Wall clock time and date at job start Tue Mar 31 2020 11:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.50705 * 109.47390 * 64.99953 * 4 2 1 6 6 H 1.08000 * 119.99498 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00441 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46926 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46855 * 119.99990 * 9 7 5 12 12 H 1.48496 * 109.46967 * 239.99783 * 9 7 5 13 13 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 14 14 N 1.46900 * 109.46619 * 294.99903 * 13 2 1 15 15 C 1.46907 * 110.99641 * 179.97438 * 14 13 2 16 16 H 1.08996 * 110.27586 * 327.08908 * 15 14 13 17 17 C 1.54596 * 110.30598 * 89.28292 * 15 14 13 18 18 C 1.54943 * 102.92084 * 96.95928 * 17 15 14 19 19 N 1.48531 * 103.22721 * 37.41128 * 18 17 15 20 20 C 1.46899 * 111.00189 * 200.27731 * 19 18 17 21 21 C 1.50700 * 109.46850 * 307.40023 * 20 19 18 22 22 C 1.38235 * 119.99968 * 269.71861 * 21 20 19 23 23 C 1.38233 * 119.99932 * 179.76803 * 22 21 20 24 24 C 1.38232 * 120.00462 * 0.48883 * 23 22 21 25 25 C 1.38238 * 119.99738 * 359.78775 * 24 23 22 26 26 C 1.38240 * 120.00061 * 359.95813 * 25 24 23 27 27 C 1.47901 * 105.82087 * 320.79298 * 19 18 17 28 28 H 1.09000 * 109.91754 * 265.98130 * 27 19 18 29 29 C 1.53006 * 109.91709 * 144.68533 * 27 19 18 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47630 * 185.00216 * 4 2 1 34 34 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 35 35 H 0.97002 * 119.99729 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47059 * 54.99596 * 13 2 1 37 37 H 1.08996 * 109.47073 * 174.99688 * 13 2 1 38 38 H 1.00900 * 111.00289 * 56.04740 * 14 13 2 39 39 H 1.09004 * 110.71864 * 215.31439 * 17 15 14 40 40 H 1.08994 * 110.72946 * 338.59685 * 17 15 14 41 41 H 1.08989 * 110.66473 * 278.97244 * 18 17 15 42 42 H 1.09000 * 110.80675 * 155.91120 * 18 17 15 43 43 H 1.09002 * 109.46837 * 67.39450 * 20 19 18 44 44 H 1.08997 * 109.47672 * 187.39607 * 20 19 18 45 45 H 1.08004 * 119.99772 * 0.02562 * 22 21 20 46 46 H 1.08010 * 119.99619 * 180.25271 * 23 22 21 47 47 H 1.07997 * 120.00443 * 179.77099 * 24 23 22 48 48 H 1.07992 * 120.00423 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.00585 * 179.97438 * 26 25 24 50 50 H 1.09003 * 109.46730 * 302.40767 * 29 27 19 51 51 H 1.08999 * 109.47026 * 62.41107 * 29 27 19 52 52 H 1.08997 * 109.47064 * 182.40955 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9923 -0.4023 -3.7283 8 7 2.6754 -1.5194 -3.8512 9 14 1.4987 0.5628 -5.2497 10 1 0.7433 1.7750 -4.8433 11 1 2.7170 0.9665 -5.9966 12 1 0.6440 -0.2857 -6.1184 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6272 3.6672 16 1 2.1211 -1.7090 3.5343 17 6 3.5441 -0.1339 4.0307 18 6 3.2688 0.9660 5.0867 19 7 2.1253 0.4167 5.8593 20 6 1.4146 1.4829 6.5777 21 6 2.3981 2.2789 7.3963 22 6 2.6721 1.9085 8.6997 23 6 3.5778 2.6358 9.4490 24 6 4.2020 3.7395 8.8985 25 6 3.9238 4.1133 7.5971 26 6 3.0220 3.3830 6.8459 27 6 1.2426 -0.2329 4.8662 28 1 0.4690 0.4645 4.5447 29 6 0.6028 -1.4820 5.4757 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1263 -0.7996 -1.2056 34 1 1.6053 -1.7198 -1.2952 35 1 2.9227 -1.8423 -4.7318 36 1 1.6054 -1.7198 1.2951 37 1 3.1263 -0.7995 1.2055 38 1 0.6529 0.1793 2.4753 39 1 4.1350 -0.9425 4.4610 40 1 4.0421 0.2863 3.1570 41 1 2.9919 1.9027 4.6032 42 1 4.1357 1.1090 5.7318 43 1 0.9238 2.1400 5.8597 44 1 0.6669 1.0414 7.2364 45 1 2.1816 1.0484 9.1310 46 1 3.7949 2.3439 10.4660 47 1 4.9069 4.3099 9.4852 48 1 4.4111 4.9758 7.1670 49 1 2.8042 3.6752 5.8292 50 1 1.3845 -2.1627 5.8131 51 1 -0.0196 -1.1948 6.3232 52 1 -0.0121 -1.9784 4.7250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602665183.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:22 Heat of formation + Delta-G solvation = 12.672191 kcal Electronic energy + Delta-G solvation = -26302.157292 eV Core-core repulsion = 22879.338836 eV Total energy + Delta-G solvation = -3422.818456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.14489 -38.90698 -36.52338 -34.20611 -32.64610 -31.52256 -31.41072 -31.03757 -29.34804 -26.89817 -25.93177 -25.27056 -24.32475 -22.87486 -22.38994 -21.62703 -20.45802 -20.08972 -18.86861 -16.99934 -16.47003 -16.25562 -15.86412 -15.51376 -15.35152 -14.85998 -14.55785 -14.23613 -13.96187 -13.77480 -13.57478 -13.41085 -13.03817 -12.89282 -12.85750 -12.60636 -12.28188 -12.11341 -11.93068 -11.76255 -11.56241 -11.43321 -11.19493 -11.11185 -11.02339 -10.97363 -10.88842 -10.73769 -10.63939 -10.32170 -10.16855 -9.72096 -9.17349 -9.13192 -9.04632 -8.93571 -8.51865 -8.33226 -8.14590 -5.97602 -3.98679 1.09440 1.18489 3.31877 3.39509 3.43453 3.46312 3.95313 4.34102 4.41027 4.48936 4.60506 4.64082 4.77905 4.82315 4.91520 5.03302 5.12905 5.20898 5.26810 5.31843 5.37935 5.38266 5.43832 5.49801 5.61990 5.68488 5.72328 5.77221 5.80856 5.83059 5.86177 5.97998 6.03968 6.08172 6.13409 6.17172 6.22711 6.27097 6.28470 6.39625 6.46944 6.55872 6.72217 6.77567 6.90159 6.96470 7.10199 7.17186 7.39662 7.63956 7.70484 7.86190 8.02797 8.46574 9.07912 9.64757 11.13921 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021661 B = 0.002235 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.357728 B =12526.894078 C =13154.498798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.064 0.936 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.066 3.934 14 N -0.684 5.684 15 C 0.078 3.922 16 H 0.054 0.946 17 C -0.114 4.114 18 C 0.045 3.955 19 N -0.505 5.505 20 C 0.085 3.915 21 C -0.078 4.078 22 C -0.100 4.100 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.121 4.121 26 C -0.111 4.111 27 C 0.061 3.939 28 H 0.059 0.941 29 C -0.135 4.135 30 H 0.030 0.970 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.015 0.985 34 H 0.014 0.986 35 H 0.259 0.741 36 H 0.024 0.976 37 H 0.067 0.933 38 H 0.337 0.663 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.046 0.954 44 H 0.081 0.919 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.063 0.937 51 H 0.053 0.947 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.639 6.098 27.034 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.063 4.063 14 N -0.316 5.316 15 C -0.032 4.032 16 H 0.072 0.928 17 C -0.152 4.152 18 C -0.083 4.083 19 N -0.229 5.229 20 C -0.043 4.043 21 C -0.079 4.079 22 C -0.119 4.119 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.139 4.139 26 C -0.130 4.130 27 C -0.048 4.048 28 H 0.077 0.923 29 C -0.193 4.193 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.032 0.968 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.156 0.844 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.082 0.918 51 H 0.072 0.928 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.122 6.028 27.258 27.917 hybrid contribution -1.076 0.308 -1.480 1.856 sum -0.954 6.336 25.779 26.563 Atomic orbital electron populations 1.21736 0.96750 1.00409 1.00188 1.21214 0.94794 1.00036 0.94198 0.91742 1.19113 0.96132 0.95361 0.90377 1.21270 1.34533 1.08210 0.90976 0.92552 1.25028 0.95373 0.95111 0.99122 1.69978 1.39143 1.21257 1.23252 0.86576 0.78254 0.80114 0.83302 1.19776 1.21082 1.21126 1.22170 1.00373 0.94341 0.89413 1.60741 1.19251 1.50435 1.01211 1.22415 0.94831 0.96795 0.89180 0.92790 1.22535 0.96148 0.98051 0.98509 1.23162 0.93893 0.96896 0.94321 1.64883 1.07828 1.25652 1.24568 1.21233 0.94432 0.92050 0.96587 1.19758 0.98081 0.95493 0.94528 1.21022 0.97908 0.99187 0.93769 1.21143 0.97256 0.95850 0.99886 1.21149 0.99972 0.97357 0.95616 1.21136 0.98309 0.99914 0.94538 1.21145 0.96860 0.95238 0.99726 1.22622 0.94536 0.96463 0.91178 0.92341 1.21752 1.00293 0.96819 1.00413 0.95090 0.91884 0.94021 0.96673 0.96770 0.93162 0.95793 0.91488 0.84365 0.91273 0.90023 0.93220 0.90589 0.93628 0.90048 0.86043 0.86225 0.86309 0.86129 0.86176 0.91813 0.92755 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.77 37.16 0.33 -2.14 16 2 C -0.08 -1.69 2.55 -90.62 -0.23 -1.92 16 3 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.32 8.41 -34.44 -0.29 -14.61 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 13 C 0.07 1.12 5.00 -3.82 -0.02 1.10 16 14 N -0.68 -9.78 6.28 -105.29 -0.66 -10.44 16 15 C 0.08 0.98 2.97 -66.35 -0.20 0.78 16 16 H 0.05 0.71 7.36 -51.93 -0.38 0.32 16 17 C -0.11 -1.39 6.76 -24.87 -0.17 -1.56 16 18 C 0.04 0.50 4.97 -1.90 -0.01 0.49 16 19 N -0.50 -5.35 5.02 -224.00 -1.12 -6.47 16 20 C 0.08 0.80 5.19 -4.98 -0.03 0.78 16 21 C -0.08 -0.74 4.59 -104.62 -0.48 -1.22 16 22 C -0.10 -0.89 9.70 -39.58 -0.38 -1.27 16 23 C -0.12 -1.00 10.05 -39.59 -0.40 -1.39 16 24 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 25 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 26 C -0.11 -1.04 8.34 -39.58 -0.33 -1.37 16 27 C 0.06 0.65 2.77 -66.64 -0.18 0.47 16 28 H 0.06 0.65 6.92 -51.93 -0.36 0.29 16 29 C -0.13 -1.29 9.32 37.16 0.35 -0.94 16 30 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 31 H 0.06 1.27 6.95 -51.93 -0.36 0.90 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.02 0.41 8.07 -51.93 -0.42 -0.01 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.34 4.61 6.29 -39.29 -0.25 4.36 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.10 8.05 -51.93 -0.42 0.68 16 41 H 0.05 0.59 7.09 -51.94 -0.37 0.22 16 42 H 0.08 0.86 7.72 -51.93 -0.40 0.46 16 43 H 0.05 0.44 7.76 -51.93 -0.40 0.04 16 44 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 45 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 46 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 47 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 48 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 49 H 0.12 1.08 7.39 -52.49 -0.39 0.69 16 50 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 404.05 15.07 6.09 6.09 Total: -1.00 -29.68 404.05 -12.56 -42.24 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -9.51 Total: 1.71 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -3.06 Total: -23.56 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -1.05 Total: -43.20 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -29.68 -12.56 -42.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602665183.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.909 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds