6.18 31.80 0.20 -2.44 16 18 C 0.05 0.91 5.55 86.65 0.48 1.39 16 19 N -0.51 -9.94 4.90 -862.04 -4.22 -14.16 16 20 C 0.09 1.42 4.85 85.56 0.42 1.83 16 21 C -0.08 -1.45 5.10 -19.86 -0.10 -1.55 16 22 C -0.11 -1.90 9.70 22.27 0.22 -1.68 16 23 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 24 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 25 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 26 C -0.12 -1.96 8.73 22.27 0.19 -1.77 16 27 C 0.07 1.41 3.07 45.01 0.14 1.55 16 28 H 0.06 1.05 7.78 -2.38 -0.02 1.04 16 29 C -0.13 -2.47 8.27 71.98 0.60 -1.87 16 30 H 0.04 1.53 6.95 -2.38 -0.02 1.51 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 2.28 7.75 -2.39 -0.02 2.26 16 33 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 34 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 35 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.01 0.52 8.11 -2.39 -0.02 0.50 16 37 H 0.06 2.11 7.72 -2.39 -0.02 2.09 16 38 H 0.35 8.88 6.30 -89.70 -0.57 8.31 16 39 H 0.07 1.91 8.06 -2.39 -0.02 1.89 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.08 1.59 7.80 -2.39 -0.02 1.58 16 42 H 0.05 0.89 7.85 -2.38 -0.02 0.87 16 43 H 0.05 0.72 7.84 -2.39 -0.02 0.70 16 44 H 0.09 1.31 8.05 -2.39 -0.02 1.29 16 45 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 46 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 47 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 48 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 49 H 0.12 1.69 8.06 -2.91 -0.02 1.67 16 50 H 0.06 1.50 7.47 -2.39 -0.02 1.48 16 51 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 52 H 0.06 1.09 7.09 -2.39 -0.02 1.07 16 Total: -1.00 -64.73 404.49 0.91 -63.82 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.29 Total: 20.51 kcal Atomic # 6 Polarization: -43.73 SS G_CDS: 4.80 Total: -38.93 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -6.21 Total: -92.31 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -64.73 0.91 -63.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602665182.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.598 kcal (2) G-P(sol) polarization free energy of solvation -64.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds